MirtronDB: A mirtron knowledge base

Detalhes bibliográficos
Autor(a) principal: Da Fonseca, Bruno Henrique Ribeiro
Data de Publicação: 2019
Outros Autores: Domingues, Douglas Silva [UNESP], Paschoal, Alexandre Rossi
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1093/bioinformatics/btz153
http://hdl.handle.net/11449/197965
Resumo: Motivation: Mirtrons arise from short introns with atypical cleavage by using the splicing mechanism. In the current literature, there is no repository centralizing and organizing the data available to the public. To fill this gap, we developed mirtronDB, the first knowledge database dedicated to mirtron, and it is available at http://mirtrondb.cp.utfpr.edu.br/. MirtronDB currently contains a total of 1407 mirtron precursors and 2426 mirtron mature sequences in 18 species. Results: Through a user-friendly interface, users can now browse and search mirtrons by organism, organism group, type and name. MirtronDB is a specialized resource that provides free and user-friendly access to knowledge on mirtron data. Availability and implementation: MirtronDB is available at http://mirtrondb.cp.utfpr.edu.br/.
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spelling MirtronDB: A mirtron knowledge baseMotivation: Mirtrons arise from short introns with atypical cleavage by using the splicing mechanism. In the current literature, there is no repository centralizing and organizing the data available to the public. To fill this gap, we developed mirtronDB, the first knowledge database dedicated to mirtron, and it is available at http://mirtrondb.cp.utfpr.edu.br/. MirtronDB currently contains a total of 1407 mirtron precursors and 2426 mirtron mature sequences in 18 species. Results: Through a user-friendly interface, users can now browse and search mirtrons by organism, organism group, type and name. MirtronDB is a specialized resource that provides free and user-friendly access to knowledge on mirtron data. Availability and implementation: MirtronDB is available at http://mirtrondb.cp.utfpr.edu.br/.Bioinformatics Graduation Program (PPGBIOINFO) Department of Computer Science Federal University of Technology - ParanáDepartment of Botany Institute of Biosciences São Paulo State University UNESPDepartment of Botany Institute of Biosciences São Paulo State University UNESPFederal University of Technology - ParanáUniversidade Estadual Paulista (Unesp)Da Fonseca, Bruno Henrique RibeiroDomingues, Douglas Silva [UNESP]Paschoal, Alexandre Rossi2020-12-12T00:55:19Z2020-12-12T00:55:19Z2019-10-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article3873-3874http://dx.doi.org/10.1093/bioinformatics/btz153Bioinformatics, v. 35, n. 19, p. 3873-3874, 2019.1460-20591367-4803http://hdl.handle.net/11449/19796510.1093/bioinformatics/btz1532-s2.0-85072698779Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengBioinformaticsinfo:eu-repo/semantics/openAccess2021-10-23T07:27:47Zoai:repositorio.unesp.br:11449/197965Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T14:25:24.134266Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv MirtronDB: A mirtron knowledge base
title MirtronDB: A mirtron knowledge base
spellingShingle MirtronDB: A mirtron knowledge base
Da Fonseca, Bruno Henrique Ribeiro
title_short MirtronDB: A mirtron knowledge base
title_full MirtronDB: A mirtron knowledge base
title_fullStr MirtronDB: A mirtron knowledge base
title_full_unstemmed MirtronDB: A mirtron knowledge base
title_sort MirtronDB: A mirtron knowledge base
author Da Fonseca, Bruno Henrique Ribeiro
author_facet Da Fonseca, Bruno Henrique Ribeiro
Domingues, Douglas Silva [UNESP]
Paschoal, Alexandre Rossi
author_role author
author2 Domingues, Douglas Silva [UNESP]
Paschoal, Alexandre Rossi
author2_role author
author
dc.contributor.none.fl_str_mv Federal University of Technology - Paraná
Universidade Estadual Paulista (Unesp)
dc.contributor.author.fl_str_mv Da Fonseca, Bruno Henrique Ribeiro
Domingues, Douglas Silva [UNESP]
Paschoal, Alexandre Rossi
description Motivation: Mirtrons arise from short introns with atypical cleavage by using the splicing mechanism. In the current literature, there is no repository centralizing and organizing the data available to the public. To fill this gap, we developed mirtronDB, the first knowledge database dedicated to mirtron, and it is available at http://mirtrondb.cp.utfpr.edu.br/. MirtronDB currently contains a total of 1407 mirtron precursors and 2426 mirtron mature sequences in 18 species. Results: Through a user-friendly interface, users can now browse and search mirtrons by organism, organism group, type and name. MirtronDB is a specialized resource that provides free and user-friendly access to knowledge on mirtron data. Availability and implementation: MirtronDB is available at http://mirtrondb.cp.utfpr.edu.br/.
publishDate 2019
dc.date.none.fl_str_mv 2019-10-01
2020-12-12T00:55:19Z
2020-12-12T00:55:19Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1093/bioinformatics/btz153
Bioinformatics, v. 35, n. 19, p. 3873-3874, 2019.
1460-2059
1367-4803
http://hdl.handle.net/11449/197965
10.1093/bioinformatics/btz153
2-s2.0-85072698779
url http://dx.doi.org/10.1093/bioinformatics/btz153
http://hdl.handle.net/11449/197965
identifier_str_mv Bioinformatics, v. 35, n. 19, p. 3873-3874, 2019.
1460-2059
1367-4803
10.1093/bioinformatics/btz153
2-s2.0-85072698779
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Bioinformatics
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 3873-3874
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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