Detection of Badnavirus in pineapple in northeastern Brazil

Detalhes bibliográficos
Autor(a) principal: Santos, Edlene Maria da Silva Moraes
Data de Publicação: 2020
Outros Autores: Figueredo de Oliveira Costa, Jaqueline, Machado de Medeiros Ferro, Mayra, Silva, Sarah Jacqueline Cavalcanti da, Assunção, Iraildes Pereira, Lima, Gaus Silvestre de Andrade
Tipo de documento: Artigo
Idioma: por
Título da fonte: Diversitas Journal
Texto Completo: https://diversitasjournal.com.br/diversitas_journal/article/view/1284
Resumo: ABSTRACT: Brazil is one of the main global producers of pineapple (Ananas comosus L. Merril), with emphasis in the Northeastern region of the country. Pineapple is exposed to several phytosanitary problems, including viruses. Pineapple badnaviruses are caused by two distinct species: Pineapple bacilliform CO virus (PBCoV) and Pineapple bacilliform ER virus (PBErV). The present study aimed to detect possible species of the genus Badnavirus in pineapple samples in Northeastern Brazil, via PCR and sequencing of the RT/RNaseH region. Leaf samples of pineapples were collected in the states of Alagoas, Maranhão, Paraiba and Pernambuco, and subsequently subjected to total DNA extraction and amplification via PCR. Badnavirus positive samples were selected for sequencing. Analysis of pairwise comparisons revealed that all sequences obtained in this work showed an identity greater than 80% with the sequence of the species PBCoV (EU377664), from Australia, fully corroborating with phylogenetic analyzes. These results suggest the widespread of PBCoV in Northeastern Brazil and record the first report of Badnavirus in pineapple culture in Brazil. KEYWORDS: Caulimoviridae, Ananas comosus, molecular analysis.
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spelling Detection of Badnavirus in pineapple in northeastern BrazilABSTRACT: Brazil is one of the main global producers of pineapple (Ananas comosus L. Merril), with emphasis in the Northeastern region of the country. Pineapple is exposed to several phytosanitary problems, including viruses. Pineapple badnaviruses are caused by two distinct species: Pineapple bacilliform CO virus (PBCoV) and Pineapple bacilliform ER virus (PBErV). The present study aimed to detect possible species of the genus Badnavirus in pineapple samples in Northeastern Brazil, via PCR and sequencing of the RT/RNaseH region. Leaf samples of pineapples were collected in the states of Alagoas, Maranhão, Paraiba and Pernambuco, and subsequently subjected to total DNA extraction and amplification via PCR. Badnavirus positive samples were selected for sequencing. Analysis of pairwise comparisons revealed that all sequences obtained in this work showed an identity greater than 80% with the sequence of the species PBCoV (EU377664), from Australia, fully corroborating with phylogenetic analyzes. These results suggest the widespread of PBCoV in Northeastern Brazil and record the first report of Badnavirus in pineapple culture in Brazil. KEYWORDS: Caulimoviridae, Ananas comosus, molecular analysis.RESUMO: O Brasil é um dos principais produtores mundiais de abacaxi (Ananas comosus L. Merril), sendo a região Nordeste destaque em âmbito nacional. O abacaxizeiro está exposto a diversos problemas fitossanitários, inclusive as viroses. As badnaviroses do abacaxizeiro são causadas por duas espécies distintas: Pineapple bacilliform CO virus (PBCoV) e Pineapple bacilliform ER virus (PBErV). O presente estudo teve como objetivo detectar possíveis espécies do gênero Badnavirus em amostras de abacaxizeiro no Nordeste do Brasil, via PCR e sequenciamento da região RT/RNaseH. Amostras foliares de abacaxizeiros foram coletadas nos estados de Alagoas, Maranhão, Paraíba e Pernambuco e, posteriormente, submetidas à extração de DNA total e amplificação via PCR. Amostras positivas para Badnavirus foram selecionadas para sequenciamento. Análises de comparações de sequências pareadas revelaram que todas as sequências obtidas neste trabalho apresentaram identidade superior a 80% com a sequência da espécie PBCoV (EU377664), proveniente da Austrália, corroborando integralmente com as análises filogenéticas. Estes resultados sugerem a ampla disseminação do PBCoV no Nordeste brasileiro e registra o primeiro relato de Badnavirus na cultura do abacaxizeiro no Brasil. KEYWORDS: Caulimoviridae, Ananas comosus, análise molecular.Universidade Estadual de Alagoas - Eduneal2020-10-26info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://diversitasjournal.com.br/diversitas_journal/article/view/128410.17648/diversitas-journal-v5i4-1284Diversitas Journal; v. 5 n. 4 (2020): Agricultura familiar: a base da economia latinoamericana; 2450-24632525-521510.17648/diversitas-journal-v5i4reponame:Diversitas Journalinstname:Universidade Estadual de Alagoas (UNEAL)instacron:UNEALporhttps://diversitasjournal.com.br/diversitas_journal/article/view/1284/1098Copyright (c) 2020 Edlene Maria da Silva Moraes Santos, Jaqueline Figueredo de Oliveira Costa, Mayra Machado de Medeiros Ferro, Sarah Jacqueline Cavalcanti da Silva, Iraildes Pereira Assunção, Gaus Silvestre de Andrade Limahttps://creativecommons.org/licenses/by/4.0info:eu-repo/semantics/openAccessSantos, Edlene Maria da Silva MoraesFigueredo de Oliveira Costa, JaquelineMachado de Medeiros Ferro, MayraSilva, Sarah Jacqueline Cavalcanti daAssunção, Iraildes PereiraLima, Gaus Silvestre de Andrade2021-08-19T18:09:38Zoai:ojs.emnuvens.com.br:article/1284Revistahttps://diversitasjournal.com.br/diversitas_journal/indexPUBhttps://www.e-publicacoes.uerj.br/index.php/muralinternacional/oairevistadiversitasjournal@gmail.com2525-52152525-5215opendoar:2023-01-13T09:47:11.336994Diversitas Journal - Universidade Estadual de Alagoas (UNEAL)false
dc.title.none.fl_str_mv Detection of Badnavirus in pineapple in northeastern Brazil
title Detection of Badnavirus in pineapple in northeastern Brazil
spellingShingle Detection of Badnavirus in pineapple in northeastern Brazil
Santos, Edlene Maria da Silva Moraes
title_short Detection of Badnavirus in pineapple in northeastern Brazil
title_full Detection of Badnavirus in pineapple in northeastern Brazil
title_fullStr Detection of Badnavirus in pineapple in northeastern Brazil
title_full_unstemmed Detection of Badnavirus in pineapple in northeastern Brazil
title_sort Detection of Badnavirus in pineapple in northeastern Brazil
author Santos, Edlene Maria da Silva Moraes
author_facet Santos, Edlene Maria da Silva Moraes
Figueredo de Oliveira Costa, Jaqueline
Machado de Medeiros Ferro, Mayra
Silva, Sarah Jacqueline Cavalcanti da
Assunção, Iraildes Pereira
Lima, Gaus Silvestre de Andrade
author_role author
author2 Figueredo de Oliveira Costa, Jaqueline
Machado de Medeiros Ferro, Mayra
Silva, Sarah Jacqueline Cavalcanti da
Assunção, Iraildes Pereira
Lima, Gaus Silvestre de Andrade
author2_role author
author
author
author
author
dc.contributor.author.fl_str_mv Santos, Edlene Maria da Silva Moraes
Figueredo de Oliveira Costa, Jaqueline
Machado de Medeiros Ferro, Mayra
Silva, Sarah Jacqueline Cavalcanti da
Assunção, Iraildes Pereira
Lima, Gaus Silvestre de Andrade
description ABSTRACT: Brazil is one of the main global producers of pineapple (Ananas comosus L. Merril), with emphasis in the Northeastern region of the country. Pineapple is exposed to several phytosanitary problems, including viruses. Pineapple badnaviruses are caused by two distinct species: Pineapple bacilliform CO virus (PBCoV) and Pineapple bacilliform ER virus (PBErV). The present study aimed to detect possible species of the genus Badnavirus in pineapple samples in Northeastern Brazil, via PCR and sequencing of the RT/RNaseH region. Leaf samples of pineapples were collected in the states of Alagoas, Maranhão, Paraiba and Pernambuco, and subsequently subjected to total DNA extraction and amplification via PCR. Badnavirus positive samples were selected for sequencing. Analysis of pairwise comparisons revealed that all sequences obtained in this work showed an identity greater than 80% with the sequence of the species PBCoV (EU377664), from Australia, fully corroborating with phylogenetic analyzes. These results suggest the widespread of PBCoV in Northeastern Brazil and record the first report of Badnavirus in pineapple culture in Brazil. KEYWORDS: Caulimoviridae, Ananas comosus, molecular analysis.
publishDate 2020
dc.date.none.fl_str_mv 2020-10-26
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
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dc.identifier.uri.fl_str_mv https://diversitasjournal.com.br/diversitas_journal/article/view/1284
10.17648/diversitas-journal-v5i4-1284
url https://diversitasjournal.com.br/diversitas_journal/article/view/1284
identifier_str_mv 10.17648/diversitas-journal-v5i4-1284
dc.language.iso.fl_str_mv por
language por
dc.relation.none.fl_str_mv https://diversitasjournal.com.br/diversitas_journal/article/view/1284/1098
dc.rights.driver.fl_str_mv https://creativecommons.org/licenses/by/4.0
info:eu-repo/semantics/openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by/4.0
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidade Estadual de Alagoas - Eduneal
publisher.none.fl_str_mv Universidade Estadual de Alagoas - Eduneal
dc.source.none.fl_str_mv Diversitas Journal; v. 5 n. 4 (2020): Agricultura familiar: a base da economia latinoamericana; 2450-2463
2525-5215
10.17648/diversitas-journal-v5i4
reponame:Diversitas Journal
instname:Universidade Estadual de Alagoas (UNEAL)
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instname_str Universidade Estadual de Alagoas (UNEAL)
instacron_str UNEAL
institution UNEAL
reponame_str Diversitas Journal
collection Diversitas Journal
repository.name.fl_str_mv Diversitas Journal - Universidade Estadual de Alagoas (UNEAL)
repository.mail.fl_str_mv revistadiversitasjournal@gmail.com
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