Analysis of the full-length genome sequence of papaya lethal yellowing virus (PLYV), determined by deep sequencing, confirms its classification in the genus Sobemovirus

Detalhes bibliográficos
Autor(a) principal: Pereira, Álvaro J.
Data de Publicação: 2012
Outros Autores: Alfenas-Zerbini, Poliane, Cascardo, Renan S., Andrade, Eduardo C., Zerbini, F. Murilo
Tipo de documento: Artigo
Idioma: eng
Título da fonte: LOCUS Repositório Institucional da UFV
Texto Completo: https://doi.org/10.1007/s00705-012-1384-x
http://www.locus.ufv.br/handle/123456789/19583
Resumo: Papaya lethal yellowing virus (PLYV) causes an economically important disease in papayas in northeastern Brazil. Based on biological and molecular properties, PLYV has been tentatively assigned to the genus Sobemovirus. We report the sequence of the full-length genome of a PLYV isolate from Brazil, determined by deep sequencing. The PLYV genome is 4,145 nt long and contains four ORFs, with an arrangement identical to that of sobemoviruses. The polyprotein and CP display significant sequence identity with the corresponding proteins of other sobemoviruses. Pairwise comparisons and phylogenetic analysis based on complete nucleotide sequences confirm the classification of PLYV in the genus Sobemovirus.
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spelling Analysis of the full-length genome sequence of papaya lethal yellowing virus (PLYV), determined by deep sequencing, confirms its classification in the genus SobemovirusCoat proteinMottle virusPapaya ringspot virusMonophyletic branchSouthern bean mosaic virusPapaya lethal yellowing virus (PLYV) causes an economically important disease in papayas in northeastern Brazil. Based on biological and molecular properties, PLYV has been tentatively assigned to the genus Sobemovirus. We report the sequence of the full-length genome of a PLYV isolate from Brazil, determined by deep sequencing. The PLYV genome is 4,145 nt long and contains four ORFs, with an arrangement identical to that of sobemoviruses. The polyprotein and CP display significant sequence identity with the corresponding proteins of other sobemoviruses. Pairwise comparisons and phylogenetic analysis based on complete nucleotide sequences confirm the classification of PLYV in the genus Sobemovirus.Archives of Virology2018-05-16T10:45:13Z2018-05-16T10:45:13Z2012-06-29info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlepdfapplication/pdf14328798https://doi.org/10.1007/s00705-012-1384-xhttp://www.locus.ufv.br/handle/123456789/19583engv. 157, Issue 10, p. 2009–2011, October 2012Springer-Verlaginfo:eu-repo/semantics/openAccessPereira, Álvaro J.Alfenas-Zerbini, PolianeCascardo, Renan S.Andrade, Eduardo C.Zerbini, F. Muriloreponame:LOCUS Repositório Institucional da UFVinstname:Universidade Federal de Viçosa (UFV)instacron:UFV2024-07-12T06:35:50Zoai:locus.ufv.br:123456789/19583Repositório InstitucionalPUBhttps://www.locus.ufv.br/oai/requestfabiojreis@ufv.bropendoar:21452024-07-12T06:35:50LOCUS Repositório Institucional da UFV - Universidade Federal de Viçosa (UFV)false
dc.title.none.fl_str_mv Analysis of the full-length genome sequence of papaya lethal yellowing virus (PLYV), determined by deep sequencing, confirms its classification in the genus Sobemovirus
title Analysis of the full-length genome sequence of papaya lethal yellowing virus (PLYV), determined by deep sequencing, confirms its classification in the genus Sobemovirus
spellingShingle Analysis of the full-length genome sequence of papaya lethal yellowing virus (PLYV), determined by deep sequencing, confirms its classification in the genus Sobemovirus
Pereira, Álvaro J.
Coat protein
Mottle virus
Papaya ringspot virus
Monophyletic branch
Southern bean mosaic virus
title_short Analysis of the full-length genome sequence of papaya lethal yellowing virus (PLYV), determined by deep sequencing, confirms its classification in the genus Sobemovirus
title_full Analysis of the full-length genome sequence of papaya lethal yellowing virus (PLYV), determined by deep sequencing, confirms its classification in the genus Sobemovirus
title_fullStr Analysis of the full-length genome sequence of papaya lethal yellowing virus (PLYV), determined by deep sequencing, confirms its classification in the genus Sobemovirus
title_full_unstemmed Analysis of the full-length genome sequence of papaya lethal yellowing virus (PLYV), determined by deep sequencing, confirms its classification in the genus Sobemovirus
title_sort Analysis of the full-length genome sequence of papaya lethal yellowing virus (PLYV), determined by deep sequencing, confirms its classification in the genus Sobemovirus
author Pereira, Álvaro J.
author_facet Pereira, Álvaro J.
Alfenas-Zerbini, Poliane
Cascardo, Renan S.
Andrade, Eduardo C.
Zerbini, F. Murilo
author_role author
author2 Alfenas-Zerbini, Poliane
Cascardo, Renan S.
Andrade, Eduardo C.
Zerbini, F. Murilo
author2_role author
author
author
author
dc.contributor.author.fl_str_mv Pereira, Álvaro J.
Alfenas-Zerbini, Poliane
Cascardo, Renan S.
Andrade, Eduardo C.
Zerbini, F. Murilo
dc.subject.por.fl_str_mv Coat protein
Mottle virus
Papaya ringspot virus
Monophyletic branch
Southern bean mosaic virus
topic Coat protein
Mottle virus
Papaya ringspot virus
Monophyletic branch
Southern bean mosaic virus
description Papaya lethal yellowing virus (PLYV) causes an economically important disease in papayas in northeastern Brazil. Based on biological and molecular properties, PLYV has been tentatively assigned to the genus Sobemovirus. We report the sequence of the full-length genome of a PLYV isolate from Brazil, determined by deep sequencing. The PLYV genome is 4,145 nt long and contains four ORFs, with an arrangement identical to that of sobemoviruses. The polyprotein and CP display significant sequence identity with the corresponding proteins of other sobemoviruses. Pairwise comparisons and phylogenetic analysis based on complete nucleotide sequences confirm the classification of PLYV in the genus Sobemovirus.
publishDate 2012
dc.date.none.fl_str_mv 2012-06-29
2018-05-16T10:45:13Z
2018-05-16T10:45:13Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv 14328798
https://doi.org/10.1007/s00705-012-1384-x
http://www.locus.ufv.br/handle/123456789/19583
identifier_str_mv 14328798
url https://doi.org/10.1007/s00705-012-1384-x
http://www.locus.ufv.br/handle/123456789/19583
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv v. 157, Issue 10, p. 2009–2011, October 2012
dc.rights.driver.fl_str_mv Springer-Verlag
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Springer-Verlag
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv pdf
application/pdf
dc.publisher.none.fl_str_mv Archives of Virology
publisher.none.fl_str_mv Archives of Virology
dc.source.none.fl_str_mv reponame:LOCUS Repositório Institucional da UFV
instname:Universidade Federal de Viçosa (UFV)
instacron:UFV
instname_str Universidade Federal de Viçosa (UFV)
instacron_str UFV
institution UFV
reponame_str LOCUS Repositório Institucional da UFV
collection LOCUS Repositório Institucional da UFV
repository.name.fl_str_mv LOCUS Repositório Institucional da UFV - Universidade Federal de Viçosa (UFV)
repository.mail.fl_str_mv fabiojreis@ufv.br
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