CLONAGEM E EXPRESSÃO DO GENE xynB3 QUE CODIFICA A β-XILOSIDASE III NA BACTÉRIA AQUÁTICA Caulobacter crescentus

Detalhes bibliográficos
Autor(a) principal: Bosetto, Adilson
Data de Publicação: 2015
Tipo de documento: Dissertação
Idioma: por
Título da fonte: Biblioteca Digital de Teses e Dissertações do UNIOESTE
Texto Completo: http://tede.unioeste.br:8080/tede/handle/tede/2660
Resumo: The application of enzymes in industrial processes, in its broad sense, has shown the market evolution for innovative alternatives for preserving the environment. Brazil has a great potential to develop some technologies, which allow the use of such materials as substratum for products with higher added value, due to the large amount of lignocellulose as waste that comes from agriculture. Therefore, the analysis of genes expression related to microbial degradation of plant cell wall has caught the researchers attention, mainly because it is associated to the possibility of controlled large-scale synthesis of enzymes applied in biofuel production. In this context, the Gram-negative bacterium C. crescentus is found as a promising microorganism for biotechnological exploitation due to its ability on degrading xylan, the major component of plant hemicellulose. There are several genes in the bacterial genome that codify to Xylanases and β-Xylosidases. In order to purify and biochemically characterize the β-Xylosidase III protein of C. crescentus, xynB3 gene (CCNA_00856) that contains 1,623 nucleotides and encodes a protein with conserved domains of β-Xylosidase with 540 amino acid residues has been studied. Therefore, xynB3 gene was isolated from genomic DNA of C. crescentus NA1000 by Polymerase Chain Reaction (PCR) using specific primers. The single amplification product was cloned into pJet1.2Blunt vector in non-cohesive sites and reintroduced in vector of pTrcHisA expression within the reading frame to produce a histidine tag at the amino-terminus area of fusion protein. The obtained construction was denominated pTrcHis-xynB3 and the confirmation of its gene identification was figured out by the DNA sequence after insertion into the TOP10 E. coli strain and subsequent experimental tests of expression in different temperature of growth, IPTG concentrations and induction times. The recombinant protein was overexpressed into inclusion bodies, thus, in a non-soluble form. Different induction and purification protocols were used to obtain the β-xylosidase III pure of C. crescentus, in native or non-native form. However, assays of enzymatic activity with different substrates neither demonstrated β-xylosidase activity nor detectable levels of the protein. These results suggest that the enzyme was not active during the assays, due its expression in inclusion bodies. This suggests that this protein may have a toxic effect on E. coli when expressed at high levels. Thus, this trial contributes to additional data about the xylanolytic complex concerning the aquatic bacterium C. crescentus.
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spelling Simão, Rita de Cássia GarciaCPF:09570471859http://lattes.cnpq.br/7967975885148688Sene, LucianeCPF:08324645896http://lattes.cnpq.br/2582084888410031Ribeiro, Cristina Beatriz ArocaCPF:03790158976http://lattes.cnpq.br/6069253707912762CPF:06629317939http://lattes.cnpq.br/2197876324013380Bosetto, Adilson2017-07-10T19:23:52Z2015-08-252015-03-10BOSETTO, Adilson. CLONING AND EXPRESSION OF xynB3 GENE CODING FOR -XYLOSIDASE III IN Caulobacter crescentus AQUATIC BACTERIUM. 2015. 58 f. Dissertação (Mestrado em Engenharia) - Universidade Estadual do Oeste do Parana, Cascavel, 2015.http://tede.unioeste.br:8080/tede/handle/tede/2660The application of enzymes in industrial processes, in its broad sense, has shown the market evolution for innovative alternatives for preserving the environment. Brazil has a great potential to develop some technologies, which allow the use of such materials as substratum for products with higher added value, due to the large amount of lignocellulose as waste that comes from agriculture. Therefore, the analysis of genes expression related to microbial degradation of plant cell wall has caught the researchers attention, mainly because it is associated to the possibility of controlled large-scale synthesis of enzymes applied in biofuel production. In this context, the Gram-negative bacterium C. crescentus is found as a promising microorganism for biotechnological exploitation due to its ability on degrading xylan, the major component of plant hemicellulose. There are several genes in the bacterial genome that codify to Xylanases and β-Xylosidases. In order to purify and biochemically characterize the β-Xylosidase III protein of C. crescentus, xynB3 gene (CCNA_00856) that contains 1,623 nucleotides and encodes a protein with conserved domains of β-Xylosidase with 540 amino acid residues has been studied. Therefore, xynB3 gene was isolated from genomic DNA of C. crescentus NA1000 by Polymerase Chain Reaction (PCR) using specific primers. The single amplification product was cloned into pJet1.2Blunt vector in non-cohesive sites and reintroduced in vector of pTrcHisA expression within the reading frame to produce a histidine tag at the amino-terminus area of fusion protein. The obtained construction was denominated pTrcHis-xynB3 and the confirmation of its gene identification was figured out by the DNA sequence after insertion into the TOP10 E. coli strain and subsequent experimental tests of expression in different temperature of growth, IPTG concentrations and induction times. The recombinant protein was overexpressed into inclusion bodies, thus, in a non-soluble form. Different induction and purification protocols were used to obtain the β-xylosidase III pure of C. crescentus, in native or non-native form. However, assays of enzymatic activity with different substrates neither demonstrated β-xylosidase activity nor detectable levels of the protein. These results suggest that the enzyme was not active during the assays, due its expression in inclusion bodies. This suggests that this protein may have a toxic effect on E. coli when expressed at high levels. Thus, this trial contributes to additional data about the xylanolytic complex concerning the aquatic bacterium C. crescentus.A utilização de enzimas em processos industriais, no seu sentido mais amplo, demonstra a evolução do mercado em relação a alternativas inovadoras de preservação do meio ambiente. Devido à grande quantidade de material lignocelulósico residuário, proveniente da agricultura, o Brasil é um país com elevado potencial para o desenvolvimento de tecnologias que possibilitem a utilização desses materiais como substrato para produtos de maior valor agregado. Dessa forma, o estudo da expressão de genes microbianos relacionados com a degradação da parede celular vegetal tem despertado a atenção de pesquisadores, principalmente pelo fato de estar relacionado com a possibilidade de síntese controlada e em larga escala de enzimas utilizadas na produção de biocombustíveis. Neste contexto, a bactéria gram-negativa Caulobacter crescentus encontra-se como um microrganismo promissor para a exploração biotecnológica em função da capacidade que tem de degradar o xilano, principal componente hemicelulósico das plantas. Essa bactéria contém em seu genoma vários genes que codificam para xilanases e β-xilosidases. Dentre eles o gene xynB3 (CCNA_00856), que apresenta 1623 nucleotídeos e codifica uma proteína contendo domínios conservados de β-xilosidase, com 540 resíduos de aminoácidos, denominada neste trabalho como β-xilosidase III de C. crescentus. Com o objetivo de possibilitar em estudos futuros a caracterização bioquímica dessa proteína, foi estudado o gene xynB3. Para isso, xynB3 foi isolado a partir do DNA genômico de C. crescentus NA1000 por Reação em Cadeia da Polimerase (PCR) usando oligonucleotídeos específicos. O único produto de amplificação foi clonado no vetor pJet1.2blunt em sítios não coesivos e reintroduzido no vetor de expressão pTrcHisA dentro do quadro de leitura para a produção de uma cauda de histidinas na região amino-terminal da proteína de fusão. A construção obtida foi denominada pTricHis-xynB3 e após confirmação da identidade da mesma por sequenciamento de DNA foi inserida na cepa TOP10 de Escherichia coli e submetida a ensaios experimentais de expressão com diferentes temperaturas de crescimento, concentrações de IPTG e tempos de indução. A proteína recombinante foi super-expressa em corpos de inclusão, portanto, em uma forma não solúvel. Diferentes protocolos de indução e purificação foram empregados para obtenção da β-xilosidase III de C. crescentus pura, em forma nativa ou não nativa. Entretanto, nos ensaios de atividade enzimática, com diferentes substratos, foram obtidos níveis de atividade de β-xilosidase não detectáveis pelas ferramentas utilizadas. Esses resultados sugerem que a enzima não se mostrou ativa durante os ensaios, em função da formação de corpos de inclusão. Isso leva a crer que essa proteína pode apresentar efeito tóxico para E. coli quando expressa em níveis elevados. Assim, este trabalho contribui com dados adicionais a cerca do complexo xilanolítico da bactéria aquática C. crescentus.Made available in DSpace on 2017-07-10T19:23:52Z (GMT). No. of bitstreams: 1 Dissertacao_ Adilson Bosetto 2015 PDF.pdf: 2419034 bytes, checksum: 3fdc9e711199e04fe0746f89b07c4bea (MD5) Previous issue date: 2015-03-10application/pdfporUniversidade Estadual do Oeste do ParanaPrograma de Pós-Graduação "Stricto Sensu" em Engenharia AgrícolaUNIOESTEBREngenharia&#946-xilosidase recombinante, C. crescentus, resíduos agroindustriais, super-expressão enzimática.recombinant &#946-XylosidaseC. crescentusagroindustrial residuesenzymatic overexpression.CNPQ::CIENCIAS AGRARIAS::ENGENHARIA AGRICOLACLONAGEM E EXPRESSÃO DO GENE xynB3 QUE CODIFICA A β-XILOSIDASE III NA BACTÉRIA AQUÁTICA Caulobacter crescentusCLONING AND EXPRESSION OF xynB3 GENE CODING FOR -XYLOSIDASE III IN Caulobacter crescentus AQUATIC BACTERIUMinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisinfo:eu-repo/semantics/openAccessreponame:Biblioteca Digital de Teses e Dissertações do UNIOESTEinstname:Universidade Estadual do Oeste do Paraná (UNIOESTE)instacron:UNIOESTEORIGINALDissertacao_ Adilson Bosetto 2015 PDF.pdfapplication/pdf2419034http://tede.unioeste.br:8080/tede/bitstream/tede/2660/1/Dissertacao_+Adilson+Bosetto+2015+PDF.pdf3fdc9e711199e04fe0746f89b07c4beaMD51tede/26602017-07-10 16:23:52.722oai:tede.unioeste.br:tede/2660Biblioteca Digital de Teses e Dissertaçõeshttp://tede.unioeste.br/PUBhttp://tede.unioeste.br/oai/requestbiblioteca.repositorio@unioeste.bropendoar:2017-07-10T19:23:52Biblioteca Digital de Teses e Dissertações do UNIOESTE - Universidade Estadual do Oeste do Paraná (UNIOESTE)false
dc.title.por.fl_str_mv CLONAGEM E EXPRESSÃO DO GENE xynB3 QUE CODIFICA A β-XILOSIDASE III NA BACTÉRIA AQUÁTICA Caulobacter crescentus
dc.title.alternative.eng.fl_str_mv CLONING AND EXPRESSION OF xynB3 GENE CODING FOR -XYLOSIDASE III IN Caulobacter crescentus AQUATIC BACTERIUM
title CLONAGEM E EXPRESSÃO DO GENE xynB3 QUE CODIFICA A β-XILOSIDASE III NA BACTÉRIA AQUÁTICA Caulobacter crescentus
spellingShingle CLONAGEM E EXPRESSÃO DO GENE xynB3 QUE CODIFICA A β-XILOSIDASE III NA BACTÉRIA AQUÁTICA Caulobacter crescentus
Bosetto, Adilson
&#946
-xilosidase recombinante, C. crescentus, resíduos agroindustriais, super-expressão enzimática.
recombinant &#946
-Xylosidase
C. crescentus
agroindustrial residues
enzymatic overexpression.
CNPQ::CIENCIAS AGRARIAS::ENGENHARIA AGRICOLA
title_short CLONAGEM E EXPRESSÃO DO GENE xynB3 QUE CODIFICA A β-XILOSIDASE III NA BACTÉRIA AQUÁTICA Caulobacter crescentus
title_full CLONAGEM E EXPRESSÃO DO GENE xynB3 QUE CODIFICA A β-XILOSIDASE III NA BACTÉRIA AQUÁTICA Caulobacter crescentus
title_fullStr CLONAGEM E EXPRESSÃO DO GENE xynB3 QUE CODIFICA A β-XILOSIDASE III NA BACTÉRIA AQUÁTICA Caulobacter crescentus
title_full_unstemmed CLONAGEM E EXPRESSÃO DO GENE xynB3 QUE CODIFICA A β-XILOSIDASE III NA BACTÉRIA AQUÁTICA Caulobacter crescentus
title_sort CLONAGEM E EXPRESSÃO DO GENE xynB3 QUE CODIFICA A β-XILOSIDASE III NA BACTÉRIA AQUÁTICA Caulobacter crescentus
author Bosetto, Adilson
author_facet Bosetto, Adilson
author_role author
dc.contributor.advisor1.fl_str_mv Simão, Rita de Cássia Garcia
dc.contributor.advisor1ID.fl_str_mv CPF:09570471859
dc.contributor.advisor1Lattes.fl_str_mv http://lattes.cnpq.br/7967975885148688
dc.contributor.referee1.fl_str_mv Sene, Luciane
dc.contributor.referee1ID.fl_str_mv CPF:08324645896
dc.contributor.referee1Lattes.fl_str_mv http://lattes.cnpq.br/2582084888410031
dc.contributor.referee2.fl_str_mv Ribeiro, Cristina Beatriz Aroca
dc.contributor.referee2ID.fl_str_mv CPF:03790158976
dc.contributor.referee2Lattes.fl_str_mv http://lattes.cnpq.br/6069253707912762
dc.contributor.authorID.fl_str_mv CPF:06629317939
dc.contributor.authorLattes.fl_str_mv http://lattes.cnpq.br/2197876324013380
dc.contributor.author.fl_str_mv Bosetto, Adilson
contributor_str_mv Simão, Rita de Cássia Garcia
Sene, Luciane
Ribeiro, Cristina Beatriz Aroca
dc.subject.por.fl_str_mv &#946
-xilosidase recombinante, C. crescentus, resíduos agroindustriais, super-expressão enzimática.
topic &#946
-xilosidase recombinante, C. crescentus, resíduos agroindustriais, super-expressão enzimática.
recombinant &#946
-Xylosidase
C. crescentus
agroindustrial residues
enzymatic overexpression.
CNPQ::CIENCIAS AGRARIAS::ENGENHARIA AGRICOLA
dc.subject.eng.fl_str_mv recombinant &#946
-Xylosidase
C. crescentus
agroindustrial residues
enzymatic overexpression.
dc.subject.cnpq.fl_str_mv CNPQ::CIENCIAS AGRARIAS::ENGENHARIA AGRICOLA
description The application of enzymes in industrial processes, in its broad sense, has shown the market evolution for innovative alternatives for preserving the environment. Brazil has a great potential to develop some technologies, which allow the use of such materials as substratum for products with higher added value, due to the large amount of lignocellulose as waste that comes from agriculture. Therefore, the analysis of genes expression related to microbial degradation of plant cell wall has caught the researchers attention, mainly because it is associated to the possibility of controlled large-scale synthesis of enzymes applied in biofuel production. In this context, the Gram-negative bacterium C. crescentus is found as a promising microorganism for biotechnological exploitation due to its ability on degrading xylan, the major component of plant hemicellulose. There are several genes in the bacterial genome that codify to Xylanases and β-Xylosidases. In order to purify and biochemically characterize the β-Xylosidase III protein of C. crescentus, xynB3 gene (CCNA_00856) that contains 1,623 nucleotides and encodes a protein with conserved domains of β-Xylosidase with 540 amino acid residues has been studied. Therefore, xynB3 gene was isolated from genomic DNA of C. crescentus NA1000 by Polymerase Chain Reaction (PCR) using specific primers. The single amplification product was cloned into pJet1.2Blunt vector in non-cohesive sites and reintroduced in vector of pTrcHisA expression within the reading frame to produce a histidine tag at the amino-terminus area of fusion protein. The obtained construction was denominated pTrcHis-xynB3 and the confirmation of its gene identification was figured out by the DNA sequence after insertion into the TOP10 E. coli strain and subsequent experimental tests of expression in different temperature of growth, IPTG concentrations and induction times. The recombinant protein was overexpressed into inclusion bodies, thus, in a non-soluble form. Different induction and purification protocols were used to obtain the β-xylosidase III pure of C. crescentus, in native or non-native form. However, assays of enzymatic activity with different substrates neither demonstrated β-xylosidase activity nor detectable levels of the protein. These results suggest that the enzyme was not active during the assays, due its expression in inclusion bodies. This suggests that this protein may have a toxic effect on E. coli when expressed at high levels. Thus, this trial contributes to additional data about the xylanolytic complex concerning the aquatic bacterium C. crescentus.
publishDate 2015
dc.date.available.fl_str_mv 2015-08-25
dc.date.issued.fl_str_mv 2015-03-10
dc.date.accessioned.fl_str_mv 2017-07-10T19:23:52Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
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dc.identifier.citation.fl_str_mv BOSETTO, Adilson. CLONING AND EXPRESSION OF xynB3 GENE CODING FOR -XYLOSIDASE III IN Caulobacter crescentus AQUATIC BACTERIUM. 2015. 58 f. Dissertação (Mestrado em Engenharia) - Universidade Estadual do Oeste do Parana, Cascavel, 2015.
dc.identifier.uri.fl_str_mv http://tede.unioeste.br:8080/tede/handle/tede/2660
identifier_str_mv BOSETTO, Adilson. CLONING AND EXPRESSION OF xynB3 GENE CODING FOR -XYLOSIDASE III IN Caulobacter crescentus AQUATIC BACTERIUM. 2015. 58 f. Dissertação (Mestrado em Engenharia) - Universidade Estadual do Oeste do Parana, Cascavel, 2015.
url http://tede.unioeste.br:8080/tede/handle/tede/2660
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