Comparison of generational effect on proteins and metabolites in non-transgenic and transgenic soybean seeds through the insertion of the cp4-EPSPS gene assessed by omics-based platforms
Autor(a) principal: | |
---|---|
Data de Publicação: | 2020 |
Outros Autores: | , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.1016/j.ecoenv.2020.110918 http://hdl.handle.net/11449/200712 |
Resumo: | This work evaluates different generations of transgenic (cp4-EPSPS gene) and non-transgenic soybean plants through proteomics and metabolomics. For proteomics purpose, 24 differentially abundant protein spots were found through 2-D DIGE, being 4 belonging to transgenic plants. From this total, 19 were successfully identified, storage proteins as predominant class. Some identified proteins are involved in growing and cell division, and stress response, such as LEA and dehydrin. For metabolomics, 17 compounds were putatively annotated, mainly belonging to the secondary metabolism, such as flavonoids. From these analyzes, all generations and varieties of the soybean are prone to be differentiate by PLS-DA. According to our results, transgenic plants appear to be more stable than non-transgenic ones. In addition, the omics-based approaches allowed access some relations between those differential spot proteins and metabolites, mainly those storage proteins and flavonoid. |
id |
UNSP_1cff648f47288781c20ebda6b4be934e |
---|---|
oai_identifier_str |
oai:repositorio.unesp.br:11449/200712 |
network_acronym_str |
UNSP |
network_name_str |
Repositório Institucional da UNESP |
repository_id_str |
2946 |
spelling |
Comparison of generational effect on proteins and metabolites in non-transgenic and transgenic soybean seeds through the insertion of the cp4-EPSPS gene assessed by omics-based platformsGenerational effectMass spectrometryMetaboliteProteinSoybeanTransgenicThis work evaluates different generations of transgenic (cp4-EPSPS gene) and non-transgenic soybean plants through proteomics and metabolomics. For proteomics purpose, 24 differentially abundant protein spots were found through 2-D DIGE, being 4 belonging to transgenic plants. From this total, 19 were successfully identified, storage proteins as predominant class. Some identified proteins are involved in growing and cell division, and stress response, such as LEA and dehydrin. For metabolomics, 17 compounds were putatively annotated, mainly belonging to the secondary metabolism, such as flavonoids. From these analyzes, all generations and varieties of the soybean are prone to be differentiate by PLS-DA. According to our results, transgenic plants appear to be more stable than non-transgenic ones. In addition, the omics-based approaches allowed access some relations between those differential spot proteins and metabolites, mainly those storage proteins and flavonoid.Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Spectrometry Sample Preparation and Mechanization Group – GEPAM Institute of Chemistry University of Campinas – UNICAMP, P.O. Box 6154National Institute of Science and Technology for Bioanalytics Institute of Chemistry University of Campinas – UNICAMP, P.O. Box 6154Department of Technology School of Agricultural and Veterinary Studies State University “Júlio de Mesquita Filho”- UNESP - JaboticabalDepartment of Organic Chemistry Institute of Chemistry University of Campinas – UNICAMP, P.O. Box 6154London Institute of Medical Sciences Faculty of Medicine Imperial College London UK Research and InnovationDepartment of Technology School of Agricultural and Veterinary Studies State University “Júlio de Mesquita Filho”- UNESP - JaboticabalFAPESP: 2013/15646-3FAPESP: 2013/17514-7FAPESP: 2016/07384-7FAPESP: 2018/25207-0CNPq: 401170/2016-0Universidade Estadual de Campinas (UNICAMP)Universidade Estadual Paulista (Unesp)UK Research and Innovationde Campos, Bruna K.Galazzi, Rodrigo M.dos Santos, Bruna M. [UNESP]Balbuena, Tiago S. [UNESP]dos Santos, Fábio N.Mokochinski, João B.Eberlin, Marcos N.Arruda, Marco A.Z.2020-12-12T02:14:01Z2020-12-12T02:14:01Z2020-10-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1016/j.ecoenv.2020.110918Ecotoxicology and Environmental Safety, v. 202.1090-24140147-6513http://hdl.handle.net/11449/20071210.1016/j.ecoenv.2020.1109182-s2.0-85087504012Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengEcotoxicology and Environmental Safetyinfo:eu-repo/semantics/openAccess2024-06-07T15:32:11Zoai:repositorio.unesp.br:11449/200712Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T19:48:46.797615Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Comparison of generational effect on proteins and metabolites in non-transgenic and transgenic soybean seeds through the insertion of the cp4-EPSPS gene assessed by omics-based platforms |
title |
Comparison of generational effect on proteins and metabolites in non-transgenic and transgenic soybean seeds through the insertion of the cp4-EPSPS gene assessed by omics-based platforms |
spellingShingle |
Comparison of generational effect on proteins and metabolites in non-transgenic and transgenic soybean seeds through the insertion of the cp4-EPSPS gene assessed by omics-based platforms de Campos, Bruna K. Generational effect Mass spectrometry Metabolite Protein Soybean Transgenic |
title_short |
Comparison of generational effect on proteins and metabolites in non-transgenic and transgenic soybean seeds through the insertion of the cp4-EPSPS gene assessed by omics-based platforms |
title_full |
Comparison of generational effect on proteins and metabolites in non-transgenic and transgenic soybean seeds through the insertion of the cp4-EPSPS gene assessed by omics-based platforms |
title_fullStr |
Comparison of generational effect on proteins and metabolites in non-transgenic and transgenic soybean seeds through the insertion of the cp4-EPSPS gene assessed by omics-based platforms |
title_full_unstemmed |
Comparison of generational effect on proteins and metabolites in non-transgenic and transgenic soybean seeds through the insertion of the cp4-EPSPS gene assessed by omics-based platforms |
title_sort |
Comparison of generational effect on proteins and metabolites in non-transgenic and transgenic soybean seeds through the insertion of the cp4-EPSPS gene assessed by omics-based platforms |
author |
de Campos, Bruna K. |
author_facet |
de Campos, Bruna K. Galazzi, Rodrigo M. dos Santos, Bruna M. [UNESP] Balbuena, Tiago S. [UNESP] dos Santos, Fábio N. Mokochinski, João B. Eberlin, Marcos N. Arruda, Marco A.Z. |
author_role |
author |
author2 |
Galazzi, Rodrigo M. dos Santos, Bruna M. [UNESP] Balbuena, Tiago S. [UNESP] dos Santos, Fábio N. Mokochinski, João B. Eberlin, Marcos N. Arruda, Marco A.Z. |
author2_role |
author author author author author author author |
dc.contributor.none.fl_str_mv |
Universidade Estadual de Campinas (UNICAMP) Universidade Estadual Paulista (Unesp) UK Research and Innovation |
dc.contributor.author.fl_str_mv |
de Campos, Bruna K. Galazzi, Rodrigo M. dos Santos, Bruna M. [UNESP] Balbuena, Tiago S. [UNESP] dos Santos, Fábio N. Mokochinski, João B. Eberlin, Marcos N. Arruda, Marco A.Z. |
dc.subject.por.fl_str_mv |
Generational effect Mass spectrometry Metabolite Protein Soybean Transgenic |
topic |
Generational effect Mass spectrometry Metabolite Protein Soybean Transgenic |
description |
This work evaluates different generations of transgenic (cp4-EPSPS gene) and non-transgenic soybean plants through proteomics and metabolomics. For proteomics purpose, 24 differentially abundant protein spots were found through 2-D DIGE, being 4 belonging to transgenic plants. From this total, 19 were successfully identified, storage proteins as predominant class. Some identified proteins are involved in growing and cell division, and stress response, such as LEA and dehydrin. For metabolomics, 17 compounds were putatively annotated, mainly belonging to the secondary metabolism, such as flavonoids. From these analyzes, all generations and varieties of the soybean are prone to be differentiate by PLS-DA. According to our results, transgenic plants appear to be more stable than non-transgenic ones. In addition, the omics-based approaches allowed access some relations between those differential spot proteins and metabolites, mainly those storage proteins and flavonoid. |
publishDate |
2020 |
dc.date.none.fl_str_mv |
2020-12-12T02:14:01Z 2020-12-12T02:14:01Z 2020-10-01 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1016/j.ecoenv.2020.110918 Ecotoxicology and Environmental Safety, v. 202. 1090-2414 0147-6513 http://hdl.handle.net/11449/200712 10.1016/j.ecoenv.2020.110918 2-s2.0-85087504012 |
url |
http://dx.doi.org/10.1016/j.ecoenv.2020.110918 http://hdl.handle.net/11449/200712 |
identifier_str_mv |
Ecotoxicology and Environmental Safety, v. 202. 1090-2414 0147-6513 10.1016/j.ecoenv.2020.110918 2-s2.0-85087504012 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Ecotoxicology and Environmental Safety |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.source.none.fl_str_mv |
Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
|
_version_ |
1808129120881606656 |