Early prediction of sugarcane genotypes susceptible and resistant to Diatraea saccharalis using spectroscopies and classification techniques
Autor(a) principal: | |
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Data de Publicação: | 2019 |
Outros Autores: | , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | LOCUS Repositório Institucional da UFV |
Texto Completo: | https://doi.org/10.1016/j.saa.2019.03.114 http://www.locus.ufv.br/handle/123456789/24431 |
Resumo: | The aim of this work was to use spectroscopic methods and partial least squares discriminant analysis (PLS-DA) for the early prediction of genotype resistance or susceptibility to sugarcane borer. The sugarcane leaf +1 was directly analyzed with no sample preparation by ultraviolet-visible-near-infrared (UV-VIS-NIR), middle-infrared (MID), and near-infrared (NIR) spectroscopies. Also, laser-induced breakdown spectroscopy (LIBS) was used to analyze pellets of dried and ground leaves and stalks of sugarcane. Classification models were built using PLS-DA. The models built using UV-VIS-NIR, MID or NIR spectra exhibited ideal sensitivity, specificity, and classification errors, i.e., 1 for both sensitivity and specificity and 0 for classification errors. Regarding the models built using LIBS spectra, those using spectra of pellets made from dried and ground leaves also presented ideal sensitivity, specificity, and classification errors; on the other hand, models built using the spectra of pellets made of dried and ground stalks did not present ideal values for these parameters. Thus, the models built, except for the one using LIBS of pellets made of stalks, showed excellent predictive capacity, making them suitable for predicting the resistance or susceptibility of sugarcane genotypes in the early stages of a plant's life. |
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Porto, Nathália de A.Roque, Jussara V.Wartha, Cleiton A.Cardoso, WilsonPeternelli, Luiz A.Barbosa, Márcio H. P.Teófilo, Reinaldo F.2019-04-10T13:55:59Z2019-04-10T13:55:59Z2019-07-051386-1425https://doi.org/10.1016/j.saa.2019.03.114http://www.locus.ufv.br/handle/123456789/24431The aim of this work was to use spectroscopic methods and partial least squares discriminant analysis (PLS-DA) for the early prediction of genotype resistance or susceptibility to sugarcane borer. The sugarcane leaf +1 was directly analyzed with no sample preparation by ultraviolet-visible-near-infrared (UV-VIS-NIR), middle-infrared (MID), and near-infrared (NIR) spectroscopies. Also, laser-induced breakdown spectroscopy (LIBS) was used to analyze pellets of dried and ground leaves and stalks of sugarcane. Classification models were built using PLS-DA. The models built using UV-VIS-NIR, MID or NIR spectra exhibited ideal sensitivity, specificity, and classification errors, i.e., 1 for both sensitivity and specificity and 0 for classification errors. Regarding the models built using LIBS spectra, those using spectra of pellets made from dried and ground leaves also presented ideal sensitivity, specificity, and classification errors; on the other hand, models built using the spectra of pellets made of dried and ground stalks did not present ideal values for these parameters. Thus, the models built, except for the one using LIBS of pellets made of stalks, showed excellent predictive capacity, making them suitable for predicting the resistance or susceptibility of sugarcane genotypes in the early stages of a plant's life.engSpectrochimica Acta Part A: Molecular and Biomolecular SpectroscopyVolume 218, Pages 69-75, July 2019Elsevier B. V.info:eu-repo/semantics/openAccessSugarcane borerSpectroscopiesGenetic breedingPLS-DAEarly prediction of sugarcane genotypes susceptible and resistant to Diatraea saccharalis using spectroscopies and classification techniquesinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfreponame:LOCUS Repositório Institucional da UFVinstname:Universidade Federal de Viçosa (UFV)instacron:UFVORIGINALartigo.pdfartigo.pdfTexto completoapplication/pdf1714341https://locus.ufv.br//bitstream/123456789/24431/1/artigo.pdfcad16c58865e5c39ea562c174ee4684fMD51LICENSElicense.txtlicense.txttext/plain; charset=utf-81748https://locus.ufv.br//bitstream/123456789/24431/2/license.txt8a4605be74aa9ea9d79846c1fba20a33MD52123456789/244312019-04-10 10:59:24.467oai:locus.ufv.br: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Repositório InstitucionalPUBhttps://www.locus.ufv.br/oai/requestfabiojreis@ufv.bropendoar:21452019-04-10T13:59:24LOCUS Repositório Institucional da UFV - Universidade Federal de Viçosa (UFV)false |
dc.title.en.fl_str_mv |
Early prediction of sugarcane genotypes susceptible and resistant to Diatraea saccharalis using spectroscopies and classification techniques |
title |
Early prediction of sugarcane genotypes susceptible and resistant to Diatraea saccharalis using spectroscopies and classification techniques |
spellingShingle |
Early prediction of sugarcane genotypes susceptible and resistant to Diatraea saccharalis using spectroscopies and classification techniques Porto, Nathália de A. Sugarcane borer Spectroscopies Genetic breeding PLS-DA |
title_short |
Early prediction of sugarcane genotypes susceptible and resistant to Diatraea saccharalis using spectroscopies and classification techniques |
title_full |
Early prediction of sugarcane genotypes susceptible and resistant to Diatraea saccharalis using spectroscopies and classification techniques |
title_fullStr |
Early prediction of sugarcane genotypes susceptible and resistant to Diatraea saccharalis using spectroscopies and classification techniques |
title_full_unstemmed |
Early prediction of sugarcane genotypes susceptible and resistant to Diatraea saccharalis using spectroscopies and classification techniques |
title_sort |
Early prediction of sugarcane genotypes susceptible and resistant to Diatraea saccharalis using spectroscopies and classification techniques |
author |
Porto, Nathália de A. |
author_facet |
Porto, Nathália de A. Roque, Jussara V. Wartha, Cleiton A. Cardoso, Wilson Peternelli, Luiz A. Barbosa, Márcio H. P. Teófilo, Reinaldo F. |
author_role |
author |
author2 |
Roque, Jussara V. Wartha, Cleiton A. Cardoso, Wilson Peternelli, Luiz A. Barbosa, Márcio H. P. Teófilo, Reinaldo F. |
author2_role |
author author author author author author |
dc.contributor.author.fl_str_mv |
Porto, Nathália de A. Roque, Jussara V. Wartha, Cleiton A. Cardoso, Wilson Peternelli, Luiz A. Barbosa, Márcio H. P. Teófilo, Reinaldo F. |
dc.subject.pt-BR.fl_str_mv |
Sugarcane borer Spectroscopies Genetic breeding PLS-DA |
topic |
Sugarcane borer Spectroscopies Genetic breeding PLS-DA |
description |
The aim of this work was to use spectroscopic methods and partial least squares discriminant analysis (PLS-DA) for the early prediction of genotype resistance or susceptibility to sugarcane borer. The sugarcane leaf +1 was directly analyzed with no sample preparation by ultraviolet-visible-near-infrared (UV-VIS-NIR), middle-infrared (MID), and near-infrared (NIR) spectroscopies. Also, laser-induced breakdown spectroscopy (LIBS) was used to analyze pellets of dried and ground leaves and stalks of sugarcane. Classification models were built using PLS-DA. The models built using UV-VIS-NIR, MID or NIR spectra exhibited ideal sensitivity, specificity, and classification errors, i.e., 1 for both sensitivity and specificity and 0 for classification errors. Regarding the models built using LIBS spectra, those using spectra of pellets made from dried and ground leaves also presented ideal sensitivity, specificity, and classification errors; on the other hand, models built using the spectra of pellets made of dried and ground stalks did not present ideal values for these parameters. Thus, the models built, except for the one using LIBS of pellets made of stalks, showed excellent predictive capacity, making them suitable for predicting the resistance or susceptibility of sugarcane genotypes in the early stages of a plant's life. |
publishDate |
2019 |
dc.date.accessioned.fl_str_mv |
2019-04-10T13:55:59Z |
dc.date.available.fl_str_mv |
2019-04-10T13:55:59Z |
dc.date.issued.fl_str_mv |
2019-07-05 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
https://doi.org/10.1016/j.saa.2019.03.114 http://www.locus.ufv.br/handle/123456789/24431 |
dc.identifier.issn.none.fl_str_mv |
1386-1425 |
identifier_str_mv |
1386-1425 |
url |
https://doi.org/10.1016/j.saa.2019.03.114 http://www.locus.ufv.br/handle/123456789/24431 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.ispartofseries.pt-BR.fl_str_mv |
Volume 218, Pages 69-75, July 2019 |
dc.rights.driver.fl_str_mv |
Elsevier B. V. info:eu-repo/semantics/openAccess |
rights_invalid_str_mv |
Elsevier B. V. |
eu_rights_str_mv |
openAccess |
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application/pdf |
dc.publisher.none.fl_str_mv |
Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy |
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Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy |
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reponame:LOCUS Repositório Institucional da UFV instname:Universidade Federal de Viçosa (UFV) instacron:UFV |
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LOCUS Repositório Institucional da UFV |
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LOCUS Repositório Institucional da UFV |
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