Supervised independent component analysis as an alternative method for genomic selection in pigs
| Autor(a) principal: | |
|---|---|
| Data de Publicação: | 2014 |
| Outros Autores: | , , , , , , , , |
| Tipo de documento: | Artigo |
| Idioma: | eng |
| Título da fonte: | LOCUS Repositório Institucional da UFV |
| Texto Completo: | http://dx.doi.org/10.1111/jbg.12104 http://www.locus.ufv.br/handle/123456789/16058 |
Resumo: | The objective of this work was to evaluate the efficiency of the supervised independent component regression (SICR) method for the estimation of genomic values and the SNP marker effects for boar taint and carcass traits in pigs. The methods were evaluated via the agreement between the predicted genetic values and the corrected phenotypes observed by cross-validation. These values were also compared with other methods generally used for the same purposes, such as RR-BLUP, SPCR, SPLS, ICR, PCR and PLS. The SICR method was found to have the most accurate prediction values. |
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Supervised independent component analysis as an alternative method for genomic selection in pigsAccuracySNPAnimal breedingGenomic selectionThe objective of this work was to evaluate the efficiency of the supervised independent component regression (SICR) method for the estimation of genomic values and the SNP marker effects for boar taint and carcass traits in pigs. The methods were evaluated via the agreement between the predicted genetic values and the corrected phenotypes observed by cross-validation. These values were also compared with other methods generally used for the same purposes, such as RR-BLUP, SPCR, SPLS, ICR, PCR and PLS. The SICR method was found to have the most accurate prediction values.Jornal of Breeding and Genetics2018-01-02T12:14:08Z2018-01-02T12:14:08Z2014-12info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlepdfapplication/pdf0931-2668http://dx.doi.org/10.1111/jbg.12104http://www.locus.ufv.br/handle/123456789/16058engv. 131, n. 6, p. 452–461, Dec. 2014Azevedo, C.F.Silva, F.F.Resende, M.D.V. deLopes, M.S.Duijvesteijn, N.Guimarães, S.E.F.Lopes, P.S.Kelly, M.J.Viana, J.M.S.Knol, E.F.info:eu-repo/semantics/openAccessreponame:LOCUS Repositório Institucional da UFVinstname:Universidade Federal de Viçosa (UFV)instacron:UFV2024-07-12T08:02:55Zoai:locus.ufv.br:123456789/16058Repositório InstitucionalPUBhttps://www.locus.ufv.br/oai/requestfabiojreis@ufv.bropendoar:21452024-07-12T08:02:55LOCUS Repositório Institucional da UFV - Universidade Federal de Viçosa (UFV)false |
| dc.title.none.fl_str_mv |
Supervised independent component analysis as an alternative method for genomic selection in pigs |
| title |
Supervised independent component analysis as an alternative method for genomic selection in pigs |
| spellingShingle |
Supervised independent component analysis as an alternative method for genomic selection in pigs Azevedo, C.F. Accuracy SNP Animal breeding Genomic selection |
| title_short |
Supervised independent component analysis as an alternative method for genomic selection in pigs |
| title_full |
Supervised independent component analysis as an alternative method for genomic selection in pigs |
| title_fullStr |
Supervised independent component analysis as an alternative method for genomic selection in pigs |
| title_full_unstemmed |
Supervised independent component analysis as an alternative method for genomic selection in pigs |
| title_sort |
Supervised independent component analysis as an alternative method for genomic selection in pigs |
| author |
Azevedo, C.F. |
| author_facet |
Azevedo, C.F. Silva, F.F. Resende, M.D.V. de Lopes, M.S. Duijvesteijn, N. Guimarães, S.E.F. Lopes, P.S. Kelly, M.J. Viana, J.M.S. Knol, E.F. |
| author_role |
author |
| author2 |
Silva, F.F. Resende, M.D.V. de Lopes, M.S. Duijvesteijn, N. Guimarães, S.E.F. Lopes, P.S. Kelly, M.J. Viana, J.M.S. Knol, E.F. |
| author2_role |
author author author author author author author author author |
| dc.contributor.author.fl_str_mv |
Azevedo, C.F. Silva, F.F. Resende, M.D.V. de Lopes, M.S. Duijvesteijn, N. Guimarães, S.E.F. Lopes, P.S. Kelly, M.J. Viana, J.M.S. Knol, E.F. |
| dc.subject.por.fl_str_mv |
Accuracy SNP Animal breeding Genomic selection |
| topic |
Accuracy SNP Animal breeding Genomic selection |
| description |
The objective of this work was to evaluate the efficiency of the supervised independent component regression (SICR) method for the estimation of genomic values and the SNP marker effects for boar taint and carcass traits in pigs. The methods were evaluated via the agreement between the predicted genetic values and the corrected phenotypes observed by cross-validation. These values were also compared with other methods generally used for the same purposes, such as RR-BLUP, SPCR, SPLS, ICR, PCR and PLS. The SICR method was found to have the most accurate prediction values. |
| publishDate |
2014 |
| dc.date.none.fl_str_mv |
2014-12 2018-01-02T12:14:08Z 2018-01-02T12:14:08Z |
| dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
| dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
| format |
article |
| status_str |
publishedVersion |
| dc.identifier.uri.fl_str_mv |
0931-2668 http://dx.doi.org/10.1111/jbg.12104 http://www.locus.ufv.br/handle/123456789/16058 |
| identifier_str_mv |
0931-2668 |
| url |
http://dx.doi.org/10.1111/jbg.12104 http://www.locus.ufv.br/handle/123456789/16058 |
| dc.language.iso.fl_str_mv |
eng |
| language |
eng |
| dc.relation.none.fl_str_mv |
v. 131, n. 6, p. 452–461, Dec. 2014 |
| dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
| eu_rights_str_mv |
openAccess |
| dc.format.none.fl_str_mv |
pdf application/pdf |
| dc.publisher.none.fl_str_mv |
Jornal of Breeding and Genetics |
| publisher.none.fl_str_mv |
Jornal of Breeding and Genetics |
| dc.source.none.fl_str_mv |
reponame:LOCUS Repositório Institucional da UFV instname:Universidade Federal de Viçosa (UFV) instacron:UFV |
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Universidade Federal de Viçosa (UFV) |
| instacron_str |
UFV |
| institution |
UFV |
| reponame_str |
LOCUS Repositório Institucional da UFV |
| collection |
LOCUS Repositório Institucional da UFV |
| repository.name.fl_str_mv |
LOCUS Repositório Institucional da UFV - Universidade Federal de Viçosa (UFV) |
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fabiojreis@ufv.br |
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1817559982468497408 |