De novo transcriptome assembly: a new laccase multigene family from the marine-derived basidiomycete Peniophora sp. CBMAI 1063

Detalhes bibliográficos
Autor(a) principal: Otero, Igor Vinicius Ramos [UNESP]
Data de Publicação: 2017
Outros Autores: Ferro, Milene [UNESP], Bacci, Maurício [UNESP], Ferreira, Henrique [UNESP], Sette, Lara Durães [UNESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1186/s13568-017-0526-7
http://hdl.handle.net/11449/175685
Resumo: Laccases are multicopper oxidases that are able to catalyze reactions involving a range of substrates, including phenols and amines, and this ability is related to the existence of different laccases. Basidiomycetes usually have more than one gene for laccase, but until now, this feature has not been demonstrated in a marine-derived fungus. Peniophora sp. CBMAI 1063 is a basidiomycete fungus isolated from a marine sponge that exhibits the ability to secrete significant amounts of laccase in saline conditions. In the present study, we identified laccase sequences from the transcriptome of Peniophora sp. CBMAI 1063 and used them to perform different molecular in silico analyses. The results revealed the presence of at least eight putative genes, which may encode ten different laccases with peptide lengths ranging from 482 to 588 aa and molecular weights ranging from 53.5 to 64.4 kDa. These laccases seem to perform extracellular activities, with the exception of one that may represent an intracellular laccase. The 10 predicted laccases expressed by Peniophora sp. CBMAI 1063 in laccase-induced media showed different patterns of N-glycosylation and isoelectric points and are divided into two classes based on the residue associated with the regulation of the redox potential of the enzyme. None of the predicted laccases showed more than 61% similarity to other fungal laccases. Based on the differences among the laccases expressed by Peniophora sp. CBMAI 1063, this marine-derived basidiomycete represents a valuable resource with strong potential for biotechnological exploitation.
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spelling De novo transcriptome assembly: a new laccase multigene family from the marine-derived basidiomycete Peniophora sp. CBMAI 1063LaccaseMarine-derived fungiMulticopper oxidaseTranscriptomeLaccases are multicopper oxidases that are able to catalyze reactions involving a range of substrates, including phenols and amines, and this ability is related to the existence of different laccases. Basidiomycetes usually have more than one gene for laccase, but until now, this feature has not been demonstrated in a marine-derived fungus. Peniophora sp. CBMAI 1063 is a basidiomycete fungus isolated from a marine sponge that exhibits the ability to secrete significant amounts of laccase in saline conditions. In the present study, we identified laccase sequences from the transcriptome of Peniophora sp. CBMAI 1063 and used them to perform different molecular in silico analyses. The results revealed the presence of at least eight putative genes, which may encode ten different laccases with peptide lengths ranging from 482 to 588 aa and molecular weights ranging from 53.5 to 64.4 kDa. These laccases seem to perform extracellular activities, with the exception of one that may represent an intracellular laccase. The 10 predicted laccases expressed by Peniophora sp. CBMAI 1063 in laccase-induced media showed different patterns of N-glycosylation and isoelectric points and are divided into two classes based on the residue associated with the regulation of the redox potential of the enzyme. None of the predicted laccases showed more than 61% similarity to other fungal laccases. Based on the differences among the laccases expressed by Peniophora sp. CBMAI 1063, this marine-derived basidiomycete represents a valuable resource with strong potential for biotechnological exploitation.Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Departamento de Bioquímica e Microbiologia Instituto de Biociências-IB Universidade Estadual Paulista Júlio de Mesquita Filho-UNESP, 24A, 1515Centro de Estudos de Insetos Sociais Instituto de Biociências Universidade Estadual Paulista Júlio de Mesquita FilhoDepartamento de Bioquímica e Microbiologia Instituto de Biociências-IB Universidade Estadual Paulista Júlio de Mesquita Filho-UNESP, 24A, 1515Centro de Estudos de Insetos Sociais Instituto de Biociências Universidade Estadual Paulista Júlio de Mesquita FilhoCNPq: 159488/2014-1FAPESP: 2013/19486-0FAPESP: 2014/17950-4FAPESP: 2016/07957-7Universidade Estadual Paulista (Unesp)Otero, Igor Vinicius Ramos [UNESP]Ferro, Milene [UNESP]Bacci, Maurício [UNESP]Ferreira, Henrique [UNESP]Sette, Lara Durães [UNESP]2018-12-11T17:17:04Z2018-12-11T17:17:04Z2017-12-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://dx.doi.org/10.1186/s13568-017-0526-7AMB Express, v. 7, n. 1, 2017.2191-0855http://hdl.handle.net/11449/17568510.1186/s13568-017-0526-72-s2.0-850390391472-s2.0-85039039147.pdf59696530982895755969653098289575Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengAMB Express0,574info:eu-repo/semantics/openAccess2024-04-11T14:57:01Zoai:repositorio.unesp.br:11449/175685Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestrepositoriounesp@unesp.bropendoar:29462024-04-11T14:57:01Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv De novo transcriptome assembly: a new laccase multigene family from the marine-derived basidiomycete Peniophora sp. CBMAI 1063
title De novo transcriptome assembly: a new laccase multigene family from the marine-derived basidiomycete Peniophora sp. CBMAI 1063
spellingShingle De novo transcriptome assembly: a new laccase multigene family from the marine-derived basidiomycete Peniophora sp. CBMAI 1063
Otero, Igor Vinicius Ramos [UNESP]
Laccase
Marine-derived fungi
Multicopper oxidase
Transcriptome
title_short De novo transcriptome assembly: a new laccase multigene family from the marine-derived basidiomycete Peniophora sp. CBMAI 1063
title_full De novo transcriptome assembly: a new laccase multigene family from the marine-derived basidiomycete Peniophora sp. CBMAI 1063
title_fullStr De novo transcriptome assembly: a new laccase multigene family from the marine-derived basidiomycete Peniophora sp. CBMAI 1063
title_full_unstemmed De novo transcriptome assembly: a new laccase multigene family from the marine-derived basidiomycete Peniophora sp. CBMAI 1063
title_sort De novo transcriptome assembly: a new laccase multigene family from the marine-derived basidiomycete Peniophora sp. CBMAI 1063
author Otero, Igor Vinicius Ramos [UNESP]
author_facet Otero, Igor Vinicius Ramos [UNESP]
Ferro, Milene [UNESP]
Bacci, Maurício [UNESP]
Ferreira, Henrique [UNESP]
Sette, Lara Durães [UNESP]
author_role author
author2 Ferro, Milene [UNESP]
Bacci, Maurício [UNESP]
Ferreira, Henrique [UNESP]
Sette, Lara Durães [UNESP]
author2_role author
author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (Unesp)
dc.contributor.author.fl_str_mv Otero, Igor Vinicius Ramos [UNESP]
Ferro, Milene [UNESP]
Bacci, Maurício [UNESP]
Ferreira, Henrique [UNESP]
Sette, Lara Durães [UNESP]
dc.subject.por.fl_str_mv Laccase
Marine-derived fungi
Multicopper oxidase
Transcriptome
topic Laccase
Marine-derived fungi
Multicopper oxidase
Transcriptome
description Laccases are multicopper oxidases that are able to catalyze reactions involving a range of substrates, including phenols and amines, and this ability is related to the existence of different laccases. Basidiomycetes usually have more than one gene for laccase, but until now, this feature has not been demonstrated in a marine-derived fungus. Peniophora sp. CBMAI 1063 is a basidiomycete fungus isolated from a marine sponge that exhibits the ability to secrete significant amounts of laccase in saline conditions. In the present study, we identified laccase sequences from the transcriptome of Peniophora sp. CBMAI 1063 and used them to perform different molecular in silico analyses. The results revealed the presence of at least eight putative genes, which may encode ten different laccases with peptide lengths ranging from 482 to 588 aa and molecular weights ranging from 53.5 to 64.4 kDa. These laccases seem to perform extracellular activities, with the exception of one that may represent an intracellular laccase. The 10 predicted laccases expressed by Peniophora sp. CBMAI 1063 in laccase-induced media showed different patterns of N-glycosylation and isoelectric points and are divided into two classes based on the residue associated with the regulation of the redox potential of the enzyme. None of the predicted laccases showed more than 61% similarity to other fungal laccases. Based on the differences among the laccases expressed by Peniophora sp. CBMAI 1063, this marine-derived basidiomycete represents a valuable resource with strong potential for biotechnological exploitation.
publishDate 2017
dc.date.none.fl_str_mv 2017-12-01
2018-12-11T17:17:04Z
2018-12-11T17:17:04Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1186/s13568-017-0526-7
AMB Express, v. 7, n. 1, 2017.
2191-0855
http://hdl.handle.net/11449/175685
10.1186/s13568-017-0526-7
2-s2.0-85039039147
2-s2.0-85039039147.pdf
5969653098289575
5969653098289575
url http://dx.doi.org/10.1186/s13568-017-0526-7
http://hdl.handle.net/11449/175685
identifier_str_mv AMB Express, v. 7, n. 1, 2017.
2191-0855
10.1186/s13568-017-0526-7
2-s2.0-85039039147
2-s2.0-85039039147.pdf
5969653098289575
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv AMB Express
0,574
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv repositoriounesp@unesp.br
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