Deleção parcial do fator de transcrição ACE1 para otimização da produção de celulases por Trichoderma reesei RUT-C30

Detalhes bibliográficos
Autor(a) principal: Dudek, Débora Nakadomari
Data de Publicação: 2017
Tipo de documento: Dissertação
Idioma: por
Título da fonte: Biblioteca Digital de Teses e Dissertações do UNIOESTE
Texto Completo: http://tede.unioeste.br/handle/tede/3481
Resumo: Second generation bioethanol employs lignocellulosic materials in its preparation. One of the steps for these materials degradation utilizes cellulases produced by microorganisms. Among these, Trichoderma reesei fungus is one of the main cellulases producers used in industry. This fungus genetic modification can lead to enzimes production optimization, reducing cost and improving biofuels manufacture. Thus, the present work objective was delete the sequence encoding zinc fingers motifs of cellulase ACE1repressor transcription factor from T. reesei RUT-C30 fungus, seeking enzymatic production optimization. In primers construction for amplification ACE1 regions 5’ and 3' and the hph selection marker, which confers hygromycin B resistance, Joint Genome Institute - JGI site and the BioEdit ® program were used. The deletion cassette with pRS426 vector construction was mediated by Saccharomyces cerevisiae SC9721 yeast. After the cassette construction, T. reesei RUT-C30 transformation was made by protoplast and this transformation confirmation was effected by part of the hph using hphNestF and hphNestR amplification primers. After transformation with mutants obtained, endoglucanase, exoglucanase and total cellulase activity was quantified with carboxymethylcellulose substrates (CMC), microcrystalline cellulose (Avicel®) and Whatman paper filter (PF), respectively. The enzymatic production and biomass hydrolysis efficiency were performed comparing RUT-C30 strain for mutants. After deletion cassette construction, a 3501 bp fragment amplification confirmed the cassette formation. Posteriorly, RUT-C30 strain transformation, a 989 bp amplification was observed, confirming the 3 mutants target sequence deletion. With cellulase activity assay, 3 transformed strain showed higher enzymatic production when compared to RUT-C30 strain. In this comparison, a significant statistical difference was observed of RUT-C30Δace1-1 strain with Avicel® and PF (p <0.001) CMC (p <0.01), RUT-C30Δace1-2 strain with CMC (p<0,01) e PF (p<0,05), and RUT-C30Δace1-3 strain with Avicel (p<0,001), CMC and PF (p<0,01). The mutants also showed greater efficiency in biomass hydrolysis, with release sugar increase between 21 and 42%. Based on this study, mutants are promising for most efficient and viable ethanol production. Nevertheless, additional tests must be carried out to better understand these fungi applicability in the industrial level.
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spelling Maller, Alexandrehttp://lattes.cnpq.br/8153318875076127da Conceição Silva, José Luishttp://lattes.cnpq.br/9251091711372741Maller, Ana Cláudia Paiva Alegrehttp://lattes.cnpq.br/8189048974419765http://lattes.cnpq.br/9062171151802553Dudek, Débora Nakadomari2018-03-05T19:50:05Z2017-02-07DUDEK, Débora Nakadomari. Deleção parcial do fator de transcrição ACE1 para otimização da produção de celulases por Trichoderma reesei RUT-C30. 2017. 56 f. Dissertação (Mestrado - Programa de Pós-Graduação em Ciências Farmacêuticas) - Universidade Estadual do Oeste do Paraná, Cascavel, 2017.http://tede.unioeste.br/handle/tede/3481Second generation bioethanol employs lignocellulosic materials in its preparation. One of the steps for these materials degradation utilizes cellulases produced by microorganisms. Among these, Trichoderma reesei fungus is one of the main cellulases producers used in industry. This fungus genetic modification can lead to enzimes production optimization, reducing cost and improving biofuels manufacture. Thus, the present work objective was delete the sequence encoding zinc fingers motifs of cellulase ACE1repressor transcription factor from T. reesei RUT-C30 fungus, seeking enzymatic production optimization. In primers construction for amplification ACE1 regions 5’ and 3' and the hph selection marker, which confers hygromycin B resistance, Joint Genome Institute - JGI site and the BioEdit ® program were used. The deletion cassette with pRS426 vector construction was mediated by Saccharomyces cerevisiae SC9721 yeast. After the cassette construction, T. reesei RUT-C30 transformation was made by protoplast and this transformation confirmation was effected by part of the hph using hphNestF and hphNestR amplification primers. After transformation with mutants obtained, endoglucanase, exoglucanase and total cellulase activity was quantified with carboxymethylcellulose substrates (CMC), microcrystalline cellulose (Avicel®) and Whatman paper filter (PF), respectively. The enzymatic production and biomass hydrolysis efficiency were performed comparing RUT-C30 strain for mutants. After deletion cassette construction, a 3501 bp fragment amplification confirmed the cassette formation. Posteriorly, RUT-C30 strain transformation, a 989 bp amplification was observed, confirming the 3 mutants target sequence deletion. With cellulase activity assay, 3 transformed strain showed higher enzymatic production when compared to RUT-C30 strain. In this comparison, a significant statistical difference was observed of RUT-C30Δace1-1 strain with Avicel® and PF (p <0.001) CMC (p <0.01), RUT-C30Δace1-2 strain with CMC (p<0,01) e PF (p<0,05), and RUT-C30Δace1-3 strain with Avicel (p<0,001), CMC and PF (p<0,01). The mutants also showed greater efficiency in biomass hydrolysis, with release sugar increase between 21 and 42%. Based on this study, mutants are promising for most efficient and viable ethanol production. Nevertheless, additional tests must be carried out to better understand these fungi applicability in the industrial level.O bioetanol de segunda geração emprega materiais lignocelulósicos na sua elaboração. Uma das etapas para a degradação destes materiais utiliza celulases produzidas por microrganismos. Dentre estes, o fungo Trichoderma reesei é um dos principais produtores de celulases utilizadas na indústria. A modificação genética deste fungo pode levar à otimização da produção de suas enzimas, diminuindo o custo e melhorando a fabricação de biocombustíveis. Desta forma, o objetivo do trabalho foi deletar a região dos motivos dedos de zinco no gene que codifica o fator de transcrição repressor de celulase ACE1 do fungo T. reesei RUT-C30, buscando a otimização na produção enzimática. Na construção dos primers para amplificação das regiões 5’ e 3’ de ace1 e do marcador de seleção hph, que confere resistência à higromicina B, utilizou-se o site Joint Genome Institute – JGI e o programa BioEdit®. A construção do cassete de deleção com o vetor pRS426 foi mediado pela levedura Saccharomyces cerevisiae SC9721. Posteriormente, a construção do cassete, a transformação de T. reesei RUT-C30 foi realizada através de protoplasto e a confirmação desta transformação foi efetuada por amplificação de parte do hph utilizando os primers hphNestF e hphNestR. Após a transformação, com os mutantes obtidos, a atividade de endoglucanase, exoglucanase e celulase total foi quantificada com os substratos carboximetilcelulose (CMC), celulose microcristalina (Avicel®) e papel de filtro Whatman (PF), respectivamente. A produção enzimática e a eficiência na hidrólise da biomassa foram realizadas comparando-se a linhagem RUT-C30 aos mutantes. Após a construção do cassete de deleção, a amplificação de um fragmento de 3501 pb confirmou a formação do cassete. E, posteriormente à transformação da linhagem RUT-C30, o amplificado de 989 pb foi observado, confirmando a deleção da sequência alvo em 3 mutantes. Com o ensaio de atividade de celulases, as 3 linhagens transformadas mostraram maior produção enzimática quando comparadas à linhagem RUT-C30. Nessa comparação, foi observada diferença estatística significativa da linhagem RUT-C30Δace1-1 com Avicel® e PF (p<0,001), da linhagem RUTC30Δace1- 2 com CMC (p<0,01) e PF (p<0,05) e da linhagem RUT-C30Δace1-3 com Avicel (p<0,001), CMC e PF (p<0,01). Os mutantes também apresentaram maior eficiência na hidrólise da biomassa, com aumento na liberação de açúcar entre 21 e 42%. Com base nos dados deste estudo, os mutantes apresentam-se promissores para a produção mais eficiente e viável de etanol. Apesar disso, testes adicionais devem ser realizados para melhor entendimento da aplicabilidade destes fungos a nível industrial.Submitted by Neusa Fagundes (neusa.fagundes@unioeste.br) on 2018-03-05T19:50:05Z No. of bitstreams: 2 Debora_Dudek2017.pdf: 1099947 bytes, checksum: eb7356b2bdfdfe7d3d4da8e48d12d05c (MD5) license_rdf: 0 bytes, checksum: d41d8cd98f00b204e9800998ecf8427e (MD5)Made available in DSpace on 2018-03-05T19:50:05Z (GMT). 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dc.title.por.fl_str_mv Deleção parcial do fator de transcrição ACE1 para otimização da produção de celulases por Trichoderma reesei RUT-C30
dc.title.alternative.eng.fl_str_mv Partial deletion of ACE1 transcription factor for optimization Trichoderma reesei RUT-C30 cellulase production
title Deleção parcial do fator de transcrição ACE1 para otimização da produção de celulases por Trichoderma reesei RUT-C30
spellingShingle Deleção parcial do fator de transcrição ACE1 para otimização da produção de celulases por Trichoderma reesei RUT-C30
Dudek, Débora Nakadomari
Fungo
Cassete de deleção
Transformação
Material lignocelulósico
Bioetanol
Fungus
Deletion cassette
Transformation
Lignocellulosic material
Bioethanol
CIENCIAS DA SAUDE::FARMACIA
title_short Deleção parcial do fator de transcrição ACE1 para otimização da produção de celulases por Trichoderma reesei RUT-C30
title_full Deleção parcial do fator de transcrição ACE1 para otimização da produção de celulases por Trichoderma reesei RUT-C30
title_fullStr Deleção parcial do fator de transcrição ACE1 para otimização da produção de celulases por Trichoderma reesei RUT-C30
title_full_unstemmed Deleção parcial do fator de transcrição ACE1 para otimização da produção de celulases por Trichoderma reesei RUT-C30
title_sort Deleção parcial do fator de transcrição ACE1 para otimização da produção de celulases por Trichoderma reesei RUT-C30
author Dudek, Débora Nakadomari
author_facet Dudek, Débora Nakadomari
author_role author
dc.contributor.advisor1.fl_str_mv Maller, Alexandre
dc.contributor.advisor1Lattes.fl_str_mv http://lattes.cnpq.br/8153318875076127
dc.contributor.referee1.fl_str_mv da Conceição Silva, José Luis
dc.contributor.referee1Lattes.fl_str_mv http://lattes.cnpq.br/9251091711372741
dc.contributor.referee2.fl_str_mv Maller, Ana Cláudia Paiva Alegre
dc.contributor.referee2Lattes.fl_str_mv http://lattes.cnpq.br/8189048974419765
dc.contributor.authorLattes.fl_str_mv http://lattes.cnpq.br/9062171151802553
dc.contributor.author.fl_str_mv Dudek, Débora Nakadomari
contributor_str_mv Maller, Alexandre
da Conceição Silva, José Luis
Maller, Ana Cláudia Paiva Alegre
dc.subject.por.fl_str_mv Fungo
Cassete de deleção
Transformação
Material lignocelulósico
Bioetanol
topic Fungo
Cassete de deleção
Transformação
Material lignocelulósico
Bioetanol
Fungus
Deletion cassette
Transformation
Lignocellulosic material
Bioethanol
CIENCIAS DA SAUDE::FARMACIA
dc.subject.eng.fl_str_mv Fungus
Deletion cassette
Transformation
Lignocellulosic material
Bioethanol
dc.subject.cnpq.fl_str_mv CIENCIAS DA SAUDE::FARMACIA
description Second generation bioethanol employs lignocellulosic materials in its preparation. One of the steps for these materials degradation utilizes cellulases produced by microorganisms. Among these, Trichoderma reesei fungus is one of the main cellulases producers used in industry. This fungus genetic modification can lead to enzimes production optimization, reducing cost and improving biofuels manufacture. Thus, the present work objective was delete the sequence encoding zinc fingers motifs of cellulase ACE1repressor transcription factor from T. reesei RUT-C30 fungus, seeking enzymatic production optimization. In primers construction for amplification ACE1 regions 5’ and 3' and the hph selection marker, which confers hygromycin B resistance, Joint Genome Institute - JGI site and the BioEdit ® program were used. The deletion cassette with pRS426 vector construction was mediated by Saccharomyces cerevisiae SC9721 yeast. After the cassette construction, T. reesei RUT-C30 transformation was made by protoplast and this transformation confirmation was effected by part of the hph using hphNestF and hphNestR amplification primers. After transformation with mutants obtained, endoglucanase, exoglucanase and total cellulase activity was quantified with carboxymethylcellulose substrates (CMC), microcrystalline cellulose (Avicel®) and Whatman paper filter (PF), respectively. The enzymatic production and biomass hydrolysis efficiency were performed comparing RUT-C30 strain for mutants. After deletion cassette construction, a 3501 bp fragment amplification confirmed the cassette formation. Posteriorly, RUT-C30 strain transformation, a 989 bp amplification was observed, confirming the 3 mutants target sequence deletion. With cellulase activity assay, 3 transformed strain showed higher enzymatic production when compared to RUT-C30 strain. In this comparison, a significant statistical difference was observed of RUT-C30Δace1-1 strain with Avicel® and PF (p <0.001) CMC (p <0.01), RUT-C30Δace1-2 strain with CMC (p<0,01) e PF (p<0,05), and RUT-C30Δace1-3 strain with Avicel (p<0,001), CMC and PF (p<0,01). The mutants also showed greater efficiency in biomass hydrolysis, with release sugar increase between 21 and 42%. Based on this study, mutants are promising for most efficient and viable ethanol production. Nevertheless, additional tests must be carried out to better understand these fungi applicability in the industrial level.
publishDate 2017
dc.date.issued.fl_str_mv 2017-02-07
dc.date.accessioned.fl_str_mv 2018-03-05T19:50:05Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
format masterThesis
status_str publishedVersion
dc.identifier.citation.fl_str_mv DUDEK, Débora Nakadomari. Deleção parcial do fator de transcrição ACE1 para otimização da produção de celulases por Trichoderma reesei RUT-C30. 2017. 56 f. Dissertação (Mestrado - Programa de Pós-Graduação em Ciências Farmacêuticas) - Universidade Estadual do Oeste do Paraná, Cascavel, 2017.
dc.identifier.uri.fl_str_mv http://tede.unioeste.br/handle/tede/3481
identifier_str_mv DUDEK, Débora Nakadomari. Deleção parcial do fator de transcrição ACE1 para otimização da produção de celulases por Trichoderma reesei RUT-C30. 2017. 56 f. Dissertação (Mestrado - Programa de Pós-Graduação em Ciências Farmacêuticas) - Universidade Estadual do Oeste do Paraná, Cascavel, 2017.
url http://tede.unioeste.br/handle/tede/3481
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language por
dc.relation.por.fl_str_mv UNIOESTE, CAPES e FUNDAÇÃO ARAUCÁRIA
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600
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dc.publisher.none.fl_str_mv Universidade Estadual do Oeste do Paraná
Cascavel
dc.publisher.program.fl_str_mv Programa de Pós-Graduação em Ciências Farmacêuticas
dc.publisher.initials.fl_str_mv UNIOESTE
dc.publisher.country.fl_str_mv Brasil
dc.publisher.department.fl_str_mv Centro de Ciências Médicas e Farmacêuticas
publisher.none.fl_str_mv Universidade Estadual do Oeste do Paraná
Cascavel
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repository.name.fl_str_mv Biblioteca Digital de Teses e Dissertações do UNIOESTE - Universidade Estadual do Oeste do Paraná (UNIOESTE)
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