Molecular docking of rutenum complex with epiisopyloturin and nitric oxide against nucleoside diphosphate kinase protein Leishmania

Detalhes bibliográficos
Autor(a) principal: Araújo, Joabe Lima
Data de Publicação: 2020
Outros Autores: Santos, Gardênia Taveira, Sousa, Lucas Aires de, Santos, Gabel Taveira, Silva, Welson de Freitas, Sousa, Alice de Oliveira, Rocha, Jefferson Almeida
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Research, Society and Development
Texto Completo: https://rsdjournal.org/index.php/rsd/article/view/2121
Resumo: Leishmaniasis is an infectious disease that affects both animals and humans, caused by flagellated parasites belonging to the genus Leishmania may present in different clinical forms depending on the infecting strain and the immune reaction of the host. The disease is estimated to reach about 700,000 to 1 million people, causing the deaths of 20 to 30,000 individuals annually. Thus, the present study aims to perform a molecular coupling simulation of the ruthenium complex with epiisopiloturin and nitric oxide against the protein Nucleoside diphosphate kinase from Leishmania amazonensis. The NDK 3D molecule was extracted from the PDB nucleic proteins and acids database. The 3D molecular structure of the Epiruno2 complex was designed using gaussview 5.0 software. The NDK target and Epiruno2 complex were prepared for docking simulations, where NDK was considered rigid and Epiruno2 was considered flexible. The Epiruno2 complex presented a good molecular affinity rate with the target protein, making it attractive for experimental trials in laboratories for Leishmania's NDK protein and NDKs of other pathogens, however, the drug miltefosin presented low molecular affinity for the same target, corroborating studies presented in the literature on the reduced efficacy of current drugs against leishmaniosis.
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spelling Molecular docking of rutenum complex with epiisopyloturin and nitric oxide against nucleoside diphosphate kinase protein LeishmaniaAcoplamiento molecular del complejo de rutenio con epiisopiloturina y óxido nítrico contra la proteína de nucleoside diphosphate kinase de LeishmaniaDocking molecular do complexo de rutênio com epiisopiloturina e óxido nítrico frente à proteína nucleoside diphosphate kinase da LeishmaniaBiología ComputacionalAntiinfecciososTrypanosomatinaBiologia ComputacionalAnti-InfecciososTrypanosomatina.Computational BiologyAnti-Infective AgentsTrypanosomatina.Leishmaniasis is an infectious disease that affects both animals and humans, caused by flagellated parasites belonging to the genus Leishmania may present in different clinical forms depending on the infecting strain and the immune reaction of the host. The disease is estimated to reach about 700,000 to 1 million people, causing the deaths of 20 to 30,000 individuals annually. Thus, the present study aims to perform a molecular coupling simulation of the ruthenium complex with epiisopiloturin and nitric oxide against the protein Nucleoside diphosphate kinase from Leishmania amazonensis. The NDK 3D molecule was extracted from the PDB nucleic proteins and acids database. The 3D molecular structure of the Epiruno2 complex was designed using gaussview 5.0 software. The NDK target and Epiruno2 complex were prepared for docking simulations, where NDK was considered rigid and Epiruno2 was considered flexible. The Epiruno2 complex presented a good molecular affinity rate with the target protein, making it attractive for experimental trials in laboratories for Leishmania's NDK protein and NDKs of other pathogens, however, the drug miltefosin presented low molecular affinity for the same target, corroborating studies presented in the literature on the reduced efficacy of current drugs against leishmaniosis.La leishmaniasis es una enfermedad infecciosa que afecta a animales y humanos, causada por parásitos flagelados pertenecientes al género Leishmania, y puede presentarse en diferentes formas clínicas, dependiendo de la cepa infectante y la reacción inmune del huésped. Se estima que la enfermedad afecta a alrededor de 700,000 a 1 millón de personas, causando la muerte de 20 a 30,000 personas anualmente. Por lo tanto, el presente estudio tiene como objetivo realizar una simulación de acoplamiento molecular del complejo de rutenio con epiisopiloturina y óxido nítrico contra la proteína nucleósido difosfato quinasa de Leishmania amazonensis. La molécula 3D NDK se extrajo de la base de datos de proteínas y ácidos nucleicos PDB. La estructura molecular 3D del complejo Epiruno2 se diseñó utilizando el software gaussview 5.0. El proteína NDK y el complejo Epiruno2 fueron preparados para simulaciones de anclaje, donde NDK se consideró rígido y Epiruno2 se consideró flexible. El complejo Epiruno2 tenía una buena tasa de afinidad molecular con la proteína, lo que lo hacía atractivo para las pruebas experimentales de laboratorio para la proteína Leishmania NDK y NDK de otros patógenos; sin embargo, el fármaco miltefosina mostró baja afinidad molecular con el mismo proteína, corroborando los estudios en la literatura sobre la reducción de la eficacia de los medicamentos contra la leishmaniasis actuales.A leishmaniose é uma doença infecciosa que afeta animais e humanos, causada por parasitas flagelados pertencentes ao gênero Leishmania, podendo apresentar-se em diferentes formas clínicas, dependendo da cepa infectante e da reação imune do hospedeiro. Estima-se que a doença atinja cerca de 700.000 a 1 milhão de pessoas, causando a morte de 20 a 30.000 indivíduos anualmente. Assim, o presente estudo tem como objetivo realizar uma simulação de acoplamento molecular do complexo de rutênio com epiisopiloturina e óxido nítrico contra a proteína Nucleosídeo difosfato cinase de Leishmania amazonensis. A molécula em 3D NDK foi extraída do banco de dados de proteínas e ácidos nucleicos PDB. A estrutura molecular 3D do complexo Epiruno2 foi projetada usando o software gaussview 5.0. O alvo NDK e o complexo Epiruno2 foram preparados para simulações de ancoragem, onde o NDK foi considerado rígido e o Epiruno2 foi considerado flexível. O complexo Epiruno2 apresentou boa taxa de afinidade molecular com a proteína alvo, tornando-o atrativo para ensaios experimentais em laboratórios para a proteína NDK da Leishmania e NDKs de outros patógenos, no entanto, o fármaco miltefosina apresentou baixa afinidade molecular para o mesmo alvo, corroborando com estudos apresentados na literatura sobre a eficácia reduzida dos medicamentos atuais contra a leishmaniose.Research, Society and Development2020-01-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://rsdjournal.org/index.php/rsd/article/view/212110.33448/rsd-v9i2.2121Research, Society and Development; Vol. 9 No. 2; e59922121Research, Society and Development; Vol. 9 Núm. 2; e59922121Research, Society and Development; v. 9 n. 2; e599221212525-3409reponame:Research, Society and Developmentinstname:Universidade Federal de Itajubá (UNIFEI)instacron:UNIFEIenghttps://rsdjournal.org/index.php/rsd/article/view/2121/1724Copyright (c) 2019 Joabe Lima Araújo, Gardênia Taveira Santos, Lucas Aires de Sousa, Gabel Taveira Santos, Welson de Freitas Silva, Alice de Oliveira Sousa, Jefferson Almeida Rochainfo:eu-repo/semantics/openAccessAraújo, Joabe LimaSantos, Gardênia TaveiraSousa, Lucas Aires deSantos, Gabel TaveiraSilva, Welson de FreitasSousa, Alice de OliveiraRocha, Jefferson Almeida2020-08-20T18:08:48Zoai:ojs.pkp.sfu.ca:article/2121Revistahttps://rsdjournal.org/index.php/rsd/indexPUBhttps://rsdjournal.org/index.php/rsd/oairsd.articles@gmail.com2525-34092525-3409opendoar:2024-01-17T09:26:53.220524Research, Society and Development - Universidade Federal de Itajubá (UNIFEI)false
dc.title.none.fl_str_mv Molecular docking of rutenum complex with epiisopyloturin and nitric oxide against nucleoside diphosphate kinase protein Leishmania
Acoplamiento molecular del complejo de rutenio con epiisopiloturina y óxido nítrico contra la proteína de nucleoside diphosphate kinase de Leishmania
Docking molecular do complexo de rutênio com epiisopiloturina e óxido nítrico frente à proteína nucleoside diphosphate kinase da Leishmania
title Molecular docking of rutenum complex with epiisopyloturin and nitric oxide against nucleoside diphosphate kinase protein Leishmania
spellingShingle Molecular docking of rutenum complex with epiisopyloturin and nitric oxide against nucleoside diphosphate kinase protein Leishmania
Araújo, Joabe Lima
Biología Computacional
Antiinfecciosos
Trypanosomatina
Biologia Computacional
Anti-Infecciosos
Trypanosomatina.
Computational Biology
Anti-Infective Agents
Trypanosomatina.
title_short Molecular docking of rutenum complex with epiisopyloturin and nitric oxide against nucleoside diphosphate kinase protein Leishmania
title_full Molecular docking of rutenum complex with epiisopyloturin and nitric oxide against nucleoside diphosphate kinase protein Leishmania
title_fullStr Molecular docking of rutenum complex with epiisopyloturin and nitric oxide against nucleoside diphosphate kinase protein Leishmania
title_full_unstemmed Molecular docking of rutenum complex with epiisopyloturin and nitric oxide against nucleoside diphosphate kinase protein Leishmania
title_sort Molecular docking of rutenum complex with epiisopyloturin and nitric oxide against nucleoside diphosphate kinase protein Leishmania
author Araújo, Joabe Lima
author_facet Araújo, Joabe Lima
Santos, Gardênia Taveira
Sousa, Lucas Aires de
Santos, Gabel Taveira
Silva, Welson de Freitas
Sousa, Alice de Oliveira
Rocha, Jefferson Almeida
author_role author
author2 Santos, Gardênia Taveira
Sousa, Lucas Aires de
Santos, Gabel Taveira
Silva, Welson de Freitas
Sousa, Alice de Oliveira
Rocha, Jefferson Almeida
author2_role author
author
author
author
author
author
dc.contributor.author.fl_str_mv Araújo, Joabe Lima
Santos, Gardênia Taveira
Sousa, Lucas Aires de
Santos, Gabel Taveira
Silva, Welson de Freitas
Sousa, Alice de Oliveira
Rocha, Jefferson Almeida
dc.subject.por.fl_str_mv Biología Computacional
Antiinfecciosos
Trypanosomatina
Biologia Computacional
Anti-Infecciosos
Trypanosomatina.
Computational Biology
Anti-Infective Agents
Trypanosomatina.
topic Biología Computacional
Antiinfecciosos
Trypanosomatina
Biologia Computacional
Anti-Infecciosos
Trypanosomatina.
Computational Biology
Anti-Infective Agents
Trypanosomatina.
description Leishmaniasis is an infectious disease that affects both animals and humans, caused by flagellated parasites belonging to the genus Leishmania may present in different clinical forms depending on the infecting strain and the immune reaction of the host. The disease is estimated to reach about 700,000 to 1 million people, causing the deaths of 20 to 30,000 individuals annually. Thus, the present study aims to perform a molecular coupling simulation of the ruthenium complex with epiisopiloturin and nitric oxide against the protein Nucleoside diphosphate kinase from Leishmania amazonensis. The NDK 3D molecule was extracted from the PDB nucleic proteins and acids database. The 3D molecular structure of the Epiruno2 complex was designed using gaussview 5.0 software. The NDK target and Epiruno2 complex were prepared for docking simulations, where NDK was considered rigid and Epiruno2 was considered flexible. The Epiruno2 complex presented a good molecular affinity rate with the target protein, making it attractive for experimental trials in laboratories for Leishmania's NDK protein and NDKs of other pathogens, however, the drug miltefosin presented low molecular affinity for the same target, corroborating studies presented in the literature on the reduced efficacy of current drugs against leishmaniosis.
publishDate 2020
dc.date.none.fl_str_mv 2020-01-01
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://rsdjournal.org/index.php/rsd/article/view/2121
10.33448/rsd-v9i2.2121
url https://rsdjournal.org/index.php/rsd/article/view/2121
identifier_str_mv 10.33448/rsd-v9i2.2121
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv https://rsdjournal.org/index.php/rsd/article/view/2121/1724
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Research, Society and Development
publisher.none.fl_str_mv Research, Society and Development
dc.source.none.fl_str_mv Research, Society and Development; Vol. 9 No. 2; e59922121
Research, Society and Development; Vol. 9 Núm. 2; e59922121
Research, Society and Development; v. 9 n. 2; e59922121
2525-3409
reponame:Research, Society and Development
instname:Universidade Federal de Itajubá (UNIFEI)
instacron:UNIFEI
instname_str Universidade Federal de Itajubá (UNIFEI)
instacron_str UNIFEI
institution UNIFEI
reponame_str Research, Society and Development
collection Research, Society and Development
repository.name.fl_str_mv Research, Society and Development - Universidade Federal de Itajubá (UNIFEI)
repository.mail.fl_str_mv rsd.articles@gmail.com
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