Virtual screening and molecular docking of structures with potential inhibitor of the ebolavirus glycoprotein
Autor(a) principal: | |
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Data de Publicação: | 2022 |
Outros Autores: | , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Research, Society and Development |
Texto Completo: | https://rsdjournal.org/index.php/rsd/article/view/26034 |
Resumo: | Ebola is a disease caused by viruses of the ebolavirus genus that cause hemorrhagic fever with high human mortality. Symptoms of the infection include fever, headache, joint pain, diarrhea, vomiting and stomach pain. Unfortunately, there is still no effective treatment for this disease. This work aimed to perform a virtual screening of candidates with EBOV GP inhibition potential based on pharmacophores of 4 structures from the literature. The selected candidates underwent ADME analysis and later calculations of HOMO, LUMO and electrostatic potential map. 50 structures were obtained and after selection based on their ADME characteristics only 4 candidates were chosen. In the molecular anchoring process, the structure that presented the best binding energy was ZINC12 with -4.44 kcal.mol-1 and enzyme inhibition constant Ki equal to 555.9 µM. This result is fundamental, as it will subsidize other researches such as in vitro studies, or even application in real samples. |
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Virtual screening and molecular docking of structures with potential inhibitor of the ebolavirus glycoproteinProyección virtual y acoplamiento molecular de estructuras con potencial inhibitorio de la glicoproteína del ébolavirusTriagem virtual e ancoragem molecular de estruturas com potencial inibidor da glicoproteína do ebolavírusEBOV GPTriagem VirtualAncoragem molecular.EBOV GPProyección virtualAcoplamiento molecular.EBOV GPVirtual ScreeningDocking molecular.Ebola is a disease caused by viruses of the ebolavirus genus that cause hemorrhagic fever with high human mortality. Symptoms of the infection include fever, headache, joint pain, diarrhea, vomiting and stomach pain. Unfortunately, there is still no effective treatment for this disease. This work aimed to perform a virtual screening of candidates with EBOV GP inhibition potential based on pharmacophores of 4 structures from the literature. The selected candidates underwent ADME analysis and later calculations of HOMO, LUMO and electrostatic potential map. 50 structures were obtained and after selection based on their ADME characteristics only 4 candidates were chosen. In the molecular anchoring process, the structure that presented the best binding energy was ZINC12 with -4.44 kcal.mol-1 and enzyme inhibition constant Ki equal to 555.9 µM. This result is fundamental, as it will subsidize other researches such as in vitro studies, or even application in real samples.El Ébola es una enfermedad causada por virus del género ébolavirus que causan fiebre hemorrágica con alta mortalidad humana. Los síntomas de la infección incluyen fiebre, dolor de cabeza, dolor en las articulaciones, diarrea, vómitos y dolor de estómago. Desafortunadamente, todavía no existe un tratamiento efectivo para esta enfermedad. Este trabajo tuvo como objetivo realizar un proyección virtual de candidatos con potencial para inhibir EBOV GP basado en farmacóforos de 4 estructuras de la literatura. Los candidatos seleccionados se sometieron a análisis ADME y posteriores cálculos de HOMO, LUMO y mapa de potencial electrostático. Se obtuvieron 50 estructuras y tras la selección en base a sus características ADME solo se eligieron 4 candidatas. En el proceso de acoplamiento molecular, la estructura que presentó mejor energía de unión fue ZINC12 con -18.59 kJ.mol-1 y constante de inhibición enzimática Ki igual a 555.9 µM. Este resultado es fundamental, ya que subsidiará otras investigaciones como estudios in vitro, o incluso su aplicación en muestras reales.O ebola é uma doença causada por vírus do gênero ebolavírus que ocasionam febre hemorrágica com alta mortalidade humana. Os sintomas da infecção compreendem febre, dor de cabeça, dores nas articulações, diarreia, vômito e dor de estômago. Infelizmente, ainda não existe tratamento eficaz para esta doença. Este trabalho teve como objetivo realizar a triagem virtual de candidatos com potencial de inibição da EBOV GP baseada em farmacóforos de 4 estruturas da literatura. Os candidatos selecionados passaram por analise ADME e posteriormente cálculos de HOMO, LUMO e mapa de potencial eletrostático. 50 estruturas foram obtidas e após seleção com bases nas suas características ADME somente 4 candidatos foram escolhidos. No processo de ancoragem molecular a estrutura que apresentou a melhor energia de ligação foi a ZINC12 com -18.59 kJ.mol-1 e constante de inibição enzimática Ki igual a 555.9 µM. Este resultado é fundamental, pois subsidiará outras pesquisas tais como estudos de in vitro, ou mesmo aplicação em amostras reais.Research, Society and Development2022-01-31info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://rsdjournal.org/index.php/rsd/article/view/2603410.33448/rsd-v11i2.26034Research, Society and Development; Vol. 11 No. 2; e45311226034Research, Society and Development; Vol. 11 Núm. 2; e45311226034Research, Society and Development; v. 11 n. 2; e453112260342525-3409reponame:Research, Society and Developmentinstname:Universidade Federal de Itajubá (UNIFEI)instacron:UNIFEIenghttps://rsdjournal.org/index.php/rsd/article/view/26034/22745Copyright (c) 2022 Maria de Lourdes de Aguiar Silva Ferreira; Ruan Sousa Bastos; Lúcio Rocha de Lima; Edielson dos Santos Barbosa; Ionara Nayana Gomes Passos; Cleydson Breno Rodrigues dos Santos; Janilson Lima Souza; Ulisses Alves do Regohttps://creativecommons.org/licenses/by/4.0info:eu-repo/semantics/openAccessFerreira, Maria de Lourdes de Aguiar SilvaBastos, Ruan SousaLima, Lúcio Rocha deBarbosa, Edielson dos Santos Passos, Ionara Nayana GomesSantos, Cleydson Breno Rodrigues dosSouza, Janilson Lima Rego, Ulisses Alves do2022-02-07T01:42:50Zoai:ojs.pkp.sfu.ca:article/26034Revistahttps://rsdjournal.org/index.php/rsd/indexPUBhttps://rsdjournal.org/index.php/rsd/oairsd.articles@gmail.com2525-34092525-3409opendoar:2024-01-17T09:44:10.512997Research, Society and Development - Universidade Federal de Itajubá (UNIFEI)false |
dc.title.none.fl_str_mv |
Virtual screening and molecular docking of structures with potential inhibitor of the ebolavirus glycoprotein Proyección virtual y acoplamiento molecular de estructuras con potencial inhibitorio de la glicoproteína del ébolavirus Triagem virtual e ancoragem molecular de estruturas com potencial inibidor da glicoproteína do ebolavírus |
title |
Virtual screening and molecular docking of structures with potential inhibitor of the ebolavirus glycoprotein |
spellingShingle |
Virtual screening and molecular docking of structures with potential inhibitor of the ebolavirus glycoprotein Ferreira, Maria de Lourdes de Aguiar Silva EBOV GP Triagem Virtual Ancoragem molecular. EBOV GP Proyección virtual Acoplamiento molecular. EBOV GP Virtual Screening Docking molecular. |
title_short |
Virtual screening and molecular docking of structures with potential inhibitor of the ebolavirus glycoprotein |
title_full |
Virtual screening and molecular docking of structures with potential inhibitor of the ebolavirus glycoprotein |
title_fullStr |
Virtual screening and molecular docking of structures with potential inhibitor of the ebolavirus glycoprotein |
title_full_unstemmed |
Virtual screening and molecular docking of structures with potential inhibitor of the ebolavirus glycoprotein |
title_sort |
Virtual screening and molecular docking of structures with potential inhibitor of the ebolavirus glycoprotein |
author |
Ferreira, Maria de Lourdes de Aguiar Silva |
author_facet |
Ferreira, Maria de Lourdes de Aguiar Silva Bastos, Ruan Sousa Lima, Lúcio Rocha de Barbosa, Edielson dos Santos Passos, Ionara Nayana Gomes Santos, Cleydson Breno Rodrigues dos Souza, Janilson Lima Rego, Ulisses Alves do |
author_role |
author |
author2 |
Bastos, Ruan Sousa Lima, Lúcio Rocha de Barbosa, Edielson dos Santos Passos, Ionara Nayana Gomes Santos, Cleydson Breno Rodrigues dos Souza, Janilson Lima Rego, Ulisses Alves do |
author2_role |
author author author author author author author |
dc.contributor.author.fl_str_mv |
Ferreira, Maria de Lourdes de Aguiar Silva Bastos, Ruan Sousa Lima, Lúcio Rocha de Barbosa, Edielson dos Santos Passos, Ionara Nayana Gomes Santos, Cleydson Breno Rodrigues dos Souza, Janilson Lima Rego, Ulisses Alves do |
dc.subject.por.fl_str_mv |
EBOV GP Triagem Virtual Ancoragem molecular. EBOV GP Proyección virtual Acoplamiento molecular. EBOV GP Virtual Screening Docking molecular. |
topic |
EBOV GP Triagem Virtual Ancoragem molecular. EBOV GP Proyección virtual Acoplamiento molecular. EBOV GP Virtual Screening Docking molecular. |
description |
Ebola is a disease caused by viruses of the ebolavirus genus that cause hemorrhagic fever with high human mortality. Symptoms of the infection include fever, headache, joint pain, diarrhea, vomiting and stomach pain. Unfortunately, there is still no effective treatment for this disease. This work aimed to perform a virtual screening of candidates with EBOV GP inhibition potential based on pharmacophores of 4 structures from the literature. The selected candidates underwent ADME analysis and later calculations of HOMO, LUMO and electrostatic potential map. 50 structures were obtained and after selection based on their ADME characteristics only 4 candidates were chosen. In the molecular anchoring process, the structure that presented the best binding energy was ZINC12 with -4.44 kcal.mol-1 and enzyme inhibition constant Ki equal to 555.9 µM. This result is fundamental, as it will subsidize other researches such as in vitro studies, or even application in real samples. |
publishDate |
2022 |
dc.date.none.fl_str_mv |
2022-01-31 |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
https://rsdjournal.org/index.php/rsd/article/view/26034 10.33448/rsd-v11i2.26034 |
url |
https://rsdjournal.org/index.php/rsd/article/view/26034 |
identifier_str_mv |
10.33448/rsd-v11i2.26034 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
https://rsdjournal.org/index.php/rsd/article/view/26034/22745 |
dc.rights.driver.fl_str_mv |
https://creativecommons.org/licenses/by/4.0 info:eu-repo/semantics/openAccess |
rights_invalid_str_mv |
https://creativecommons.org/licenses/by/4.0 |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
Research, Society and Development |
publisher.none.fl_str_mv |
Research, Society and Development |
dc.source.none.fl_str_mv |
Research, Society and Development; Vol. 11 No. 2; e45311226034 Research, Society and Development; Vol. 11 Núm. 2; e45311226034 Research, Society and Development; v. 11 n. 2; e45311226034 2525-3409 reponame:Research, Society and Development instname:Universidade Federal de Itajubá (UNIFEI) instacron:UNIFEI |
instname_str |
Universidade Federal de Itajubá (UNIFEI) |
instacron_str |
UNIFEI |
institution |
UNIFEI |
reponame_str |
Research, Society and Development |
collection |
Research, Society and Development |
repository.name.fl_str_mv |
Research, Society and Development - Universidade Federal de Itajubá (UNIFEI) |
repository.mail.fl_str_mv |
rsd.articles@gmail.com |
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1797052704024952832 |