Transcriptional profiling during foetal skeletal muscle development of Piau and Yorkshire–Landrace cross-bred pigs

Detalhes bibliográficos
Autor(a) principal: Sollero, B. P.
Data de Publicação: 2011
Outros Autores: Guimarães, S. E. F., Rilington, V. D., Tempelman, R. J., Raney, N. E., Steibel, J. P., Guimarães, J. D., Lopes, P. S., Lopes, M. S., Ernst, C. W.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: LOCUS Repositório Institucional da UFV
Texto Completo: http://dx.doi.org/10.1111/j.1365-2052.2011.02186.x
http://www.locus.ufv.br/handle/123456789/23302
Resumo: Skeletal muscle development is a complex process involving the coordinated expression of thousands of genes. The aim of this study was to identify differentially expressed genes in longissimus dorsi (LD) muscle of pigs at 40 and 70 days (d) of gestation (developmental stages encompassing primary and secondary fibre formation) in Yorkshire–Landrace (YL) cross-bred pigs and Piau pigs (a naturalized Brazilian breed), which are two breed types that differ in muscularity. Foetuses were obtained from gilts at each gestational age (n = 3 YL; n = 4 Piau), and transcriptional profiling was performed using the Pigoligoarray microarray containing 20 400 oligonucleotides. A total of 486 oligonucleotides were differentially expressed (fold change (FC) ‡ 1.5; false discovery rate (FDR) £ 0.05) between 40 and 70 d gestation in either YL or Piau pigs, and a total of 1300 oligonucleotides were differentially expressed (FC ‡ 1.5; FDR £ 0.05) between YL and Piau pigs at either age. Gene ontology annotation and pathway analyses determined functional classifications for differentially expressed genes and revealed breed type–specific developmental expression patterns. Thirteen genes were selected for confirmation by qRT-PCR analyses, and expression patterns for most of these genes were confirmed, providing further insight into the roles of these genes in pig muscle development. This study revealed both developmental and breed type–specific patterns of gene expression in foetal pig skeletal muscle, including genes not previously associated with myogenesis. This information will contribute to future pig genetic improvement efforts.
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spelling Sollero, B. P.Guimarães, S. E. F.Rilington, V. D.Tempelman, R. J.Raney, N. E.Steibel, J. P.Guimarães, J. D.Lopes, P. S.Lopes, M. S.Ernst, C. W.2019-02-01T11:38:44Z2019-02-01T11:38:44Z2011-121365-2052http://dx.doi.org/10.1111/j.1365-2052.2011.02186.xhttp://www.locus.ufv.br/handle/123456789/23302Skeletal muscle development is a complex process involving the coordinated expression of thousands of genes. The aim of this study was to identify differentially expressed genes in longissimus dorsi (LD) muscle of pigs at 40 and 70 days (d) of gestation (developmental stages encompassing primary and secondary fibre formation) in Yorkshire–Landrace (YL) cross-bred pigs and Piau pigs (a naturalized Brazilian breed), which are two breed types that differ in muscularity. Foetuses were obtained from gilts at each gestational age (n = 3 YL; n = 4 Piau), and transcriptional profiling was performed using the Pigoligoarray microarray containing 20 400 oligonucleotides. A total of 486 oligonucleotides were differentially expressed (fold change (FC) ‡ 1.5; false discovery rate (FDR) £ 0.05) between 40 and 70 d gestation in either YL or Piau pigs, and a total of 1300 oligonucleotides were differentially expressed (FC ‡ 1.5; FDR £ 0.05) between YL and Piau pigs at either age. Gene ontology annotation and pathway analyses determined functional classifications for differentially expressed genes and revealed breed type–specific developmental expression patterns. Thirteen genes were selected for confirmation by qRT-PCR analyses, and expression patterns for most of these genes were confirmed, providing further insight into the roles of these genes in pig muscle development. This study revealed both developmental and breed type–specific patterns of gene expression in foetal pig skeletal muscle, including genes not previously associated with myogenesis. This information will contribute to future pig genetic improvement efforts.engAnimal GeneticsVolume 42, Issue 6, Pages 600- 612, December 2011Foetal skeletal musclePigTranscriptional profilingTranscriptional profiling during foetal skeletal muscle development of Piau and Yorkshire–Landrace cross-bred pigsinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfinfo:eu-repo/semantics/openAccessreponame:LOCUS Repositório Institucional da UFVinstname:Universidade Federal de Viçosa (UFV)instacron:UFVORIGINALartigo.pdfartigo.pdftexto completoapplication/pdf519752https://locus.ufv.br//bitstream/123456789/23302/1/artigo.pdf6a700b8fdf6f7af56abb4a4de5aad125MD51LICENSElicense.txtlicense.txttext/plain; charset=utf-81748https://locus.ufv.br//bitstream/123456789/23302/2/license.txt8a4605be74aa9ea9d79846c1fba20a33MD52123456789/233022019-02-01 10:00:20.262oai:locus.ufv.br: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Repositório InstitucionalPUBhttps://www.locus.ufv.br/oai/requestfabiojreis@ufv.bropendoar:21452019-02-01T13:00:20LOCUS Repositório Institucional da UFV - Universidade Federal de Viçosa (UFV)false
dc.title.en.fl_str_mv Transcriptional profiling during foetal skeletal muscle development of Piau and Yorkshire–Landrace cross-bred pigs
title Transcriptional profiling during foetal skeletal muscle development of Piau and Yorkshire–Landrace cross-bred pigs
spellingShingle Transcriptional profiling during foetal skeletal muscle development of Piau and Yorkshire–Landrace cross-bred pigs
Sollero, B. P.
Foetal skeletal muscle
Pig
Transcriptional profiling
title_short Transcriptional profiling during foetal skeletal muscle development of Piau and Yorkshire–Landrace cross-bred pigs
title_full Transcriptional profiling during foetal skeletal muscle development of Piau and Yorkshire–Landrace cross-bred pigs
title_fullStr Transcriptional profiling during foetal skeletal muscle development of Piau and Yorkshire–Landrace cross-bred pigs
title_full_unstemmed Transcriptional profiling during foetal skeletal muscle development of Piau and Yorkshire–Landrace cross-bred pigs
title_sort Transcriptional profiling during foetal skeletal muscle development of Piau and Yorkshire–Landrace cross-bred pigs
author Sollero, B. P.
author_facet Sollero, B. P.
Guimarães, S. E. F.
Rilington, V. D.
Tempelman, R. J.
Raney, N. E.
Steibel, J. P.
Guimarães, J. D.
Lopes, P. S.
Lopes, M. S.
Ernst, C. W.
author_role author
author2 Guimarães, S. E. F.
Rilington, V. D.
Tempelman, R. J.
Raney, N. E.
Steibel, J. P.
Guimarães, J. D.
Lopes, P. S.
Lopes, M. S.
Ernst, C. W.
author2_role author
author
author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Sollero, B. P.
Guimarães, S. E. F.
Rilington, V. D.
Tempelman, R. J.
Raney, N. E.
Steibel, J. P.
Guimarães, J. D.
Lopes, P. S.
Lopes, M. S.
Ernst, C. W.
dc.subject.pt-BR.fl_str_mv Foetal skeletal muscle
Pig
Transcriptional profiling
topic Foetal skeletal muscle
Pig
Transcriptional profiling
description Skeletal muscle development is a complex process involving the coordinated expression of thousands of genes. The aim of this study was to identify differentially expressed genes in longissimus dorsi (LD) muscle of pigs at 40 and 70 days (d) of gestation (developmental stages encompassing primary and secondary fibre formation) in Yorkshire–Landrace (YL) cross-bred pigs and Piau pigs (a naturalized Brazilian breed), which are two breed types that differ in muscularity. Foetuses were obtained from gilts at each gestational age (n = 3 YL; n = 4 Piau), and transcriptional profiling was performed using the Pigoligoarray microarray containing 20 400 oligonucleotides. A total of 486 oligonucleotides were differentially expressed (fold change (FC) ‡ 1.5; false discovery rate (FDR) £ 0.05) between 40 and 70 d gestation in either YL or Piau pigs, and a total of 1300 oligonucleotides were differentially expressed (FC ‡ 1.5; FDR £ 0.05) between YL and Piau pigs at either age. Gene ontology annotation and pathway analyses determined functional classifications for differentially expressed genes and revealed breed type–specific developmental expression patterns. Thirteen genes were selected for confirmation by qRT-PCR analyses, and expression patterns for most of these genes were confirmed, providing further insight into the roles of these genes in pig muscle development. This study revealed both developmental and breed type–specific patterns of gene expression in foetal pig skeletal muscle, including genes not previously associated with myogenesis. This information will contribute to future pig genetic improvement efforts.
publishDate 2011
dc.date.issued.fl_str_mv 2011-12
dc.date.accessioned.fl_str_mv 2019-02-01T11:38:44Z
dc.date.available.fl_str_mv 2019-02-01T11:38:44Z
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dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1111/j.1365-2052.2011.02186.x
http://www.locus.ufv.br/handle/123456789/23302
dc.identifier.issn.none.fl_str_mv 1365-2052
identifier_str_mv 1365-2052
url http://dx.doi.org/10.1111/j.1365-2052.2011.02186.x
http://www.locus.ufv.br/handle/123456789/23302
dc.language.iso.fl_str_mv eng
language eng
dc.relation.ispartofseries.pt-BR.fl_str_mv Volume 42, Issue 6, Pages 600- 612, December 2011
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dc.publisher.none.fl_str_mv Animal Genetics
publisher.none.fl_str_mv Animal Genetics
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