Genome-wide association study for birth weight in Nellore cattle points to previously described orthologous genes affecting human and bovine height
Autor(a) principal: | |
---|---|
Data de Publicação: | 2013 |
Outros Autores: | , , , , , , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.1186/1471-2156-14-52 http://hdl.handle.net/11449/75650 |
Resumo: | Background: Birth weight (BW) is an economically important trait in beef cattle, and is associated with growth- and stature-related traits and calving difficulty. One region of the cattle genome, located on Bos primigenius taurus chromosome 14 (BTA14), has been previously shown to be associated with stature by multiple independent studies, and contains orthologous genes affecting human height. A genome-wide association study (GWAS) for BW in Brazilian Nellore cattle (Bos primigenius indicus) was performed using estimated breeding values (EBVs) of 654 progeny-tested bulls genotyped for over 777,000 single nucleotide polymorphisms (SNPs).Results: The most significant SNP (rs133012258, PGC = 1.34 × 10-9), located at BTA14:25376827, explained 4.62% of the variance in BW EBVs. The surrounding 1 Mb region presented high identity with human, pig and mouse autosomes 8, 4 and 4, respectively, and contains the orthologous height genes PLAG1, CHCHD7, MOS, RPS20, LYN, RDHE2 (SDR16C5) and PENK. The region also overlapped 28 quantitative trait loci (QTLs) previously reported in literature by linkage mapping studies in cattle, including QTLs for birth weight, mature height, carcass weight, stature, pre-weaning average daily gain, calving ease, and gestation length.Conclusions: This study presents the first GWAS applying a high-density SNP panel to identify putative chromosome regions affecting birth weight in Nellore cattle. These results suggest that the QTLs on BTA14 associated with body size in taurine cattle (Bos primigenius taurus) also affect birth weight and size in zebu cattle (Bos primigenius indicus). © 2013 Utsunomiya et al.; licensee BioMed Central Ltd. |
id |
UNSP_14ea33667de2ad3c8b9124c0f1676c4e |
---|---|
oai_identifier_str |
oai:repositorio.unesp.br:11449/75650 |
network_acronym_str |
UNSP |
network_name_str |
Repositório Institucional da UNESP |
repository_id_str |
2946 |
spelling |
Genome-wide association study for birth weight in Nellore cattle points to previously described orthologous genes affecting human and bovine heightBirth weightBos primigenius indicusGWASNellore cattleStatureCHCHD7 proteinMOS proteinPENK proteinPLAG1 proteinprotein kinase Lynprotein tyrosine kinaseRDHE2 proteinRPS20 proteinSDR16C5 proteinunclassified druganimal experimentanimal tissueautosomebirth weightbody heightBos taurusbreedingcarcasscattlechromosome NORcontrolled studygene expressiongene locationgene mappinggenetic associationgenetic linkagegenotypegestational agenonhumanorthologyprogenyquantitative trait locussingle nucleotide polymorphismswineweaningweight gainBosBos indicusBovinaeSuidaeBackground: Birth weight (BW) is an economically important trait in beef cattle, and is associated with growth- and stature-related traits and calving difficulty. One region of the cattle genome, located on Bos primigenius taurus chromosome 14 (BTA14), has been previously shown to be associated with stature by multiple independent studies, and contains orthologous genes affecting human height. A genome-wide association study (GWAS) for BW in Brazilian Nellore cattle (Bos primigenius indicus) was performed using estimated breeding values (EBVs) of 654 progeny-tested bulls genotyped for over 777,000 single nucleotide polymorphisms (SNPs).Results: The most significant SNP (rs133012258, PGC = 1.34 × 10-9), located at BTA14:25376827, explained 4.62% of the variance in BW EBVs. The surrounding 1 Mb region presented high identity with human, pig and mouse autosomes 8, 4 and 4, respectively, and contains the orthologous height genes PLAG1, CHCHD7, MOS, RPS20, LYN, RDHE2 (SDR16C5) and PENK. The region also overlapped 28 quantitative trait loci (QTLs) previously reported in literature by linkage mapping studies in cattle, including QTLs for birth weight, mature height, carcass weight, stature, pre-weaning average daily gain, calving ease, and gestation length.Conclusions: This study presents the first GWAS applying a high-density SNP panel to identify putative chromosome regions affecting birth weight in Nellore cattle. These results suggest that the QTLs on BTA14 associated with body size in taurine cattle (Bos primigenius taurus) also affect birth weight and size in zebu cattle (Bos primigenius indicus). © 2013 Utsunomiya et al.; licensee BioMed Central Ltd.Faculdade de Ciências Agrárias e Veterinárias Universidade Estadual Paulista (UNESP), Jaboticabal, São Paulo 14884-900GenSys Consultores Associados, Porto Alegre 90680-000Department of Sustainable Agricultural Systems Division of Livestock Sciences BOKU - University of Natural Resources and Life Sciences, ViennaCentre for Reproduction and Genomics AgResearch, Invermay, MosgielARS-USDA - Agricultural Research Service United States Department of Agriculture Animal Improvement Programs Laboratory, Beltsville, MD 20705United States Department of Agriculture Agricultural Research Service Bovine Functional Genomics Laboratory, Beltsville, MD 20705Centre for Genetic Improvement of Livestock University of Guelph, Guelph, ON N1G2W1Bioinformatics and Animal Genomics Laboratory Embrapa Dairy Cattle, Juiz de Fora, Minas GeraisSchool of Veterinary Sciences University of Queensland, Gatton, Qld 4343School of Rural and Environmental Science University of New England, Armidale, NSW 2351Faculdade de Medicina Veterinária de Araçatuba UNESP - Univ. Estadual Paulista, Araçatuba, São Paulo 16050-680Faculdade de Ciências Agrárias e Veterinárias Universidade Estadual Paulista (UNESP), Jaboticabal, São Paulo 14884-900Faculdade de Medicina Veterinária de Araçatuba UNESP - Univ. Estadual Paulista, Araçatuba, São Paulo 16050-680Universidade Estadual Paulista (Unesp)GenSys Consultores AssociadosBOKU - University of Natural Resources and Life SciencesAgResearchAnimal Improvement Programs LaboratoryBovine Functional Genomics LaboratoryUniversity of GuelphEmpresa Brasileira de Pesquisa Agropecuária (EMBRAPA)University of QueenslandUniversity of New EnglandUtsunomiya, Yuri T. [UNESP]do Carmo, Adriana S. [UNESP]Carvalheiro, RobertoNeves, Haroldo H.R. [UNESP]Matos, Márcia C. [UNESP]Zavarez, Ludmilla B. [UNESP]Pérez O'Brien, Ana M.Sölkner, JohannMcEwan, John C.Cole, John B.Van Tassell, Curtis P.Schenkel, Flávio S.da Silva, Marcos V.G.B.Porto Neto, Laercio R.Sonstegard, Tad S.Garcia, José Fernando [UNESP]2014-05-27T11:29:40Z2014-05-27T11:29:40Z2013-06-13info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://dx.doi.org/10.1186/1471-2156-14-52BMC Genetics, v. 14.1471-2156http://hdl.handle.net/11449/7565010.1186/1471-2156-14-52WOS:0003203749000012-s2.0-848788170652-s2.0-84878817065.pdf9991374083045897Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengBMC Genetics2.4691,160info:eu-repo/semantics/openAccess2024-09-04T19:15:11Zoai:repositorio.unesp.br:11449/75650Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestrepositoriounesp@unesp.bropendoar:29462024-09-04T19:15:11Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Genome-wide association study for birth weight in Nellore cattle points to previously described orthologous genes affecting human and bovine height |
title |
Genome-wide association study for birth weight in Nellore cattle points to previously described orthologous genes affecting human and bovine height |
spellingShingle |
Genome-wide association study for birth weight in Nellore cattle points to previously described orthologous genes affecting human and bovine height Utsunomiya, Yuri T. [UNESP] Birth weight Bos primigenius indicus GWAS Nellore cattle Stature CHCHD7 protein MOS protein PENK protein PLAG1 protein protein kinase Lyn protein tyrosine kinase RDHE2 protein RPS20 protein SDR16C5 protein unclassified drug animal experiment animal tissue autosome birth weight body height Bos taurus breeding carcass cattle chromosome NOR controlled study gene expression gene location gene mapping genetic association genetic linkage genotype gestational age nonhuman orthology progeny quantitative trait locus single nucleotide polymorphism swine weaning weight gain Bos Bos indicus Bovinae Suidae |
title_short |
Genome-wide association study for birth weight in Nellore cattle points to previously described orthologous genes affecting human and bovine height |
title_full |
Genome-wide association study for birth weight in Nellore cattle points to previously described orthologous genes affecting human and bovine height |
title_fullStr |
Genome-wide association study for birth weight in Nellore cattle points to previously described orthologous genes affecting human and bovine height |
title_full_unstemmed |
Genome-wide association study for birth weight in Nellore cattle points to previously described orthologous genes affecting human and bovine height |
title_sort |
Genome-wide association study for birth weight in Nellore cattle points to previously described orthologous genes affecting human and bovine height |
author |
Utsunomiya, Yuri T. [UNESP] |
author_facet |
Utsunomiya, Yuri T. [UNESP] do Carmo, Adriana S. [UNESP] Carvalheiro, Roberto Neves, Haroldo H.R. [UNESP] Matos, Márcia C. [UNESP] Zavarez, Ludmilla B. [UNESP] Pérez O'Brien, Ana M. Sölkner, Johann McEwan, John C. Cole, John B. Van Tassell, Curtis P. Schenkel, Flávio S. da Silva, Marcos V.G.B. Porto Neto, Laercio R. Sonstegard, Tad S. Garcia, José Fernando [UNESP] |
author_role |
author |
author2 |
do Carmo, Adriana S. [UNESP] Carvalheiro, Roberto Neves, Haroldo H.R. [UNESP] Matos, Márcia C. [UNESP] Zavarez, Ludmilla B. [UNESP] Pérez O'Brien, Ana M. Sölkner, Johann McEwan, John C. Cole, John B. Van Tassell, Curtis P. Schenkel, Flávio S. da Silva, Marcos V.G.B. Porto Neto, Laercio R. Sonstegard, Tad S. Garcia, José Fernando [UNESP] |
author2_role |
author author author author author author author author author author author author author author author |
dc.contributor.none.fl_str_mv |
Universidade Estadual Paulista (Unesp) GenSys Consultores Associados BOKU - University of Natural Resources and Life Sciences AgResearch Animal Improvement Programs Laboratory Bovine Functional Genomics Laboratory University of Guelph Empresa Brasileira de Pesquisa Agropecuária (EMBRAPA) University of Queensland University of New England |
dc.contributor.author.fl_str_mv |
Utsunomiya, Yuri T. [UNESP] do Carmo, Adriana S. [UNESP] Carvalheiro, Roberto Neves, Haroldo H.R. [UNESP] Matos, Márcia C. [UNESP] Zavarez, Ludmilla B. [UNESP] Pérez O'Brien, Ana M. Sölkner, Johann McEwan, John C. Cole, John B. Van Tassell, Curtis P. Schenkel, Flávio S. da Silva, Marcos V.G.B. Porto Neto, Laercio R. Sonstegard, Tad S. Garcia, José Fernando [UNESP] |
dc.subject.por.fl_str_mv |
Birth weight Bos primigenius indicus GWAS Nellore cattle Stature CHCHD7 protein MOS protein PENK protein PLAG1 protein protein kinase Lyn protein tyrosine kinase RDHE2 protein RPS20 protein SDR16C5 protein unclassified drug animal experiment animal tissue autosome birth weight body height Bos taurus breeding carcass cattle chromosome NOR controlled study gene expression gene location gene mapping genetic association genetic linkage genotype gestational age nonhuman orthology progeny quantitative trait locus single nucleotide polymorphism swine weaning weight gain Bos Bos indicus Bovinae Suidae |
topic |
Birth weight Bos primigenius indicus GWAS Nellore cattle Stature CHCHD7 protein MOS protein PENK protein PLAG1 protein protein kinase Lyn protein tyrosine kinase RDHE2 protein RPS20 protein SDR16C5 protein unclassified drug animal experiment animal tissue autosome birth weight body height Bos taurus breeding carcass cattle chromosome NOR controlled study gene expression gene location gene mapping genetic association genetic linkage genotype gestational age nonhuman orthology progeny quantitative trait locus single nucleotide polymorphism swine weaning weight gain Bos Bos indicus Bovinae Suidae |
description |
Background: Birth weight (BW) is an economically important trait in beef cattle, and is associated with growth- and stature-related traits and calving difficulty. One region of the cattle genome, located on Bos primigenius taurus chromosome 14 (BTA14), has been previously shown to be associated with stature by multiple independent studies, and contains orthologous genes affecting human height. A genome-wide association study (GWAS) for BW in Brazilian Nellore cattle (Bos primigenius indicus) was performed using estimated breeding values (EBVs) of 654 progeny-tested bulls genotyped for over 777,000 single nucleotide polymorphisms (SNPs).Results: The most significant SNP (rs133012258, PGC = 1.34 × 10-9), located at BTA14:25376827, explained 4.62% of the variance in BW EBVs. The surrounding 1 Mb region presented high identity with human, pig and mouse autosomes 8, 4 and 4, respectively, and contains the orthologous height genes PLAG1, CHCHD7, MOS, RPS20, LYN, RDHE2 (SDR16C5) and PENK. The region also overlapped 28 quantitative trait loci (QTLs) previously reported in literature by linkage mapping studies in cattle, including QTLs for birth weight, mature height, carcass weight, stature, pre-weaning average daily gain, calving ease, and gestation length.Conclusions: This study presents the first GWAS applying a high-density SNP panel to identify putative chromosome regions affecting birth weight in Nellore cattle. These results suggest that the QTLs on BTA14 associated with body size in taurine cattle (Bos primigenius taurus) also affect birth weight and size in zebu cattle (Bos primigenius indicus). © 2013 Utsunomiya et al.; licensee BioMed Central Ltd. |
publishDate |
2013 |
dc.date.none.fl_str_mv |
2013-06-13 2014-05-27T11:29:40Z 2014-05-27T11:29:40Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1186/1471-2156-14-52 BMC Genetics, v. 14. 1471-2156 http://hdl.handle.net/11449/75650 10.1186/1471-2156-14-52 WOS:000320374900001 2-s2.0-84878817065 2-s2.0-84878817065.pdf 9991374083045897 |
url |
http://dx.doi.org/10.1186/1471-2156-14-52 http://hdl.handle.net/11449/75650 |
identifier_str_mv |
BMC Genetics, v. 14. 1471-2156 10.1186/1471-2156-14-52 WOS:000320374900001 2-s2.0-84878817065 2-s2.0-84878817065.pdf 9991374083045897 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
BMC Genetics 2.469 1,160 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.source.none.fl_str_mv |
Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
repositoriounesp@unesp.br |
_version_ |
1810021371185463296 |