Distribution and interaction patterns of bacterial communities in an ornithogenic soil of Seymour Island, Antarctica

Detalhes bibliográficos
Autor(a) principal: Schaefer, Carlos Ernesto G. R.
Data de Publicação: 2014
Outros Autores: Rampelotto, Pabulo Henrique, Barboza, Anthony Diego Muller, Pereira, Antônio Batista, Triplett, Eric W., Camargo, Flávio Anastácio de Oliveira, Roesch, Luiz Fernando Wurdig
Tipo de documento: Artigo
Idioma: eng
Título da fonte: LOCUS Repositório Institucional da UFV
Texto Completo: http://dx.doi.org/10.1007/s00248-014-0510-6
http://www.locus.ufv.br/handle/123456789/22638
Resumo: Next-generation, culture-independent sequencing offers an excellent opportunity to examine network interactions among different microbial species. In this study, soil bacterial communities from a penguin rookery site at Seymour Island were analyzed for abundance, structure, diversity, and interaction networks to identify interaction patterns among the various taxa at three soil depths. The analysis revealed the presence of eight phyla distributed in different proportions among the surface layer (0–8 cm), middle layer (20–25 cm), and bottom (35–40 cm). The bottom layer presented the highest values of bacterial richness, diversity, and evenness when compared to surface and middle layers. The network analysis revealed the existence of a unique pattern of interactions in which the soil microbial network formed a clustered topology, rather than a modular structure as is usually found in biological communities. In addition, specific taxa were identified as important players in microbial community structure. Furthermore, simulation analyses indicated that the loss of potential keystone groups of microorganisms might alter the patterns of interactions within the microbial community. These findings provide new insights for assessing the consequences of environmental disturbances at the whole-community level in Antarctica.
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spelling Schaefer, Carlos Ernesto G. R.Rampelotto, Pabulo HenriqueBarboza, Anthony Diego MullerPereira, Antônio BatistaTriplett, Eric W.Camargo, Flávio Anastácio de OliveiraRoesch, Luiz Fernando Wurdig2018-11-29T12:36:08Z2018-11-29T12:36:08Z2014-10-241432184Xhttp://dx.doi.org/10.1007/s00248-014-0510-6http://www.locus.ufv.br/handle/123456789/22638Next-generation, culture-independent sequencing offers an excellent opportunity to examine network interactions among different microbial species. In this study, soil bacterial communities from a penguin rookery site at Seymour Island were analyzed for abundance, structure, diversity, and interaction networks to identify interaction patterns among the various taxa at three soil depths. The analysis revealed the presence of eight phyla distributed in different proportions among the surface layer (0–8 cm), middle layer (20–25 cm), and bottom (35–40 cm). The bottom layer presented the highest values of bacterial richness, diversity, and evenness when compared to surface and middle layers. The network analysis revealed the existence of a unique pattern of interactions in which the soil microbial network formed a clustered topology, rather than a modular structure as is usually found in biological communities. In addition, specific taxa were identified as important players in microbial community structure. Furthermore, simulation analyses indicated that the loss of potential keystone groups of microorganisms might alter the patterns of interactions within the microbial community. These findings provide new insights for assessing the consequences of environmental disturbances at the whole-community level in Antarctica.engMicrobial EcologyVolume 69, Issue 3, Pages 684– 694, April 2015Springer Science+Business Media New York 2014info:eu-repo/semantics/openAccess16S rRNA geneCo-occurrenceIon PGM sequencingMicrobiomeNetwork analysisDistribution and interaction patterns of bacterial communities in an ornithogenic soil of Seymour Island, Antarcticainfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfreponame:LOCUS Repositório Institucional da UFVinstname:Universidade Federal de Viçosa (UFV)instacron:UFVORIGINALartigo.pdfartigo.pdftexto completoapplication/pdf898459https://locus.ufv.br//bitstream/123456789/22638/1/artigo.pdf5a0463fb3c29f3a85fbcbb7095cc9f25MD51LICENSElicense.txtlicense.txttext/plain; charset=utf-81748https://locus.ufv.br//bitstream/123456789/22638/2/license.txt8a4605be74aa9ea9d79846c1fba20a33MD52123456789/226382018-11-29 10:48:35.813oai:locus.ufv.br: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Repositório InstitucionalPUBhttps://www.locus.ufv.br/oai/requestfabiojreis@ufv.bropendoar:21452018-11-29T13:48:35LOCUS Repositório Institucional da UFV - Universidade Federal de Viçosa (UFV)false
dc.title.en.fl_str_mv Distribution and interaction patterns of bacterial communities in an ornithogenic soil of Seymour Island, Antarctica
title Distribution and interaction patterns of bacterial communities in an ornithogenic soil of Seymour Island, Antarctica
spellingShingle Distribution and interaction patterns of bacterial communities in an ornithogenic soil of Seymour Island, Antarctica
Schaefer, Carlos Ernesto G. R.
16S rRNA gene
Co-occurrence
Ion PGM sequencing
Microbiome
Network analysis
title_short Distribution and interaction patterns of bacterial communities in an ornithogenic soil of Seymour Island, Antarctica
title_full Distribution and interaction patterns of bacterial communities in an ornithogenic soil of Seymour Island, Antarctica
title_fullStr Distribution and interaction patterns of bacterial communities in an ornithogenic soil of Seymour Island, Antarctica
title_full_unstemmed Distribution and interaction patterns of bacterial communities in an ornithogenic soil of Seymour Island, Antarctica
title_sort Distribution and interaction patterns of bacterial communities in an ornithogenic soil of Seymour Island, Antarctica
author Schaefer, Carlos Ernesto G. R.
author_facet Schaefer, Carlos Ernesto G. R.
Rampelotto, Pabulo Henrique
Barboza, Anthony Diego Muller
Pereira, Antônio Batista
Triplett, Eric W.
Camargo, Flávio Anastácio de Oliveira
Roesch, Luiz Fernando Wurdig
author_role author
author2 Rampelotto, Pabulo Henrique
Barboza, Anthony Diego Muller
Pereira, Antônio Batista
Triplett, Eric W.
Camargo, Flávio Anastácio de Oliveira
Roesch, Luiz Fernando Wurdig
author2_role author
author
author
author
author
author
dc.contributor.author.fl_str_mv Schaefer, Carlos Ernesto G. R.
Rampelotto, Pabulo Henrique
Barboza, Anthony Diego Muller
Pereira, Antônio Batista
Triplett, Eric W.
Camargo, Flávio Anastácio de Oliveira
Roesch, Luiz Fernando Wurdig
dc.subject.pt-BR.fl_str_mv 16S rRNA gene
Co-occurrence
Ion PGM sequencing
Microbiome
Network analysis
topic 16S rRNA gene
Co-occurrence
Ion PGM sequencing
Microbiome
Network analysis
description Next-generation, culture-independent sequencing offers an excellent opportunity to examine network interactions among different microbial species. In this study, soil bacterial communities from a penguin rookery site at Seymour Island were analyzed for abundance, structure, diversity, and interaction networks to identify interaction patterns among the various taxa at three soil depths. The analysis revealed the presence of eight phyla distributed in different proportions among the surface layer (0–8 cm), middle layer (20–25 cm), and bottom (35–40 cm). The bottom layer presented the highest values of bacterial richness, diversity, and evenness when compared to surface and middle layers. The network analysis revealed the existence of a unique pattern of interactions in which the soil microbial network formed a clustered topology, rather than a modular structure as is usually found in biological communities. In addition, specific taxa were identified as important players in microbial community structure. Furthermore, simulation analyses indicated that the loss of potential keystone groups of microorganisms might alter the patterns of interactions within the microbial community. These findings provide new insights for assessing the consequences of environmental disturbances at the whole-community level in Antarctica.
publishDate 2014
dc.date.issued.fl_str_mv 2014-10-24
dc.date.accessioned.fl_str_mv 2018-11-29T12:36:08Z
dc.date.available.fl_str_mv 2018-11-29T12:36:08Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
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status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1007/s00248-014-0510-6
http://www.locus.ufv.br/handle/123456789/22638
dc.identifier.issn.none.fl_str_mv 1432184X
identifier_str_mv 1432184X
url http://dx.doi.org/10.1007/s00248-014-0510-6
http://www.locus.ufv.br/handle/123456789/22638
dc.language.iso.fl_str_mv eng
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dc.relation.ispartofseries.pt-BR.fl_str_mv Volume 69, Issue 3, Pages 684– 694, April 2015
dc.rights.driver.fl_str_mv Springer Science+Business Media New York 2014
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Springer Science+Business Media New York 2014
eu_rights_str_mv openAccess
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dc.publisher.none.fl_str_mv Microbial Ecology
publisher.none.fl_str_mv Microbial Ecology
dc.source.none.fl_str_mv reponame:LOCUS Repositório Institucional da UFV
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