Análise de sobrevivência do tomateiro a Phytophthora infestans
Autor(a) principal: | |
---|---|
Data de Publicação: | 2008 |
Tipo de documento: | Dissertação |
Idioma: | por |
Título da fonte: | LOCUS Repositório Institucional da UFV |
Texto Completo: | http://locus.ufv.br/handle/123456789/4014 |
Resumo: | Reburning caused by Phytophthora infestansis is characterized as an aggressive disease of great destructive impact, capable of limiting or even hindering the economic cultivation of the tomato plant under conditions of high humidity and low temperatures. In view of the problems reburning can cause to tomato plant crops, this work aimed to: 1) fit models to describe the progress of the disease and form groups of tomato accesses with similar curves; 2) estimate data referring to the number of days to reach 5% severity of the disease, by means of inverse regression; 3) fit survival curves by means of the Kaplan-Meier estimator for the access groups and compare them by means of the Logrank test;4)fit survival curves by means of probabilistic models and compare these curves with Kaplan Meir´s non-parametric technique. Using tomato reburning real data, it was possible to fit the exponential model (Y = y0 exp (rX)) to describe the disease s progress. The means of the parameter estimates were submitted to grouping analysis using the centroid method, generating 10 access groups. Time up to 5% of the disease was calculated via inverse regression. Non-parametric techniques were used to estimate survival function by means of the Kaplan-Meier´s estimator to compare the survival curves by the Logrank test .The survival function was also fit using the probabilistic models, exponential Weibull and Log-normal, respectively, which were compared by means of the verisimilitude ratio test (VRT), considering the generalized Gamma model, as a general case for these models. The methodology applied allowed fitting the exponential model to describe tomato plant reburning progress and to regroup the accesses studied in the 10 groups. The access BGH-6 obtained a smaller disease progress than the others, thus characterizing its higher resistance to the disease; An inverse regression allowed time estimation up to the occurrence of 5% of the severity of the tomato plant reburning. The Kaplan-Meier ´s non-parametric technique allowed estimating the survival curves of the tomato plant accesses belonging to the groups 1, 2, 4, 6 and 8. Utilizing the Logrank test, it could be concluded that most two-by-two comparisons were significant (p<0.05), except in the comparisons of groups 2x4, 4x8 and 6x8. The use of the probabilistic models, exponential Weibull and Log-normal allowed estimating the survival curves of groups 2, 4, 6 and 8, except for group 4, to which the Weibull model was not adequate. Comparing the probabilistic models with the non-parametric technique, the curves of the probabilistic models of groups 2 and 4 presented satisfactory results, compared to the curve estimated by Kaplan-Meier. |
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Araujo, Maria Nilsa Martins dehttp://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4248466E9Silva, Fabyano Fonseca ehttp://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4766260Z2Cecon, Paulo Robertohttp://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4788114T5Martins Filho, Sebastiãohttp://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4723282T5Carneiro, Antônio Policarpo Souzahttp://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4799449E8Cota, Luciano Vianahttp://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4778995H62015-03-26T13:32:04Z2008-11-242015-03-26T13:32:04Z2008-09-05ARAUJO, Maria Nilsa Martins de. Analysis of the survival of the tomato plant Phytophthora infestans. 2008. 66 f. Dissertação (Mestrado em Estatística Aplicada e Biometria) - Universidade Federal de Viçosa, Viçosa, 2008.http://locus.ufv.br/handle/123456789/4014Reburning caused by Phytophthora infestansis is characterized as an aggressive disease of great destructive impact, capable of limiting or even hindering the economic cultivation of the tomato plant under conditions of high humidity and low temperatures. In view of the problems reburning can cause to tomato plant crops, this work aimed to: 1) fit models to describe the progress of the disease and form groups of tomato accesses with similar curves; 2) estimate data referring to the number of days to reach 5% severity of the disease, by means of inverse regression; 3) fit survival curves by means of the Kaplan-Meier estimator for the access groups and compare them by means of the Logrank test;4)fit survival curves by means of probabilistic models and compare these curves with Kaplan Meir´s non-parametric technique. Using tomato reburning real data, it was possible to fit the exponential model (Y = y0 exp (rX)) to describe the disease s progress. The means of the parameter estimates were submitted to grouping analysis using the centroid method, generating 10 access groups. Time up to 5% of the disease was calculated via inverse regression. Non-parametric techniques were used to estimate survival function by means of the Kaplan-Meier´s estimator to compare the survival curves by the Logrank test .The survival function was also fit using the probabilistic models, exponential Weibull and Log-normal, respectively, which were compared by means of the verisimilitude ratio test (VRT), considering the generalized Gamma model, as a general case for these models. The methodology applied allowed fitting the exponential model to describe tomato plant reburning progress and to regroup the accesses studied in the 10 groups. The access BGH-6 obtained a smaller disease progress than the others, thus characterizing its higher resistance to the disease; An inverse regression allowed time estimation up to the occurrence of 5% of the severity of the tomato plant reburning. The Kaplan-Meier ´s non-parametric technique allowed estimating the survival curves of the tomato plant accesses belonging to the groups 1, 2, 4, 6 and 8. Utilizing the Logrank test, it could be concluded that most two-by-two comparisons were significant (p<0.05), except in the comparisons of groups 2x4, 4x8 and 6x8. The use of the probabilistic models, exponential Weibull and Log-normal allowed estimating the survival curves of groups 2, 4, 6 and 8, except for group 4, to which the Weibull model was not adequate. Comparing the probabilistic models with the non-parametric technique, the curves of the probabilistic models of groups 2 and 4 presented satisfactory results, compared to the curve estimated by Kaplan-Meier.A requeima causada por Phytophthora infestans caracteriza-se por ser uma doença agressiva e de grande impacto destrutivo, podendo limitar ou até mesmo impedir o cultivo econômico do tomateiro sob condições de alta umidade e baixas temperaturas. Diante dos problemas que a requeima pode provocar às lavouras de tomate, este trabalho teve por objetivos: 1) ajustar modelos para descrever o progresso da doença e formar grupos de acessos de tomateiro com curvas semelhantes; 2) estimar dados referentes ao número de dias até atingir 5% de severidade da doença, por meio de regressão inversa; 3) ajustar curvas de sobrevivência por meio do estimador de Kaplan-Meier para grupos de acessos e compará-las mediante o uso do teste Logrank; 4) ajustar curvas de sobrevivência por meio de modelos probabilísticos e compará-las com a técnica não-paramétrica de Kaplan-Meier. Utilizando dados reais sobre a requeima do tomateiro, foi possível ajustar o modelo exponencial (Y = y0 exp (rX)) para descrever o progresso da doença. As médias das estimativas dos parâmetros foram submetidas à análise de agrupamento pelo método Centróide, o que gerou 10 grupos de acessos, sendo o tempo até a incidência de 5% da doença calculado via regressão inversa. Foram utilizadas técnicas não-paramétricas para estimar a função de sobrevivência por meio do estimador de Kaplan-Meier e para comparar as curvas de sobrevivência pelo teste Logrank. Foi também ajustada a função de sobrevivência, empregando-se os modelos probabilísticos Exponencial, Weibull e Log-normal, os quais foram comparados por meio do Teste da Razão da Verossimilhança (TRV), considerando-se o modelo Gama generalizado por ser caso geral para esses modelos. A metodologia utilizada permitiu ajustar o modelo Exponencial para descrever o progresso da requeima do tomateiro e agrupar os acessos estudados em 10 grupos. O acesso BGH-6 sofreu um progresso de doença menor que os demais, caracterizando-se, assim, sua maior resistência à enfermidade. A regressão inversa possibilitou estimar o tempo até a ocorrência de 5% da severidade da requeima do tomateiro. Pela técnica não-paramétrica de Kaplan-Meier, foi possível estimar as curvas de sobrevivência dos acessos de tomateiro pertencentes aos grupos 1, 2, 4, 6 e 8. Utilizando o teste Logrank, pode-se concluir que a maioria das comparações duas a duas foi significativa (p<0,05), exceto nas comparações dos grupos 2x4, 4x8 e 6x8. O uso dos modelos probabilísticos Exponencial, Weibull e Log-normal possibilitou a estimação das curvas de sobrevivência nos grupos 2, 4, 6 e 8, exceto no grupo 4, em que o modelo Weibull não foi adequado. Comparando os modelos probabilísticos com a técnica não-paramétrica, as curvas dos modelos probabilísticos dos grupos 2 e 4 apresentaram ajustes satisfatórios com relação à curva estimada por Kaplan-Meier.Coordenação de Aperfeiçoamento de Pessoal de Nível Superiorapplication/pdfporUniversidade Federal de ViçosaMestrado em Estatística Aplicada e BiometriaUFVBREstatística Aplicada e BiometriaCurvas de progresso de doençaKaplan-MeierTeste logrankModelo exponencialModelo WeibullModelo Log-normalProgress of the disease curveKaplan-MeierLogrank testExponential modelWeibull modelLog-normal modelCNPQ::CIENCIAS AGRARIASAnálise de sobrevivência do tomateiro a Phytophthora infestansAnalysis of the survival of the tomato plant Phytophthora infestansinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisinfo:eu-repo/semantics/openAccessreponame:LOCUS Repositório Institucional da UFVinstname:Universidade Federal de Viçosa (UFV)instacron:UFVORIGINALtexto completo.pdfapplication/pdf569181https://locus.ufv.br//bitstream/123456789/4014/1/texto%20completo.pdf1b525772884dca74fcef6c9c8033aaa5MD51TEXTtexto completo.pdf.txttexto completo.pdf.txtExtracted texttext/plain111839https://locus.ufv.br//bitstream/123456789/4014/2/texto%20completo.pdf.txt2f9985493952400f04d62798e96aa95aMD52THUMBNAILtexto completo.pdf.jpgtexto completo.pdf.jpgIM Thumbnailimage/jpeg3540https://locus.ufv.br//bitstream/123456789/4014/3/texto%20completo.pdf.jpge95abb22cbe6a3829e3947e730e8cbe4MD53123456789/40142016-04-09 23:16:29.196oai:locus.ufv.br:123456789/4014Repositório InstitucionalPUBhttps://www.locus.ufv.br/oai/requestfabiojreis@ufv.bropendoar:21452016-04-10T02:16:29LOCUS Repositório Institucional da UFV - Universidade Federal de Viçosa (UFV)false |
dc.title.por.fl_str_mv |
Análise de sobrevivência do tomateiro a Phytophthora infestans |
dc.title.alternative.eng.fl_str_mv |
Analysis of the survival of the tomato plant Phytophthora infestans |
title |
Análise de sobrevivência do tomateiro a Phytophthora infestans |
spellingShingle |
Análise de sobrevivência do tomateiro a Phytophthora infestans Araujo, Maria Nilsa Martins de Curvas de progresso de doença Kaplan-Meier Teste logrank Modelo exponencial Modelo Weibull Modelo Log-normal Progress of the disease curve Kaplan-Meier Logrank test Exponential model Weibull model Log-normal model CNPQ::CIENCIAS AGRARIAS |
title_short |
Análise de sobrevivência do tomateiro a Phytophthora infestans |
title_full |
Análise de sobrevivência do tomateiro a Phytophthora infestans |
title_fullStr |
Análise de sobrevivência do tomateiro a Phytophthora infestans |
title_full_unstemmed |
Análise de sobrevivência do tomateiro a Phytophthora infestans |
title_sort |
Análise de sobrevivência do tomateiro a Phytophthora infestans |
author |
Araujo, Maria Nilsa Martins de |
author_facet |
Araujo, Maria Nilsa Martins de |
author_role |
author |
dc.contributor.authorLattes.por.fl_str_mv |
http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4248466E9 |
dc.contributor.author.fl_str_mv |
Araujo, Maria Nilsa Martins de |
dc.contributor.advisor-co1.fl_str_mv |
Silva, Fabyano Fonseca e |
dc.contributor.advisor-co1Lattes.fl_str_mv |
http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4766260Z2 |
dc.contributor.advisor-co2.fl_str_mv |
Cecon, Paulo Roberto |
dc.contributor.advisor-co2Lattes.fl_str_mv |
http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4788114T5 |
dc.contributor.advisor1.fl_str_mv |
Martins Filho, Sebastião |
dc.contributor.advisor1Lattes.fl_str_mv |
http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4723282T5 |
dc.contributor.referee1.fl_str_mv |
Carneiro, Antônio Policarpo Souza |
dc.contributor.referee1Lattes.fl_str_mv |
http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4799449E8 |
dc.contributor.referee2.fl_str_mv |
Cota, Luciano Viana |
dc.contributor.referee2Lattes.fl_str_mv |
http://buscatextual.cnpq.br/buscatextual/visualizacv.do?id=K4778995H6 |
contributor_str_mv |
Silva, Fabyano Fonseca e Cecon, Paulo Roberto Martins Filho, Sebastião Carneiro, Antônio Policarpo Souza Cota, Luciano Viana |
dc.subject.por.fl_str_mv |
Curvas de progresso de doença Kaplan-Meier Teste logrank Modelo exponencial Modelo Weibull Modelo Log-normal |
topic |
Curvas de progresso de doença Kaplan-Meier Teste logrank Modelo exponencial Modelo Weibull Modelo Log-normal Progress of the disease curve Kaplan-Meier Logrank test Exponential model Weibull model Log-normal model CNPQ::CIENCIAS AGRARIAS |
dc.subject.eng.fl_str_mv |
Progress of the disease curve Kaplan-Meier Logrank test Exponential model Weibull model Log-normal model |
dc.subject.cnpq.fl_str_mv |
CNPQ::CIENCIAS AGRARIAS |
description |
Reburning caused by Phytophthora infestansis is characterized as an aggressive disease of great destructive impact, capable of limiting or even hindering the economic cultivation of the tomato plant under conditions of high humidity and low temperatures. In view of the problems reburning can cause to tomato plant crops, this work aimed to: 1) fit models to describe the progress of the disease and form groups of tomato accesses with similar curves; 2) estimate data referring to the number of days to reach 5% severity of the disease, by means of inverse regression; 3) fit survival curves by means of the Kaplan-Meier estimator for the access groups and compare them by means of the Logrank test;4)fit survival curves by means of probabilistic models and compare these curves with Kaplan Meir´s non-parametric technique. Using tomato reburning real data, it was possible to fit the exponential model (Y = y0 exp (rX)) to describe the disease s progress. The means of the parameter estimates were submitted to grouping analysis using the centroid method, generating 10 access groups. Time up to 5% of the disease was calculated via inverse regression. Non-parametric techniques were used to estimate survival function by means of the Kaplan-Meier´s estimator to compare the survival curves by the Logrank test .The survival function was also fit using the probabilistic models, exponential Weibull and Log-normal, respectively, which were compared by means of the verisimilitude ratio test (VRT), considering the generalized Gamma model, as a general case for these models. The methodology applied allowed fitting the exponential model to describe tomato plant reburning progress and to regroup the accesses studied in the 10 groups. The access BGH-6 obtained a smaller disease progress than the others, thus characterizing its higher resistance to the disease; An inverse regression allowed time estimation up to the occurrence of 5% of the severity of the tomato plant reburning. The Kaplan-Meier ´s non-parametric technique allowed estimating the survival curves of the tomato plant accesses belonging to the groups 1, 2, 4, 6 and 8. Utilizing the Logrank test, it could be concluded that most two-by-two comparisons were significant (p<0.05), except in the comparisons of groups 2x4, 4x8 and 6x8. The use of the probabilistic models, exponential Weibull and Log-normal allowed estimating the survival curves of groups 2, 4, 6 and 8, except for group 4, to which the Weibull model was not adequate. Comparing the probabilistic models with the non-parametric technique, the curves of the probabilistic models of groups 2 and 4 presented satisfactory results, compared to the curve estimated by Kaplan-Meier. |
publishDate |
2008 |
dc.date.available.fl_str_mv |
2008-11-24 2015-03-26T13:32:04Z |
dc.date.issued.fl_str_mv |
2008-09-05 |
dc.date.accessioned.fl_str_mv |
2015-03-26T13:32:04Z |
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info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/masterThesis |
format |
masterThesis |
status_str |
publishedVersion |
dc.identifier.citation.fl_str_mv |
ARAUJO, Maria Nilsa Martins de. Analysis of the survival of the tomato plant Phytophthora infestans. 2008. 66 f. Dissertação (Mestrado em Estatística Aplicada e Biometria) - Universidade Federal de Viçosa, Viçosa, 2008. |
dc.identifier.uri.fl_str_mv |
http://locus.ufv.br/handle/123456789/4014 |
identifier_str_mv |
ARAUJO, Maria Nilsa Martins de. Analysis of the survival of the tomato plant Phytophthora infestans. 2008. 66 f. Dissertação (Mestrado em Estatística Aplicada e Biometria) - Universidade Federal de Viçosa, Viçosa, 2008. |
url |
http://locus.ufv.br/handle/123456789/4014 |
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Universidade Federal de Viçosa |
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Mestrado em Estatística Aplicada e Biometria |
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UFV |
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BR |
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Estatística Aplicada e Biometria |
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Universidade Federal de Viçosa |
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