Updated angiosperm family tree for analyzing phylogenetic diversity and community structure

Detalhes bibliográficos
Autor(a) principal: Gastauer, Markus
Data de Publicação: 2017
Outros Autores: Meira Neto, João Augusto Alves
Tipo de documento: Artigo
Idioma: eng
Título da fonte: LOCUS Repositório Institucional da UFV
Texto Completo: http://dx.doi.org/10.1590/0102-33062016abb0306
http://www.locus.ufv.br/handle/123456789/25307
Resumo: The computation of phylogenetic diversity and phylogenetic community structure demands an accurately calibrated, high-resolution phylogeny, which reflects current knowledge regarding diversification within the group of interest. Herein we present the angiosperm phylogeny R20160415.new, which is based on the topology proposed by the Angiosperm Phylogeny Group IV, a recently released compilation of angiosperm diversification. R20160415.new is calibratable by different sets of recently published estimates of mean node ages. Its application for the computation of phylogenetic diversity and/or phylogenetic community structure is straightforward and ensures the inclusion of up-to-date information in user specific applications, as long as users are familiar with the pitfalls of such hand-made supertrees.
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spelling Gastauer, MarkusMeira Neto, João Augusto Alves2019-05-21T12:04:51Z2019-05-21T12:04:51Z2017-041677941Xhttp://dx.doi.org/10.1590/0102-33062016abb0306http://www.locus.ufv.br/handle/123456789/25307The computation of phylogenetic diversity and phylogenetic community structure demands an accurately calibrated, high-resolution phylogeny, which reflects current knowledge regarding diversification within the group of interest. Herein we present the angiosperm phylogeny R20160415.new, which is based on the topology proposed by the Angiosperm Phylogeny Group IV, a recently released compilation of angiosperm diversification. R20160415.new is calibratable by different sets of recently published estimates of mean node ages. Its application for the computation of phylogenetic diversity and/or phylogenetic community structure is straightforward and ensures the inclusion of up-to-date information in user specific applications, as long as users are familiar with the pitfalls of such hand-made supertrees.engActa Botanica Brasilicav. 31, n. 02, p. 191- 198. apr./ jun. 2017Angiosperm diversificationAPG IVCommunity tree calibrationMegatreesPhylogenetic topologyUpdated angiosperm family tree for analyzing phylogenetic diversity and community structureinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfinfo:eu-repo/semantics/openAccessreponame:LOCUS Repositório Institucional da UFVinstname:Universidade Federal de Viçosa (UFV)instacron:UFVORIGINALartigo.pdfartigo.pdftexto completoapplication/pdf2430946https://locus.ufv.br//bitstream/123456789/25307/1/artigo.pdf18319d7620840e7c5286aaa81197ef1dMD51LICENSElicense.txtlicense.txttext/plain; charset=utf-81748https://locus.ufv.br//bitstream/123456789/25307/2/license.txt8a4605be74aa9ea9d79846c1fba20a33MD52123456789/253072019-05-21 09:06:53.369oai:locus.ufv.br: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Repositório InstitucionalPUBhttps://www.locus.ufv.br/oai/requestfabiojreis@ufv.bropendoar:21452019-05-21T12:06:53LOCUS Repositório Institucional da UFV - Universidade Federal de Viçosa (UFV)false
dc.title.en.fl_str_mv Updated angiosperm family tree for analyzing phylogenetic diversity and community structure
title Updated angiosperm family tree for analyzing phylogenetic diversity and community structure
spellingShingle Updated angiosperm family tree for analyzing phylogenetic diversity and community structure
Gastauer, Markus
Angiosperm diversification
APG IV
Community tree calibration
Megatrees
Phylogenetic topology
title_short Updated angiosperm family tree for analyzing phylogenetic diversity and community structure
title_full Updated angiosperm family tree for analyzing phylogenetic diversity and community structure
title_fullStr Updated angiosperm family tree for analyzing phylogenetic diversity and community structure
title_full_unstemmed Updated angiosperm family tree for analyzing phylogenetic diversity and community structure
title_sort Updated angiosperm family tree for analyzing phylogenetic diversity and community structure
author Gastauer, Markus
author_facet Gastauer, Markus
Meira Neto, João Augusto Alves
author_role author
author2 Meira Neto, João Augusto Alves
author2_role author
dc.contributor.author.fl_str_mv Gastauer, Markus
Meira Neto, João Augusto Alves
dc.subject.pt-BR.fl_str_mv Angiosperm diversification
APG IV
Community tree calibration
Megatrees
Phylogenetic topology
topic Angiosperm diversification
APG IV
Community tree calibration
Megatrees
Phylogenetic topology
description The computation of phylogenetic diversity and phylogenetic community structure demands an accurately calibrated, high-resolution phylogeny, which reflects current knowledge regarding diversification within the group of interest. Herein we present the angiosperm phylogeny R20160415.new, which is based on the topology proposed by the Angiosperm Phylogeny Group IV, a recently released compilation of angiosperm diversification. R20160415.new is calibratable by different sets of recently published estimates of mean node ages. Its application for the computation of phylogenetic diversity and/or phylogenetic community structure is straightforward and ensures the inclusion of up-to-date information in user specific applications, as long as users are familiar with the pitfalls of such hand-made supertrees.
publishDate 2017
dc.date.issued.fl_str_mv 2017-04
dc.date.accessioned.fl_str_mv 2019-05-21T12:04:51Z
dc.date.available.fl_str_mv 2019-05-21T12:04:51Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1590/0102-33062016abb0306
http://www.locus.ufv.br/handle/123456789/25307
dc.identifier.issn.none.fl_str_mv 1677941X
identifier_str_mv 1677941X
url http://dx.doi.org/10.1590/0102-33062016abb0306
http://www.locus.ufv.br/handle/123456789/25307
dc.language.iso.fl_str_mv eng
language eng
dc.relation.ispartofseries.pt-BR.fl_str_mv v. 31, n. 02, p. 191- 198. apr./ jun. 2017
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Acta Botanica Brasilica
publisher.none.fl_str_mv Acta Botanica Brasilica
dc.source.none.fl_str_mv reponame:LOCUS Repositório Institucional da UFV
instname:Universidade Federal de Viçosa (UFV)
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instname_str Universidade Federal de Viçosa (UFV)
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reponame_str LOCUS Repositório Institucional da UFV
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bitstream.url.fl_str_mv https://locus.ufv.br//bitstream/123456789/25307/1/artigo.pdf
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