Phylogeny of the genus Hypophthalmus Cuvier, 1829 (Pimelodidae – Siluriformes), based on a multilocus analysis, indicates diversification and introgression in the Amazon basin

Detalhes bibliográficos
Autor(a) principal: Santos, Julya Caroline Mesquita dos
Data de Publicação: 2019
Outros Autores: Ferreira, Edinaldo Silva, Oliveira, Claudio [UNESP], Oliveira, Tamyres Barbosa, Costa, Antonia Silvia Lima da, de Queiroz, Anna Karolina Oliveira, Schneider, Horacio, Sampaio, Iracilda, Santos, Simoni
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1016/j.ympev.2019.05.017
http://hdl.handle.net/11449/187694
Resumo: The genus Hypophthalmus encompasses four valid South American freshwater catfish species: H. marginatus, H. edentatus, H. fimbriatus, and H. oremaculatus. More recently two new species were proposed Hypophthalmus n. sp. 1 and Hypophthalmus n. sp. 2. While Hypophthalmus species are a fundamentally important resource for the commercial fisheries that operate in the continental waters of the Amazon basin, their phylogenetic relationships and the true diversity of the genus have yet to be defined conclusively. Given this, the present study analyzed sequences of the mitochondrial COI gene and four nuclear markers (RAG2, Myh6, Plagl2 and Glyt) to evaluate the phylogenetic relationships and the diversity of the species of this genus. All the analyses showed that Hypophthalmus is monophyletic, and the species delimitation tests recovered all the Hypophthalmus taxa as distinct species. The putative new species Hypophthalmus n. sp. 1 and Hypophthalmus n. sp. 2 presented mean genetic divergence similar to or greater than that observed between valid Hypophthalmus taxa. All the analyses showed that H. oremaculatus is the sister group of H. n. sp. 1, which together group with H. fimbriatus. This clade is the sister group of the clade containing H. edentatus and H. n. sp. 2. One specimen, morphologically identified as H. oremaculatus, presented the nuclear genome of this species and the mitochondrial genome of H. n. sp. 1; while another specimen, morphologically identified as H. n. sp. 2, presented the nuclear Myh6 of H. n. sp. 2 and the mitochondrial and RAG2 genome of H. edentatus. These results indicate that hybridization and introgression has occurred between species in Hypophthalmus. The findings of this study indicate that the diversity of the Hypophthalmus is underestimated, emphasize the need for a taxonomic review of the genus, and a more systematic evaluation of the hybridization patterns found, to understanding the role of hybridization and introgression in the evolution of the genus.
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spelling Phylogeny of the genus Hypophthalmus Cuvier, 1829 (Pimelodidae – Siluriformes), based on a multilocus analysis, indicates diversification and introgression in the Amazon basinDiversificationHypophthalmusIntrogressionMitochondrial DNANuclear DNAPhylogenyThe genus Hypophthalmus encompasses four valid South American freshwater catfish species: H. marginatus, H. edentatus, H. fimbriatus, and H. oremaculatus. More recently two new species were proposed Hypophthalmus n. sp. 1 and Hypophthalmus n. sp. 2. While Hypophthalmus species are a fundamentally important resource for the commercial fisheries that operate in the continental waters of the Amazon basin, their phylogenetic relationships and the true diversity of the genus have yet to be defined conclusively. Given this, the present study analyzed sequences of the mitochondrial COI gene and four nuclear markers (RAG2, Myh6, Plagl2 and Glyt) to evaluate the phylogenetic relationships and the diversity of the species of this genus. All the analyses showed that Hypophthalmus is monophyletic, and the species delimitation tests recovered all the Hypophthalmus taxa as distinct species. The putative new species Hypophthalmus n. sp. 1 and Hypophthalmus n. sp. 2 presented mean genetic divergence similar to or greater than that observed between valid Hypophthalmus taxa. All the analyses showed that H. oremaculatus is the sister group of H. n. sp. 1, which together group with H. fimbriatus. This clade is the sister group of the clade containing H. edentatus and H. n. sp. 2. One specimen, morphologically identified as H. oremaculatus, presented the nuclear genome of this species and the mitochondrial genome of H. n. sp. 1; while another specimen, morphologically identified as H. n. sp. 2, presented the nuclear Myh6 of H. n. sp. 2 and the mitochondrial and RAG2 genome of H. edentatus. These results indicate that hybridization and introgression has occurred between species in Hypophthalmus. The findings of this study indicate that the diversity of the Hypophthalmus is underestimated, emphasize the need for a taxonomic review of the genus, and a more systematic evaluation of the hybridization patterns found, to understanding the role of hybridization and introgression in the evolution of the genus.Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Laboratório de Microbiologia do Pescado Universidade Federal do Pará Instituto de Estudos Costeiros, Alameda Leandro Ribeiro, s/n, AldeiaInstituto Federal de Educação Ciência e Tecnologia do Pará (IFPA), Av. dos Bragançanos, s/n – Vila SinháDepartamento de Morfologia Instituto de Biociências Universidade Estadual Paulista (UNESP), Rua Professor Doutor Antônio Celso Wagner Zanin, s/nLaboratório de Genética e Biologia Molecular Universidade Federal do Pará Instituto de Estudos Costeiros, Alameda Leandro Ribeiro, s/n, AldeiaDepartamento de Morfologia Instituto de Biociências Universidade Estadual Paulista (UNESP), Rua Professor Doutor Antônio Celso Wagner Zanin, s/nCAPES: 001CNPq: 482601/2013Universidade Federal do Pará (UFPA)Ciência e Tecnologia do Pará (IFPA)Universidade Estadual Paulista (Unesp)Santos, Julya Caroline Mesquita dosFerreira, Edinaldo SilvaOliveira, Claudio [UNESP]Oliveira, Tamyres BarbosaCosta, Antonia Silvia Lima dade Queiroz, Anna Karolina OliveiraSchneider, HoracioSampaio, IracildaSantos, Simoni2019-10-06T15:44:26Z2019-10-06T15:44:26Z2019-08-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article285-292http://dx.doi.org/10.1016/j.ympev.2019.05.017Molecular Phylogenetics and Evolution, v. 137, p. 285-292.1095-95131055-7903http://hdl.handle.net/11449/18769410.1016/j.ympev.2019.05.0172-s2.0-85066124921Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengMolecular Phylogenetics and Evolutioninfo:eu-repo/semantics/openAccess2021-10-22T18:56:48Zoai:repositorio.unesp.br:11449/187694Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462021-10-22T18:56:48Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Phylogeny of the genus Hypophthalmus Cuvier, 1829 (Pimelodidae – Siluriformes), based on a multilocus analysis, indicates diversification and introgression in the Amazon basin
title Phylogeny of the genus Hypophthalmus Cuvier, 1829 (Pimelodidae – Siluriformes), based on a multilocus analysis, indicates diversification and introgression in the Amazon basin
spellingShingle Phylogeny of the genus Hypophthalmus Cuvier, 1829 (Pimelodidae – Siluriformes), based on a multilocus analysis, indicates diversification and introgression in the Amazon basin
Santos, Julya Caroline Mesquita dos
Diversification
Hypophthalmus
Introgression
Mitochondrial DNA
Nuclear DNA
Phylogeny
title_short Phylogeny of the genus Hypophthalmus Cuvier, 1829 (Pimelodidae – Siluriformes), based on a multilocus analysis, indicates diversification and introgression in the Amazon basin
title_full Phylogeny of the genus Hypophthalmus Cuvier, 1829 (Pimelodidae – Siluriformes), based on a multilocus analysis, indicates diversification and introgression in the Amazon basin
title_fullStr Phylogeny of the genus Hypophthalmus Cuvier, 1829 (Pimelodidae – Siluriformes), based on a multilocus analysis, indicates diversification and introgression in the Amazon basin
title_full_unstemmed Phylogeny of the genus Hypophthalmus Cuvier, 1829 (Pimelodidae – Siluriformes), based on a multilocus analysis, indicates diversification and introgression in the Amazon basin
title_sort Phylogeny of the genus Hypophthalmus Cuvier, 1829 (Pimelodidae – Siluriformes), based on a multilocus analysis, indicates diversification and introgression in the Amazon basin
author Santos, Julya Caroline Mesquita dos
author_facet Santos, Julya Caroline Mesquita dos
Ferreira, Edinaldo Silva
Oliveira, Claudio [UNESP]
Oliveira, Tamyres Barbosa
Costa, Antonia Silvia Lima da
de Queiroz, Anna Karolina Oliveira
Schneider, Horacio
Sampaio, Iracilda
Santos, Simoni
author_role author
author2 Ferreira, Edinaldo Silva
Oliveira, Claudio [UNESP]
Oliveira, Tamyres Barbosa
Costa, Antonia Silvia Lima da
de Queiroz, Anna Karolina Oliveira
Schneider, Horacio
Sampaio, Iracilda
Santos, Simoni
author2_role author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Federal do Pará (UFPA)
Ciência e Tecnologia do Pará (IFPA)
Universidade Estadual Paulista (Unesp)
dc.contributor.author.fl_str_mv Santos, Julya Caroline Mesquita dos
Ferreira, Edinaldo Silva
Oliveira, Claudio [UNESP]
Oliveira, Tamyres Barbosa
Costa, Antonia Silvia Lima da
de Queiroz, Anna Karolina Oliveira
Schneider, Horacio
Sampaio, Iracilda
Santos, Simoni
dc.subject.por.fl_str_mv Diversification
Hypophthalmus
Introgression
Mitochondrial DNA
Nuclear DNA
Phylogeny
topic Diversification
Hypophthalmus
Introgression
Mitochondrial DNA
Nuclear DNA
Phylogeny
description The genus Hypophthalmus encompasses four valid South American freshwater catfish species: H. marginatus, H. edentatus, H. fimbriatus, and H. oremaculatus. More recently two new species were proposed Hypophthalmus n. sp. 1 and Hypophthalmus n. sp. 2. While Hypophthalmus species are a fundamentally important resource for the commercial fisheries that operate in the continental waters of the Amazon basin, their phylogenetic relationships and the true diversity of the genus have yet to be defined conclusively. Given this, the present study analyzed sequences of the mitochondrial COI gene and four nuclear markers (RAG2, Myh6, Plagl2 and Glyt) to evaluate the phylogenetic relationships and the diversity of the species of this genus. All the analyses showed that Hypophthalmus is monophyletic, and the species delimitation tests recovered all the Hypophthalmus taxa as distinct species. The putative new species Hypophthalmus n. sp. 1 and Hypophthalmus n. sp. 2 presented mean genetic divergence similar to or greater than that observed between valid Hypophthalmus taxa. All the analyses showed that H. oremaculatus is the sister group of H. n. sp. 1, which together group with H. fimbriatus. This clade is the sister group of the clade containing H. edentatus and H. n. sp. 2. One specimen, morphologically identified as H. oremaculatus, presented the nuclear genome of this species and the mitochondrial genome of H. n. sp. 1; while another specimen, morphologically identified as H. n. sp. 2, presented the nuclear Myh6 of H. n. sp. 2 and the mitochondrial and RAG2 genome of H. edentatus. These results indicate that hybridization and introgression has occurred between species in Hypophthalmus. The findings of this study indicate that the diversity of the Hypophthalmus is underestimated, emphasize the need for a taxonomic review of the genus, and a more systematic evaluation of the hybridization patterns found, to understanding the role of hybridization and introgression in the evolution of the genus.
publishDate 2019
dc.date.none.fl_str_mv 2019-10-06T15:44:26Z
2019-10-06T15:44:26Z
2019-08-01
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1016/j.ympev.2019.05.017
Molecular Phylogenetics and Evolution, v. 137, p. 285-292.
1095-9513
1055-7903
http://hdl.handle.net/11449/187694
10.1016/j.ympev.2019.05.017
2-s2.0-85066124921
url http://dx.doi.org/10.1016/j.ympev.2019.05.017
http://hdl.handle.net/11449/187694
identifier_str_mv Molecular Phylogenetics and Evolution, v. 137, p. 285-292.
1095-9513
1055-7903
10.1016/j.ympev.2019.05.017
2-s2.0-85066124921
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Molecular Phylogenetics and Evolution
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 285-292
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
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