Distribution and interaction patterns of bacterial communities in an ornithogenic soil of Seymour Island, Antarctica
Autor(a) principal: | |
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Data de Publicação: | 2014 |
Outros Autores: | , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | LOCUS Repositório Institucional da UFV |
Texto Completo: | http://dx.doi.org/10.1007/s00248-014-0510-6 http://www.locus.ufv.br/handle/123456789/22638 |
Resumo: | Next-generation, culture-independent sequencing offers an excellent opportunity to examine network interactions among different microbial species. In this study, soil bacterial communities from a penguin rookery site at Seymour Island were analyzed for abundance, structure, diversity, and interaction networks to identify interaction patterns among the various taxa at three soil depths. The analysis revealed the presence of eight phyla distributed in different proportions among the surface layer (0–8 cm), middle layer (20–25 cm), and bottom (35–40 cm). The bottom layer presented the highest values of bacterial richness, diversity, and evenness when compared to surface and middle layers. The network analysis revealed the existence of a unique pattern of interactions in which the soil microbial network formed a clustered topology, rather than a modular structure as is usually found in biological communities. In addition, specific taxa were identified as important players in microbial community structure. Furthermore, simulation analyses indicated that the loss of potential keystone groups of microorganisms might alter the patterns of interactions within the microbial community. These findings provide new insights for assessing the consequences of environmental disturbances at the whole-community level in Antarctica. |
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Schaefer, Carlos Ernesto G. R.Rampelotto, Pabulo HenriqueBarboza, Anthony Diego MullerPereira, Antônio BatistaTriplett, Eric W.Camargo, Flávio Anastácio de OliveiraRoesch, Luiz Fernando Wurdig2018-11-29T12:36:08Z2018-11-29T12:36:08Z2014-10-241432184Xhttp://dx.doi.org/10.1007/s00248-014-0510-6http://www.locus.ufv.br/handle/123456789/22638Next-generation, culture-independent sequencing offers an excellent opportunity to examine network interactions among different microbial species. In this study, soil bacterial communities from a penguin rookery site at Seymour Island were analyzed for abundance, structure, diversity, and interaction networks to identify interaction patterns among the various taxa at three soil depths. The analysis revealed the presence of eight phyla distributed in different proportions among the surface layer (0–8 cm), middle layer (20–25 cm), and bottom (35–40 cm). The bottom layer presented the highest values of bacterial richness, diversity, and evenness when compared to surface and middle layers. The network analysis revealed the existence of a unique pattern of interactions in which the soil microbial network formed a clustered topology, rather than a modular structure as is usually found in biological communities. In addition, specific taxa were identified as important players in microbial community structure. Furthermore, simulation analyses indicated that the loss of potential keystone groups of microorganisms might alter the patterns of interactions within the microbial community. These findings provide new insights for assessing the consequences of environmental disturbances at the whole-community level in Antarctica.engMicrobial EcologyVolume 69, Issue 3, Pages 684– 694, April 2015Springer Science+Business Media New York 2014info:eu-repo/semantics/openAccess16S rRNA geneCo-occurrenceIon PGM sequencingMicrobiomeNetwork analysisDistribution and interaction patterns of bacterial communities in an ornithogenic soil of Seymour Island, Antarcticainfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfreponame:LOCUS Repositório Institucional da UFVinstname:Universidade Federal de Viçosa (UFV)instacron:UFVORIGINALartigo.pdfartigo.pdftexto completoapplication/pdf898459https://locus.ufv.br//bitstream/123456789/22638/1/artigo.pdf5a0463fb3c29f3a85fbcbb7095cc9f25MD51LICENSElicense.txtlicense.txttext/plain; charset=utf-81748https://locus.ufv.br//bitstream/123456789/22638/2/license.txt8a4605be74aa9ea9d79846c1fba20a33MD52123456789/226382018-11-29 10:48:35.813oai:locus.ufv.br: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Repositório InstitucionalPUBhttps://www.locus.ufv.br/oai/requestfabiojreis@ufv.bropendoar:21452018-11-29T13:48:35LOCUS Repositório Institucional da UFV - Universidade Federal de Viçosa (UFV)false |
dc.title.en.fl_str_mv |
Distribution and interaction patterns of bacterial communities in an ornithogenic soil of Seymour Island, Antarctica |
title |
Distribution and interaction patterns of bacterial communities in an ornithogenic soil of Seymour Island, Antarctica |
spellingShingle |
Distribution and interaction patterns of bacterial communities in an ornithogenic soil of Seymour Island, Antarctica Schaefer, Carlos Ernesto G. R. 16S rRNA gene Co-occurrence Ion PGM sequencing Microbiome Network analysis |
title_short |
Distribution and interaction patterns of bacterial communities in an ornithogenic soil of Seymour Island, Antarctica |
title_full |
Distribution and interaction patterns of bacterial communities in an ornithogenic soil of Seymour Island, Antarctica |
title_fullStr |
Distribution and interaction patterns of bacterial communities in an ornithogenic soil of Seymour Island, Antarctica |
title_full_unstemmed |
Distribution and interaction patterns of bacterial communities in an ornithogenic soil of Seymour Island, Antarctica |
title_sort |
Distribution and interaction patterns of bacterial communities in an ornithogenic soil of Seymour Island, Antarctica |
author |
Schaefer, Carlos Ernesto G. R. |
author_facet |
Schaefer, Carlos Ernesto G. R. Rampelotto, Pabulo Henrique Barboza, Anthony Diego Muller Pereira, Antônio Batista Triplett, Eric W. Camargo, Flávio Anastácio de Oliveira Roesch, Luiz Fernando Wurdig |
author_role |
author |
author2 |
Rampelotto, Pabulo Henrique Barboza, Anthony Diego Muller Pereira, Antônio Batista Triplett, Eric W. Camargo, Flávio Anastácio de Oliveira Roesch, Luiz Fernando Wurdig |
author2_role |
author author author author author author |
dc.contributor.author.fl_str_mv |
Schaefer, Carlos Ernesto G. R. Rampelotto, Pabulo Henrique Barboza, Anthony Diego Muller Pereira, Antônio Batista Triplett, Eric W. Camargo, Flávio Anastácio de Oliveira Roesch, Luiz Fernando Wurdig |
dc.subject.pt-BR.fl_str_mv |
16S rRNA gene Co-occurrence Ion PGM sequencing Microbiome Network analysis |
topic |
16S rRNA gene Co-occurrence Ion PGM sequencing Microbiome Network analysis |
description |
Next-generation, culture-independent sequencing offers an excellent opportunity to examine network interactions among different microbial species. In this study, soil bacterial communities from a penguin rookery site at Seymour Island were analyzed for abundance, structure, diversity, and interaction networks to identify interaction patterns among the various taxa at three soil depths. The analysis revealed the presence of eight phyla distributed in different proportions among the surface layer (0–8 cm), middle layer (20–25 cm), and bottom (35–40 cm). The bottom layer presented the highest values of bacterial richness, diversity, and evenness when compared to surface and middle layers. The network analysis revealed the existence of a unique pattern of interactions in which the soil microbial network formed a clustered topology, rather than a modular structure as is usually found in biological communities. In addition, specific taxa were identified as important players in microbial community structure. Furthermore, simulation analyses indicated that the loss of potential keystone groups of microorganisms might alter the patterns of interactions within the microbial community. These findings provide new insights for assessing the consequences of environmental disturbances at the whole-community level in Antarctica. |
publishDate |
2014 |
dc.date.issued.fl_str_mv |
2014-10-24 |
dc.date.accessioned.fl_str_mv |
2018-11-29T12:36:08Z |
dc.date.available.fl_str_mv |
2018-11-29T12:36:08Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1007/s00248-014-0510-6 http://www.locus.ufv.br/handle/123456789/22638 |
dc.identifier.issn.none.fl_str_mv |
1432184X |
identifier_str_mv |
1432184X |
url |
http://dx.doi.org/10.1007/s00248-014-0510-6 http://www.locus.ufv.br/handle/123456789/22638 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.ispartofseries.pt-BR.fl_str_mv |
Volume 69, Issue 3, Pages 684– 694, April 2015 |
dc.rights.driver.fl_str_mv |
Springer Science+Business Media New York 2014 info:eu-repo/semantics/openAccess |
rights_invalid_str_mv |
Springer Science+Business Media New York 2014 |
eu_rights_str_mv |
openAccess |
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dc.publisher.none.fl_str_mv |
Microbial Ecology |
publisher.none.fl_str_mv |
Microbial Ecology |
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LOCUS Repositório Institucional da UFV |
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