Virtual screening and molecular docking of structures with potential inhibitor of the ebolavirus glycoprotein

Detalhes bibliográficos
Autor(a) principal: Ferreira, Maria de Lourdes de Aguiar Silva
Data de Publicação: 2022
Outros Autores: Bastos, Ruan Sousa, Lima, Lúcio Rocha de, Barbosa, Edielson dos Santos, Passos, Ionara Nayana Gomes, Santos, Cleydson Breno Rodrigues dos, Souza, Janilson Lima, Rego, Ulisses Alves do
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Research, Society and Development
Texto Completo: https://rsdjournal.org/index.php/rsd/article/view/26034
Resumo: Ebola is a disease caused by viruses of the ebolavirus genus that cause hemorrhagic fever with high human mortality. Symptoms of the infection include fever, headache, joint pain, diarrhea, vomiting and stomach pain. Unfortunately, there is still no effective treatment for this disease. This work aimed to perform a virtual screening of candidates with EBOV GP inhibition potential based on pharmacophores of 4 structures from the literature. The selected candidates underwent ADME analysis and later calculations of HOMO, LUMO and electrostatic potential map. 50 structures were obtained and after selection based on their ADME characteristics only 4 candidates were chosen. In the molecular anchoring process, the structure that presented the best binding energy was ZINC12 with -4.44 kcal.mol-1 and enzyme inhibition constant Ki equal to 555.9 µM. This result is fundamental, as it will subsidize other researches such as in vitro studies, or even application in real samples.
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spelling Virtual screening and molecular docking of structures with potential inhibitor of the ebolavirus glycoproteinProyección virtual y acoplamiento molecular de estructuras con potencial inhibitorio de la glicoproteína del ébolavirusTriagem virtual e ancoragem molecular de estruturas com potencial inibidor da glicoproteína do ebolavírusEBOV GPTriagem VirtualAncoragem molecular.EBOV GPProyección virtualAcoplamiento molecular.EBOV GPVirtual ScreeningDocking molecular.Ebola is a disease caused by viruses of the ebolavirus genus that cause hemorrhagic fever with high human mortality. Symptoms of the infection include fever, headache, joint pain, diarrhea, vomiting and stomach pain. Unfortunately, there is still no effective treatment for this disease. This work aimed to perform a virtual screening of candidates with EBOV GP inhibition potential based on pharmacophores of 4 structures from the literature. The selected candidates underwent ADME analysis and later calculations of HOMO, LUMO and electrostatic potential map. 50 structures were obtained and after selection based on their ADME characteristics only 4 candidates were chosen. In the molecular anchoring process, the structure that presented the best binding energy was ZINC12 with -4.44 kcal.mol-1 and enzyme inhibition constant Ki equal to 555.9 µM. This result is fundamental, as it will subsidize other researches such as in vitro studies, or even application in real samples.El Ébola es una enfermedad causada por virus del género ébolavirus que causan fiebre hemorrágica con alta mortalidad humana. Los síntomas de la infección incluyen fiebre, dolor de cabeza, dolor en las articulaciones, diarrea, vómitos y dolor de estómago. Desafortunadamente, todavía no existe un tratamiento efectivo para esta enfermedad. Este trabajo tuvo como objetivo realizar un proyección virtual de candidatos con potencial para inhibir EBOV GP basado en farmacóforos de 4 estructuras de la literatura. Los candidatos seleccionados se sometieron a análisis ADME y posteriores cálculos de HOMO, LUMO y mapa de potencial electrostático. Se obtuvieron 50 estructuras y tras la selección en base a sus características ADME solo se eligieron 4 candidatas. En el proceso de acoplamiento molecular, la estructura que presentó mejor energía de unión fue ZINC12 con -18.59 kJ.mol-1 y constante de inhibición enzimática Ki igual a 555.9 µM. Este resultado es fundamental, ya que subsidiará otras investigaciones como estudios in vitro, o incluso su aplicación en muestras reales.O ebola é uma doença causada por vírus do gênero ebolavírus que ocasionam febre hemorrágica com alta mortalidade humana. Os sintomas da infecção compreendem febre, dor de cabeça, dores nas articulações, diarreia, vômito e dor de estômago. Infelizmente, ainda não existe tratamento eficaz para esta doença. Este trabalho teve como objetivo realizar a triagem virtual de candidatos com potencial de inibição da EBOV GP baseada em farmacóforos de 4 estruturas da literatura. Os candidatos selecionados passaram por analise ADME e posteriormente cálculos de HOMO, LUMO e mapa de potencial eletrostático. 50 estruturas foram obtidas e após seleção com bases nas suas características ADME somente 4 candidatos foram escolhidos. No processo de ancoragem molecular a estrutura que apresentou a melhor energia de ligação foi a ZINC12 com -18.59 kJ.mol-1 e constante de inibição enzimática Ki igual a 555.9 µM. Este resultado é fundamental, pois subsidiará outras pesquisas tais como estudos de in vitro, ou mesmo aplicação em amostras reais.Research, Society and Development2022-01-31info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://rsdjournal.org/index.php/rsd/article/view/2603410.33448/rsd-v11i2.26034Research, Society and Development; Vol. 11 No. 2; e45311226034Research, Society and Development; Vol. 11 Núm. 2; e45311226034Research, Society and Development; v. 11 n. 2; e453112260342525-3409reponame:Research, Society and Developmentinstname:Universidade Federal de Itajubá (UNIFEI)instacron:UNIFEIenghttps://rsdjournal.org/index.php/rsd/article/view/26034/22745Copyright (c) 2022 Maria de Lourdes de Aguiar Silva Ferreira; Ruan Sousa Bastos; Lúcio Rocha de Lima; Edielson dos Santos Barbosa; Ionara Nayana Gomes Passos; Cleydson Breno Rodrigues dos Santos; Janilson Lima Souza; Ulisses Alves do Regohttps://creativecommons.org/licenses/by/4.0info:eu-repo/semantics/openAccessFerreira, Maria de Lourdes de Aguiar SilvaBastos, Ruan SousaLima, Lúcio Rocha deBarbosa, Edielson dos Santos Passos, Ionara Nayana GomesSantos, Cleydson Breno Rodrigues dosSouza, Janilson Lima Rego, Ulisses Alves do2022-02-07T01:42:50Zoai:ojs.pkp.sfu.ca:article/26034Revistahttps://rsdjournal.org/index.php/rsd/indexPUBhttps://rsdjournal.org/index.php/rsd/oairsd.articles@gmail.com2525-34092525-3409opendoar:2024-01-17T09:44:10.512997Research, Society and Development - Universidade Federal de Itajubá (UNIFEI)false
dc.title.none.fl_str_mv Virtual screening and molecular docking of structures with potential inhibitor of the ebolavirus glycoprotein
Proyección virtual y acoplamiento molecular de estructuras con potencial inhibitorio de la glicoproteína del ébolavirus
Triagem virtual e ancoragem molecular de estruturas com potencial inibidor da glicoproteína do ebolavírus
title Virtual screening and molecular docking of structures with potential inhibitor of the ebolavirus glycoprotein
spellingShingle Virtual screening and molecular docking of structures with potential inhibitor of the ebolavirus glycoprotein
Ferreira, Maria de Lourdes de Aguiar Silva
EBOV GP
Triagem Virtual
Ancoragem molecular.
EBOV GP
Proyección virtual
Acoplamiento molecular.
EBOV GP
Virtual Screening
Docking molecular.
title_short Virtual screening and molecular docking of structures with potential inhibitor of the ebolavirus glycoprotein
title_full Virtual screening and molecular docking of structures with potential inhibitor of the ebolavirus glycoprotein
title_fullStr Virtual screening and molecular docking of structures with potential inhibitor of the ebolavirus glycoprotein
title_full_unstemmed Virtual screening and molecular docking of structures with potential inhibitor of the ebolavirus glycoprotein
title_sort Virtual screening and molecular docking of structures with potential inhibitor of the ebolavirus glycoprotein
author Ferreira, Maria de Lourdes de Aguiar Silva
author_facet Ferreira, Maria de Lourdes de Aguiar Silva
Bastos, Ruan Sousa
Lima, Lúcio Rocha de
Barbosa, Edielson dos Santos
Passos, Ionara Nayana Gomes
Santos, Cleydson Breno Rodrigues dos
Souza, Janilson Lima
Rego, Ulisses Alves do
author_role author
author2 Bastos, Ruan Sousa
Lima, Lúcio Rocha de
Barbosa, Edielson dos Santos
Passos, Ionara Nayana Gomes
Santos, Cleydson Breno Rodrigues dos
Souza, Janilson Lima
Rego, Ulisses Alves do
author2_role author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Ferreira, Maria de Lourdes de Aguiar Silva
Bastos, Ruan Sousa
Lima, Lúcio Rocha de
Barbosa, Edielson dos Santos
Passos, Ionara Nayana Gomes
Santos, Cleydson Breno Rodrigues dos
Souza, Janilson Lima
Rego, Ulisses Alves do
dc.subject.por.fl_str_mv EBOV GP
Triagem Virtual
Ancoragem molecular.
EBOV GP
Proyección virtual
Acoplamiento molecular.
EBOV GP
Virtual Screening
Docking molecular.
topic EBOV GP
Triagem Virtual
Ancoragem molecular.
EBOV GP
Proyección virtual
Acoplamiento molecular.
EBOV GP
Virtual Screening
Docking molecular.
description Ebola is a disease caused by viruses of the ebolavirus genus that cause hemorrhagic fever with high human mortality. Symptoms of the infection include fever, headache, joint pain, diarrhea, vomiting and stomach pain. Unfortunately, there is still no effective treatment for this disease. This work aimed to perform a virtual screening of candidates with EBOV GP inhibition potential based on pharmacophores of 4 structures from the literature. The selected candidates underwent ADME analysis and later calculations of HOMO, LUMO and electrostatic potential map. 50 structures were obtained and after selection based on their ADME characteristics only 4 candidates were chosen. In the molecular anchoring process, the structure that presented the best binding energy was ZINC12 with -4.44 kcal.mol-1 and enzyme inhibition constant Ki equal to 555.9 µM. This result is fundamental, as it will subsidize other researches such as in vitro studies, or even application in real samples.
publishDate 2022
dc.date.none.fl_str_mv 2022-01-31
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://rsdjournal.org/index.php/rsd/article/view/26034
10.33448/rsd-v11i2.26034
url https://rsdjournal.org/index.php/rsd/article/view/26034
identifier_str_mv 10.33448/rsd-v11i2.26034
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv https://rsdjournal.org/index.php/rsd/article/view/26034/22745
dc.rights.driver.fl_str_mv https://creativecommons.org/licenses/by/4.0
info:eu-repo/semantics/openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by/4.0
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Research, Society and Development
publisher.none.fl_str_mv Research, Society and Development
dc.source.none.fl_str_mv Research, Society and Development; Vol. 11 No. 2; e45311226034
Research, Society and Development; Vol. 11 Núm. 2; e45311226034
Research, Society and Development; v. 11 n. 2; e45311226034
2525-3409
reponame:Research, Society and Development
instname:Universidade Federal de Itajubá (UNIFEI)
instacron:UNIFEI
instname_str Universidade Federal de Itajubá (UNIFEI)
instacron_str UNIFEI
institution UNIFEI
reponame_str Research, Society and Development
collection Research, Society and Development
repository.name.fl_str_mv Research, Society and Development - Universidade Federal de Itajubá (UNIFEI)
repository.mail.fl_str_mv rsd.articles@gmail.com
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