Development of a species-specific detection method for three Brazilian tomato begomoviruses
Autor(a) principal: | |
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Data de Publicação: | 2010 |
Outros Autores: | , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UnB |
Texto Completo: | http://repositorio.unb.br/handle/10482/27914 https://dx.doi.org/10.1590/S1982-56762010000100007 |
Resumo: | The begomoviruses (fam. Geminiviridae) have an ssDNA genome, are transmitted by whiteflies, and cause significant losses in tomato fields in Brazil. Nowadays, begomovirus species identification is carried out through the analysis of their complete genome sequence. Due to the high costs and difficulty in applying this technique to large-scale analysis, we aimed to develop a species-specific detection method based on PCR. Three species were targeted for amplification: Tomato severe rugose virus (ToSRV), Tomato rugose mosaic virus (ToRMV) and Tomato yellow vein streak virus (ToYVSV). Thirteen primer combinations were designed, and four were finally selected and tested against a group of 82 samples, including cloned DNA and viral DNA from infected plants previously identified by direct sequencing of PCR products. Three primer combinations were selected that could distinguish the three species, and confirmed by sequencing of amplified products. These combinations were validated by evaluation of field-collected tomato samples infected by begomovirus and this demonstrated that PCR can be a useful tool to distinguish the viruses and detect mixed infections caused by three begomovirus species. |
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Development of a species-specific detection method for three Brazilian tomato begomovirusesDesenvolvimento de método de detecção específico à espécie para três begomovirus no BrasilSolanum lycopersicumDetecção por PCRGeminivírusToSRVToYVSVThe begomoviruses (fam. Geminiviridae) have an ssDNA genome, are transmitted by whiteflies, and cause significant losses in tomato fields in Brazil. Nowadays, begomovirus species identification is carried out through the analysis of their complete genome sequence. Due to the high costs and difficulty in applying this technique to large-scale analysis, we aimed to develop a species-specific detection method based on PCR. Three species were targeted for amplification: Tomato severe rugose virus (ToSRV), Tomato rugose mosaic virus (ToRMV) and Tomato yellow vein streak virus (ToYVSV). Thirteen primer combinations were designed, and four were finally selected and tested against a group of 82 samples, including cloned DNA and viral DNA from infected plants previously identified by direct sequencing of PCR products. Three primer combinations were selected that could distinguish the three species, and confirmed by sequencing of amplified products. These combinations were validated by evaluation of field-collected tomato samples infected by begomovirus and this demonstrated that PCR can be a useful tool to distinguish the viruses and detect mixed infections caused by three begomovirus species.Os begomovírus (fam. Geminiviridae) possuem um genoma de ssDNA, são transmitidos por mosca-branca, e causam danos importantes em campos de produção de tomate no Brasil. Atualmente, a identificação de espécies de begomovírus é realizada pela análise da seqüência completa do genoma. Devido ao alto custo e dificuldade em se aplicar essa técnica para análises em larga escala, o objetivo desse trabalho foi desenvolver um método de detecção espécie-específico baseado em PCR. Três espécies foram avaliadas para amplificação: Tomato severe rugose virus (ToSRV), Tomato rugose mosaic virus (ToRMV) e Tomato yellow vein streak virus (ToYVSV). Foram testadas treze combinações de primers, e quatro foram selecionadas e avaliadas em um grupo de 82 amostras, incluindo DNA clonado e DNA viral total extraído de plantas infectadas com begomovírus previamente identificados por seqüenciamento direto de produto de PCR. Três combinações de primers capazes de distinguir as três espécies foram selecionadas, e confirmadas por seqüenciamento dos produtos amplificados. Estas combinações foram validadas com amostras de tomate infectadas por begomovírus em campo, demonstrando que a PCR pode ser uma ferramenta útil para separar as espécies virais e detectar infecções mistas causadas pelas três espécies de begomovírus.Em processamentoSociedade Brasileira de Fitopatologia2017-12-07T04:55:25Z2017-12-07T04:55:25Z2010info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfTrop. plant pathol.,v.35,n.1,p.043-047,2010http://repositorio.unb.br/handle/10482/27914https://dx.doi.org/10.1590/S1982-56762010000100007Fernandes, Fernanda RauschAlbuquerque, Leonardo Cunha deNagata, Alice Kazuko Inoueinfo:eu-repo/semantics/openAccessengreponame:Repositório Institucional da UnBinstname:Universidade de Brasília (UnB)instacron:UNB2024-08-28T16:17:04Zoai:repositorio.unb.br:10482/27914Repositório InstitucionalPUBhttps://repositorio.unb.br/oai/requestrepositorio@unb.bropendoar:2024-08-28T16:17:04Repositório Institucional da UnB - Universidade de Brasília (UnB)false |
dc.title.none.fl_str_mv |
Development of a species-specific detection method for three Brazilian tomato begomoviruses Desenvolvimento de método de detecção específico à espécie para três begomovirus no Brasil |
title |
Development of a species-specific detection method for three Brazilian tomato begomoviruses |
spellingShingle |
Development of a species-specific detection method for three Brazilian tomato begomoviruses Fernandes, Fernanda Rausch Solanum lycopersicum Detecção por PCR Geminivírus ToSRV ToYVSV |
title_short |
Development of a species-specific detection method for three Brazilian tomato begomoviruses |
title_full |
Development of a species-specific detection method for three Brazilian tomato begomoviruses |
title_fullStr |
Development of a species-specific detection method for three Brazilian tomato begomoviruses |
title_full_unstemmed |
Development of a species-specific detection method for three Brazilian tomato begomoviruses |
title_sort |
Development of a species-specific detection method for three Brazilian tomato begomoviruses |
author |
Fernandes, Fernanda Rausch |
author_facet |
Fernandes, Fernanda Rausch Albuquerque, Leonardo Cunha de Nagata, Alice Kazuko Inoue |
author_role |
author |
author2 |
Albuquerque, Leonardo Cunha de Nagata, Alice Kazuko Inoue |
author2_role |
author author |
dc.contributor.author.fl_str_mv |
Fernandes, Fernanda Rausch Albuquerque, Leonardo Cunha de Nagata, Alice Kazuko Inoue |
dc.subject.por.fl_str_mv |
Solanum lycopersicum Detecção por PCR Geminivírus ToSRV ToYVSV |
topic |
Solanum lycopersicum Detecção por PCR Geminivírus ToSRV ToYVSV |
description |
The begomoviruses (fam. Geminiviridae) have an ssDNA genome, are transmitted by whiteflies, and cause significant losses in tomato fields in Brazil. Nowadays, begomovirus species identification is carried out through the analysis of their complete genome sequence. Due to the high costs and difficulty in applying this technique to large-scale analysis, we aimed to develop a species-specific detection method based on PCR. Three species were targeted for amplification: Tomato severe rugose virus (ToSRV), Tomato rugose mosaic virus (ToRMV) and Tomato yellow vein streak virus (ToYVSV). Thirteen primer combinations were designed, and four were finally selected and tested against a group of 82 samples, including cloned DNA and viral DNA from infected plants previously identified by direct sequencing of PCR products. Three primer combinations were selected that could distinguish the three species, and confirmed by sequencing of amplified products. These combinations were validated by evaluation of field-collected tomato samples infected by begomovirus and this demonstrated that PCR can be a useful tool to distinguish the viruses and detect mixed infections caused by three begomovirus species. |
publishDate |
2010 |
dc.date.none.fl_str_mv |
2010 2017-12-07T04:55:25Z 2017-12-07T04:55:25Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
Trop. plant pathol.,v.35,n.1,p.043-047,2010 http://repositorio.unb.br/handle/10482/27914 https://dx.doi.org/10.1590/S1982-56762010000100007 |
identifier_str_mv |
Trop. plant pathol.,v.35,n.1,p.043-047,2010 |
url |
http://repositorio.unb.br/handle/10482/27914 https://dx.doi.org/10.1590/S1982-56762010000100007 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
Sociedade Brasileira de Fitopatologia |
publisher.none.fl_str_mv |
Sociedade Brasileira de Fitopatologia |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional da UnB instname:Universidade de Brasília (UnB) instacron:UNB |
instname_str |
Universidade de Brasília (UnB) |
instacron_str |
UNB |
institution |
UNB |
reponame_str |
Repositório Institucional da UnB |
collection |
Repositório Institucional da UnB |
repository.name.fl_str_mv |
Repositório Institucional da UnB - Universidade de Brasília (UnB) |
repository.mail.fl_str_mv |
repositorio@unb.br |
_version_ |
1814508165019992064 |