Caracterização funcional da proteína AtWWP1, componente de uma interconexão de fatores da interação geminivirus-hospedeiro envolvido na formação de corpos subnucleares
Autor(a) principal: | |
---|---|
Data de Publicação: | 2013 |
Tipo de documento: | Dissertação |
Idioma: | por |
Título da fonte: | LOCUS Repositório Institucional da UFV |
Texto Completo: | http://locus.ufv.br/handle/123456789/4788 |
Resumo: | Plants are engaged in a continuous co-evolutionary struggle for dominance with their pathogens and the outcomes of these interactions are of particular importance to human activities, as they can have dramatic effects on agricultural systems (Dodds & Rathjen, 2010). Recently, the convergence of molecular studies of plant immunity and pathogen infection strategies is revealing an integrated picture of the plant pathogen interaction (Mukhtar et al., 2011) in which the pathogen effectors interaction converge onto highly connected subgroups of proteins, named hubs. A well-defined hub form plant immune system network corresponds to CSN5A protein, a catalytic subunit of the COP9 signalosome acting as a key regulator in several basic cellular processes. Consistent with the prediction that different effectors from different pathogens target similar connections in plant-pathogen interaction network, it has been shown, independently, that the protein C2 from geminivirus, a DNA virus that infects a wide variety of agronomic crops, interacts to CNS5A (Lozano- Duran et al, 2011). Additionally, it was shown that NIG and the immune receptor NIK, both targets of geminivírus NSP, interact to CSN5A (Machado, 2011; Mukhtar et al., 2011). Based on this information, it is expected that the hub CNS5A is a functional element in the geminivirus-host interaction network. Recently, it was reported that NIG, a cellular partner of CSN5A, also interacts with a unknown function protein, encoded by the locus AT2G41020 in yeast (Machado, 2011). As a possible component from geminivirus-host interaction network converging to CSN5A, AT2G41020 may interact directly or indirectly with virulence factors in defense response or compatibility. The objectives of this research involved biochemical characterization of the protein encoded by the locus AT2G4102, designated AtWWP1, and identification of its possible interactions with viral proteins and host factors. In silico analysis of tWWP1 predicted structure revealed the presence of two WW domains, and a C-terminal domain highly conserved between homologous in plant and animals. Furthermore, it has been shown that AtWWP1 is a nuclear protein capable of forming nuclear bodies via the conserved C-terminal domain. Coimmunoprecipitation and BiFC assays demonstrated that AtWWP1 interacts in vivo with the cytoplasmic protein NIG, redirecting it to nuclear bodies. In order to explore the formative activity of nuclear bodies AtWWP1, the interaction between AtWWP1 and a second protein partner AtMBD2 (methyl CG binding domaincontaining protein) was characterized in vivo. The ability to form nuclear bodies as interaction with AtMBD2 were mapped AtWWP1 occuring via its domain and C-terminal conserved, substantiating the argument that this region of AtWWP1 is responsible for the formation of nuclear bodies. Colocalization assays have shown that nuclear bodies contained in AtWWP1 are distinct from those formed by proteins involved in RNA splicing, but colocalized with nuclear bodies containing CDKC2. Furthermore, it was demonstrated that AtWWP1 does not bind to RNA, but exhibits a binding activity to DNA. These characteristics imply that AtWWP1 should be involved with basic nuclear functions. As a component of a functional hub in geminivirus-host interaction network, it is important to assess whether the viral infection would affect the nuclear bodies formed by AtWWP1. |
id |
UFV_3618fe1ff109ef2d94962857e23cc37e |
---|---|
oai_identifier_str |
oai:locus.ufv.br:123456789/4788 |
network_acronym_str |
UFV |
network_name_str |
LOCUS Repositório Institucional da UFV |
repository_id_str |
2145 |
spelling |
Calil, Iara Pinheirohttp://lattes.cnpq.br/9424472381660293Bressan, Gustavo Costahttp://lattes.cnpq.br/1153853218347720Ramos, Humberto Josué de Oliveirahttp://lattes.cnpq.br/4037452920080174Fontes, Elizabeth Pacheco Batistahttp://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4781848H2Santos, Anésia Aparecida doshttp://lattes.cnpq.br/85273945930888272015-03-26T13:42:30Z2013-11-282015-03-26T13:42:30Z2013-03-07CALIL, Iara Pinheiro. Funcional characterization of AtWWP1, a interconnected component from geminivirus-host interactome, involved in nuclear bodies formation. 2013. 73 f. Dissertação (Mestrado em Genética animal; Genética molecular e de microrganismos; Genética quantitativa; Genética vegetal; Me) - Universidade Federal de Viçosa, Viçosa, 2013.http://locus.ufv.br/handle/123456789/4788Plants are engaged in a continuous co-evolutionary struggle for dominance with their pathogens and the outcomes of these interactions are of particular importance to human activities, as they can have dramatic effects on agricultural systems (Dodds & Rathjen, 2010). Recently, the convergence of molecular studies of plant immunity and pathogen infection strategies is revealing an integrated picture of the plant pathogen interaction (Mukhtar et al., 2011) in which the pathogen effectors interaction converge onto highly connected subgroups of proteins, named hubs. A well-defined hub form plant immune system network corresponds to CSN5A protein, a catalytic subunit of the COP9 signalosome acting as a key regulator in several basic cellular processes. Consistent with the prediction that different effectors from different pathogens target similar connections in plant-pathogen interaction network, it has been shown, independently, that the protein C2 from geminivirus, a DNA virus that infects a wide variety of agronomic crops, interacts to CNS5A (Lozano- Duran et al, 2011). Additionally, it was shown that NIG and the immune receptor NIK, both targets of geminivírus NSP, interact to CSN5A (Machado, 2011; Mukhtar et al., 2011). Based on this information, it is expected that the hub CNS5A is a functional element in the geminivirus-host interaction network. Recently, it was reported that NIG, a cellular partner of CSN5A, also interacts with a unknown function protein, encoded by the locus AT2G41020 in yeast (Machado, 2011). As a possible component from geminivirus-host interaction network converging to CSN5A, AT2G41020 may interact directly or indirectly with virulence factors in defense response or compatibility. The objectives of this research involved biochemical characterization of the protein encoded by the locus AT2G4102, designated AtWWP1, and identification of its possible interactions with viral proteins and host factors. In silico analysis of tWWP1 predicted structure revealed the presence of two WW domains, and a C-terminal domain highly conserved between homologous in plant and animals. Furthermore, it has been shown that AtWWP1 is a nuclear protein capable of forming nuclear bodies via the conserved C-terminal domain. Coimmunoprecipitation and BiFC assays demonstrated that AtWWP1 interacts in vivo with the cytoplasmic protein NIG, redirecting it to nuclear bodies. In order to explore the formative activity of nuclear bodies AtWWP1, the interaction between AtWWP1 and a second protein partner AtMBD2 (methyl CG binding domaincontaining protein) was characterized in vivo. The ability to form nuclear bodies as interaction with AtMBD2 were mapped AtWWP1 occuring via its domain and C-terminal conserved, substantiating the argument that this region of AtWWP1 is responsible for the formation of nuclear bodies. Colocalization assays have shown that nuclear bodies contained in AtWWP1 are distinct from those formed by proteins involved in RNA splicing, but colocalized with nuclear bodies containing CDKC2. Furthermore, it was demonstrated that AtWWP1 does not bind to RNA, but exhibits a binding activity to DNA. These characteristics imply that AtWWP1 should be involved with basic nuclear functions. As a component of a functional hub in geminivirus-host interaction network, it is important to assess whether the viral infection would affect the nuclear bodies formed by AtWWP1.Estudos moleculares envolvendo o sistema imune de plantas e a infecção por patógenos revelaram um panomara integrado de interações plantapatógeno em que as interações dos efetores de virulência convergem para subconjuntos de proteínas do hospedeiro altamente interconectadas e designadas hubs. Um hub funcional e bem definido do sistema imune de plantas corresponde a interconexões convergentes para a proteína CNS5A que constitui a subunidade catalítica do complexo COP9 signalosome, um regulador chave de diversos processos celulares básicos. Consistente com a previsão de que efetores de diferentes patógenos devem alvejar similares conexões na rede de interações planta-patógeno, foi demonstrado, independentemente, que a proteína C2 de geminivírus, um vírus de DNA que infecta uma grande variedade de culturas agronômicas, interage com a proteína CNS5A. Além disso, foi também demonstrado que tanto a proteína NIG, quanto o receptor imune NIK, ambos alvos da proteína NSP de geminivírus, também interagem com CNS5A. Baseado nestas informações, prevê-se que a interconexão (hub) representada por CNS5A seja um elemento funcional na interação geminivírus-hospedeiro. Recentemente, foi identificado que, além de interagir com CSN5A, a proteína NIG também interage com uma proteína de função desconhecida codificada pelo locus AT2G41020, em leveduras . Como possível componente da rede de interações geminivírus-hospedeiro que converge em CNS5A, AT2G41020 pode interagir direta ou indiretamente com fatores de virulência em resposta de defesa ou de compatibilidade. Sendo assim, os objetivos principais dessa investigação envolveram caracterização bioquímica da proteína codificada pelo locus AT2G41020 e identificação de possíveis interações com proteínas virais e fatores do hospedeiro. Análise in silico da estrutura predita da proteína codificada pelo lócus At2G41020, designada AtWWP1, revelou a presença de dois domínios WW e um domínio C-terminal altamente conservado entre proteínas homólogas de espécies vegetais e animais. Além disso, foi demonstrado que a proteína AtWWP1 é uma proteína nuclear capaz de formar corpos subnucleares via o domínio C-terminal conservado. Ensaios de coimunoprecipitação e BiFC demonstraram que AtWWP1 interage in vivo com a proteína citoplasmática NIG promovendo o seu redirecionamento para corpos nucleares. Com a finalidade de explorar a atividade formadora de corpos nucleares de AtWWP1, a interação entre AtWWP1 e uma segunda proteína parceira AtMBD2 (proteína contendo um domínio de interação com CG metilado) foi caracterizada in vivo. Tanto a capacidade de formar corpos nucleares quanto a interação com AtMBD2 foram mapeadas em AtWWP1 e ocorrem via seu domíno C-terminal conservado, substanciando o argumento de que esta região de AtWWP1 é responsável pela formação de corpos subnucleares. Ensaios de co-localização demonstraram que os corpos nucleares contidos em AtWWP1 são distintos daqueles formados por proteínas envolvidas em splicing do RNA; porém co-localizam com corpos nucleares contendo CDKC2. Além disso, foi demonstrado que AtWWP1 não liga a RNA, mas exibe uma atividade de ligação ao DNA. Estas características implicam que AtWWP1 deve estar envolvida com funções nucleares básicas. Como componente de um hub funcional na interação geminivírus-hospedeiro, torna-se relevante avaliar se a infecção viral afetaria os corpos nucleares formados por AtWWP1.Coordenação de Aperfeiçoamento de Pessoal de Nível Superiorapplication/pdfporUniversidade Federal de ViçosaMestrado em Genética e MelhoramentoUFVBRGenética animal; Genética molecular e de microrganismos; Genética quantitativa; Genética vegetal; MeInteração geminivirus-hospedeiroCorpos nuclearesGeminivirus-host interactomeNuclear bodiesCNPQ::CIENCIAS BIOLOGICAS::GENETICA::GENETICA MOLECULAR E DE MICROORGANISMOSCaracterização funcional da proteína AtWWP1, componente de uma interconexão de fatores da interação geminivirus-hospedeiro envolvido na formação de corpos subnuclearesFuncional characterization of AtWWP1, a interconnected component from geminivirus-host interactome, involved in nuclear bodies formationinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisinfo:eu-repo/semantics/openAccessreponame:LOCUS Repositório Institucional da UFVinstname:Universidade Federal de Viçosa (UFV)instacron:UFVORIGINALtexto completo.pdfapplication/pdf2281509https://locus.ufv.br//bitstream/123456789/4788/1/texto%20completo.pdf8e44475ccbcd12f91301ea5e4fda8830MD51TEXTtexto completo.pdf.txttexto completo.pdf.txtExtracted texttext/plain120033https://locus.ufv.br//bitstream/123456789/4788/2/texto%20completo.pdf.txta0d00a57e7a4654b7ad98d1c79e170a6MD52THUMBNAILtexto completo.pdf.jpgtexto completo.pdf.jpgIM Thumbnailimage/jpeg3691https://locus.ufv.br//bitstream/123456789/4788/3/texto%20completo.pdf.jpgdbc8cb8ffeb44f2f99ad0dbdbc6e98fdMD53123456789/47882016-04-10 23:14:16.146oai:locus.ufv.br:123456789/4788Repositório InstitucionalPUBhttps://www.locus.ufv.br/oai/requestfabiojreis@ufv.bropendoar:21452016-04-11T02:14:16LOCUS Repositório Institucional da UFV - Universidade Federal de Viçosa (UFV)false |
dc.title.por.fl_str_mv |
Caracterização funcional da proteína AtWWP1, componente de uma interconexão de fatores da interação geminivirus-hospedeiro envolvido na formação de corpos subnucleares |
dc.title.alternative.eng.fl_str_mv |
Funcional characterization of AtWWP1, a interconnected component from geminivirus-host interactome, involved in nuclear bodies formation |
title |
Caracterização funcional da proteína AtWWP1, componente de uma interconexão de fatores da interação geminivirus-hospedeiro envolvido na formação de corpos subnucleares |
spellingShingle |
Caracterização funcional da proteína AtWWP1, componente de uma interconexão de fatores da interação geminivirus-hospedeiro envolvido na formação de corpos subnucleares Calil, Iara Pinheiro Interação geminivirus-hospedeiro Corpos nucleares Geminivirus-host interactome Nuclear bodies CNPQ::CIENCIAS BIOLOGICAS::GENETICA::GENETICA MOLECULAR E DE MICROORGANISMOS |
title_short |
Caracterização funcional da proteína AtWWP1, componente de uma interconexão de fatores da interação geminivirus-hospedeiro envolvido na formação de corpos subnucleares |
title_full |
Caracterização funcional da proteína AtWWP1, componente de uma interconexão de fatores da interação geminivirus-hospedeiro envolvido na formação de corpos subnucleares |
title_fullStr |
Caracterização funcional da proteína AtWWP1, componente de uma interconexão de fatores da interação geminivirus-hospedeiro envolvido na formação de corpos subnucleares |
title_full_unstemmed |
Caracterização funcional da proteína AtWWP1, componente de uma interconexão de fatores da interação geminivirus-hospedeiro envolvido na formação de corpos subnucleares |
title_sort |
Caracterização funcional da proteína AtWWP1, componente de uma interconexão de fatores da interação geminivirus-hospedeiro envolvido na formação de corpos subnucleares |
author |
Calil, Iara Pinheiro |
author_facet |
Calil, Iara Pinheiro |
author_role |
author |
dc.contributor.authorLattes.por.fl_str_mv |
http://lattes.cnpq.br/9424472381660293 |
dc.contributor.author.fl_str_mv |
Calil, Iara Pinheiro |
dc.contributor.advisor-co1.fl_str_mv |
Bressan, Gustavo Costa |
dc.contributor.advisor-co1Lattes.fl_str_mv |
http://lattes.cnpq.br/1153853218347720 |
dc.contributor.advisor-co2.fl_str_mv |
Ramos, Humberto Josué de Oliveira |
dc.contributor.advisor-co2Lattes.fl_str_mv |
http://lattes.cnpq.br/4037452920080174 |
dc.contributor.advisor1.fl_str_mv |
Fontes, Elizabeth Pacheco Batista |
dc.contributor.advisor1Lattes.fl_str_mv |
http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4781848H2 |
dc.contributor.referee1.fl_str_mv |
Santos, Anésia Aparecida dos |
dc.contributor.referee1Lattes.fl_str_mv |
http://lattes.cnpq.br/8527394593088827 |
contributor_str_mv |
Bressan, Gustavo Costa Ramos, Humberto Josué de Oliveira Fontes, Elizabeth Pacheco Batista Santos, Anésia Aparecida dos |
dc.subject.por.fl_str_mv |
Interação geminivirus-hospedeiro Corpos nucleares |
topic |
Interação geminivirus-hospedeiro Corpos nucleares Geminivirus-host interactome Nuclear bodies CNPQ::CIENCIAS BIOLOGICAS::GENETICA::GENETICA MOLECULAR E DE MICROORGANISMOS |
dc.subject.eng.fl_str_mv |
Geminivirus-host interactome Nuclear bodies |
dc.subject.cnpq.fl_str_mv |
CNPQ::CIENCIAS BIOLOGICAS::GENETICA::GENETICA MOLECULAR E DE MICROORGANISMOS |
description |
Plants are engaged in a continuous co-evolutionary struggle for dominance with their pathogens and the outcomes of these interactions are of particular importance to human activities, as they can have dramatic effects on agricultural systems (Dodds & Rathjen, 2010). Recently, the convergence of molecular studies of plant immunity and pathogen infection strategies is revealing an integrated picture of the plant pathogen interaction (Mukhtar et al., 2011) in which the pathogen effectors interaction converge onto highly connected subgroups of proteins, named hubs. A well-defined hub form plant immune system network corresponds to CSN5A protein, a catalytic subunit of the COP9 signalosome acting as a key regulator in several basic cellular processes. Consistent with the prediction that different effectors from different pathogens target similar connections in plant-pathogen interaction network, it has been shown, independently, that the protein C2 from geminivirus, a DNA virus that infects a wide variety of agronomic crops, interacts to CNS5A (Lozano- Duran et al, 2011). Additionally, it was shown that NIG and the immune receptor NIK, both targets of geminivírus NSP, interact to CSN5A (Machado, 2011; Mukhtar et al., 2011). Based on this information, it is expected that the hub CNS5A is a functional element in the geminivirus-host interaction network. Recently, it was reported that NIG, a cellular partner of CSN5A, also interacts with a unknown function protein, encoded by the locus AT2G41020 in yeast (Machado, 2011). As a possible component from geminivirus-host interaction network converging to CSN5A, AT2G41020 may interact directly or indirectly with virulence factors in defense response or compatibility. The objectives of this research involved biochemical characterization of the protein encoded by the locus AT2G4102, designated AtWWP1, and identification of its possible interactions with viral proteins and host factors. In silico analysis of tWWP1 predicted structure revealed the presence of two WW domains, and a C-terminal domain highly conserved between homologous in plant and animals. Furthermore, it has been shown that AtWWP1 is a nuclear protein capable of forming nuclear bodies via the conserved C-terminal domain. Coimmunoprecipitation and BiFC assays demonstrated that AtWWP1 interacts in vivo with the cytoplasmic protein NIG, redirecting it to nuclear bodies. In order to explore the formative activity of nuclear bodies AtWWP1, the interaction between AtWWP1 and a second protein partner AtMBD2 (methyl CG binding domaincontaining protein) was characterized in vivo. The ability to form nuclear bodies as interaction with AtMBD2 were mapped AtWWP1 occuring via its domain and C-terminal conserved, substantiating the argument that this region of AtWWP1 is responsible for the formation of nuclear bodies. Colocalization assays have shown that nuclear bodies contained in AtWWP1 are distinct from those formed by proteins involved in RNA splicing, but colocalized with nuclear bodies containing CDKC2. Furthermore, it was demonstrated that AtWWP1 does not bind to RNA, but exhibits a binding activity to DNA. These characteristics imply that AtWWP1 should be involved with basic nuclear functions. As a component of a functional hub in geminivirus-host interaction network, it is important to assess whether the viral infection would affect the nuclear bodies formed by AtWWP1. |
publishDate |
2013 |
dc.date.available.fl_str_mv |
2013-11-28 2015-03-26T13:42:30Z |
dc.date.issued.fl_str_mv |
2013-03-07 |
dc.date.accessioned.fl_str_mv |
2015-03-26T13:42:30Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/masterThesis |
format |
masterThesis |
status_str |
publishedVersion |
dc.identifier.citation.fl_str_mv |
CALIL, Iara Pinheiro. Funcional characterization of AtWWP1, a interconnected component from geminivirus-host interactome, involved in nuclear bodies formation. 2013. 73 f. Dissertação (Mestrado em Genética animal; Genética molecular e de microrganismos; Genética quantitativa; Genética vegetal; Me) - Universidade Federal de Viçosa, Viçosa, 2013. |
dc.identifier.uri.fl_str_mv |
http://locus.ufv.br/handle/123456789/4788 |
identifier_str_mv |
CALIL, Iara Pinheiro. Funcional characterization of AtWWP1, a interconnected component from geminivirus-host interactome, involved in nuclear bodies formation. 2013. 73 f. Dissertação (Mestrado em Genética animal; Genética molecular e de microrganismos; Genética quantitativa; Genética vegetal; Me) - Universidade Federal de Viçosa, Viçosa, 2013. |
url |
http://locus.ufv.br/handle/123456789/4788 |
dc.language.iso.fl_str_mv |
por |
language |
por |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
Universidade Federal de Viçosa |
dc.publisher.program.fl_str_mv |
Mestrado em Genética e Melhoramento |
dc.publisher.initials.fl_str_mv |
UFV |
dc.publisher.country.fl_str_mv |
BR |
dc.publisher.department.fl_str_mv |
Genética animal; Genética molecular e de microrganismos; Genética quantitativa; Genética vegetal; Me |
publisher.none.fl_str_mv |
Universidade Federal de Viçosa |
dc.source.none.fl_str_mv |
reponame:LOCUS Repositório Institucional da UFV instname:Universidade Federal de Viçosa (UFV) instacron:UFV |
instname_str |
Universidade Federal de Viçosa (UFV) |
instacron_str |
UFV |
institution |
UFV |
reponame_str |
LOCUS Repositório Institucional da UFV |
collection |
LOCUS Repositório Institucional da UFV |
bitstream.url.fl_str_mv |
https://locus.ufv.br//bitstream/123456789/4788/1/texto%20completo.pdf https://locus.ufv.br//bitstream/123456789/4788/2/texto%20completo.pdf.txt https://locus.ufv.br//bitstream/123456789/4788/3/texto%20completo.pdf.jpg |
bitstream.checksum.fl_str_mv |
8e44475ccbcd12f91301ea5e4fda8830 a0d00a57e7a4654b7ad98d1c79e170a6 dbc8cb8ffeb44f2f99ad0dbdbc6e98fd |
bitstream.checksumAlgorithm.fl_str_mv |
MD5 MD5 MD5 |
repository.name.fl_str_mv |
LOCUS Repositório Institucional da UFV - Universidade Federal de Viçosa (UFV) |
repository.mail.fl_str_mv |
fabiojreis@ufv.br |
_version_ |
1801213133245644800 |