De novo transcriptome assembly: a new laccase multigene family from the marine-derived basidiomycete Peniophora sp. CBMAI 1063
Autor(a) principal: | |
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Data de Publicação: | 2017 |
Outros Autores: | , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.1186/s13568-017-0526-7 http://hdl.handle.net/11449/175685 |
Resumo: | Laccases are multicopper oxidases that are able to catalyze reactions involving a range of substrates, including phenols and amines, and this ability is related to the existence of different laccases. Basidiomycetes usually have more than one gene for laccase, but until now, this feature has not been demonstrated in a marine-derived fungus. Peniophora sp. CBMAI 1063 is a basidiomycete fungus isolated from a marine sponge that exhibits the ability to secrete significant amounts of laccase in saline conditions. In the present study, we identified laccase sequences from the transcriptome of Peniophora sp. CBMAI 1063 and used them to perform different molecular in silico analyses. The results revealed the presence of at least eight putative genes, which may encode ten different laccases with peptide lengths ranging from 482 to 588 aa and molecular weights ranging from 53.5 to 64.4 kDa. These laccases seem to perform extracellular activities, with the exception of one that may represent an intracellular laccase. The 10 predicted laccases expressed by Peniophora sp. CBMAI 1063 in laccase-induced media showed different patterns of N-glycosylation and isoelectric points and are divided into two classes based on the residue associated with the regulation of the redox potential of the enzyme. None of the predicted laccases showed more than 61% similarity to other fungal laccases. Based on the differences among the laccases expressed by Peniophora sp. CBMAI 1063, this marine-derived basidiomycete represents a valuable resource with strong potential for biotechnological exploitation. |
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De novo transcriptome assembly: a new laccase multigene family from the marine-derived basidiomycete Peniophora sp. CBMAI 1063LaccaseMarine-derived fungiMulticopper oxidaseTranscriptomeLaccases are multicopper oxidases that are able to catalyze reactions involving a range of substrates, including phenols and amines, and this ability is related to the existence of different laccases. Basidiomycetes usually have more than one gene for laccase, but until now, this feature has not been demonstrated in a marine-derived fungus. Peniophora sp. CBMAI 1063 is a basidiomycete fungus isolated from a marine sponge that exhibits the ability to secrete significant amounts of laccase in saline conditions. In the present study, we identified laccase sequences from the transcriptome of Peniophora sp. CBMAI 1063 and used them to perform different molecular in silico analyses. The results revealed the presence of at least eight putative genes, which may encode ten different laccases with peptide lengths ranging from 482 to 588 aa and molecular weights ranging from 53.5 to 64.4 kDa. These laccases seem to perform extracellular activities, with the exception of one that may represent an intracellular laccase. The 10 predicted laccases expressed by Peniophora sp. CBMAI 1063 in laccase-induced media showed different patterns of N-glycosylation and isoelectric points and are divided into two classes based on the residue associated with the regulation of the redox potential of the enzyme. None of the predicted laccases showed more than 61% similarity to other fungal laccases. Based on the differences among the laccases expressed by Peniophora sp. CBMAI 1063, this marine-derived basidiomycete represents a valuable resource with strong potential for biotechnological exploitation.Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Departamento de Bioquímica e Microbiologia Instituto de Biociências-IB Universidade Estadual Paulista Júlio de Mesquita Filho-UNESP, 24A, 1515Centro de Estudos de Insetos Sociais Instituto de Biociências Universidade Estadual Paulista Júlio de Mesquita FilhoDepartamento de Bioquímica e Microbiologia Instituto de Biociências-IB Universidade Estadual Paulista Júlio de Mesquita Filho-UNESP, 24A, 1515Centro de Estudos de Insetos Sociais Instituto de Biociências Universidade Estadual Paulista Júlio de Mesquita FilhoCNPq: 159488/2014-1FAPESP: 2013/19486-0FAPESP: 2014/17950-4FAPESP: 2016/07957-7Universidade Estadual Paulista (Unesp)Otero, Igor Vinicius Ramos [UNESP]Ferro, Milene [UNESP]Bacci, Maurício [UNESP]Ferreira, Henrique [UNESP]Sette, Lara Durães [UNESP]2018-12-11T17:17:04Z2018-12-11T17:17:04Z2017-12-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://dx.doi.org/10.1186/s13568-017-0526-7AMB Express, v. 7, n. 1, 2017.2191-0855http://hdl.handle.net/11449/17568510.1186/s13568-017-0526-72-s2.0-850390391472-s2.0-85039039147.pdf59696530982895755969653098289575Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengAMB Express0,574info:eu-repo/semantics/openAccess2024-04-11T14:57:01Zoai:repositorio.unesp.br:11449/175685Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestrepositoriounesp@unesp.bropendoar:29462024-04-11T14:57:01Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
De novo transcriptome assembly: a new laccase multigene family from the marine-derived basidiomycete Peniophora sp. CBMAI 1063 |
title |
De novo transcriptome assembly: a new laccase multigene family from the marine-derived basidiomycete Peniophora sp. CBMAI 1063 |
spellingShingle |
De novo transcriptome assembly: a new laccase multigene family from the marine-derived basidiomycete Peniophora sp. CBMAI 1063 Otero, Igor Vinicius Ramos [UNESP] Laccase Marine-derived fungi Multicopper oxidase Transcriptome |
title_short |
De novo transcriptome assembly: a new laccase multigene family from the marine-derived basidiomycete Peniophora sp. CBMAI 1063 |
title_full |
De novo transcriptome assembly: a new laccase multigene family from the marine-derived basidiomycete Peniophora sp. CBMAI 1063 |
title_fullStr |
De novo transcriptome assembly: a new laccase multigene family from the marine-derived basidiomycete Peniophora sp. CBMAI 1063 |
title_full_unstemmed |
De novo transcriptome assembly: a new laccase multigene family from the marine-derived basidiomycete Peniophora sp. CBMAI 1063 |
title_sort |
De novo transcriptome assembly: a new laccase multigene family from the marine-derived basidiomycete Peniophora sp. CBMAI 1063 |
author |
Otero, Igor Vinicius Ramos [UNESP] |
author_facet |
Otero, Igor Vinicius Ramos [UNESP] Ferro, Milene [UNESP] Bacci, Maurício [UNESP] Ferreira, Henrique [UNESP] Sette, Lara Durães [UNESP] |
author_role |
author |
author2 |
Ferro, Milene [UNESP] Bacci, Maurício [UNESP] Ferreira, Henrique [UNESP] Sette, Lara Durães [UNESP] |
author2_role |
author author author author |
dc.contributor.none.fl_str_mv |
Universidade Estadual Paulista (Unesp) |
dc.contributor.author.fl_str_mv |
Otero, Igor Vinicius Ramos [UNESP] Ferro, Milene [UNESP] Bacci, Maurício [UNESP] Ferreira, Henrique [UNESP] Sette, Lara Durães [UNESP] |
dc.subject.por.fl_str_mv |
Laccase Marine-derived fungi Multicopper oxidase Transcriptome |
topic |
Laccase Marine-derived fungi Multicopper oxidase Transcriptome |
description |
Laccases are multicopper oxidases that are able to catalyze reactions involving a range of substrates, including phenols and amines, and this ability is related to the existence of different laccases. Basidiomycetes usually have more than one gene for laccase, but until now, this feature has not been demonstrated in a marine-derived fungus. Peniophora sp. CBMAI 1063 is a basidiomycete fungus isolated from a marine sponge that exhibits the ability to secrete significant amounts of laccase in saline conditions. In the present study, we identified laccase sequences from the transcriptome of Peniophora sp. CBMAI 1063 and used them to perform different molecular in silico analyses. The results revealed the presence of at least eight putative genes, which may encode ten different laccases with peptide lengths ranging from 482 to 588 aa and molecular weights ranging from 53.5 to 64.4 kDa. These laccases seem to perform extracellular activities, with the exception of one that may represent an intracellular laccase. The 10 predicted laccases expressed by Peniophora sp. CBMAI 1063 in laccase-induced media showed different patterns of N-glycosylation and isoelectric points and are divided into two classes based on the residue associated with the regulation of the redox potential of the enzyme. None of the predicted laccases showed more than 61% similarity to other fungal laccases. Based on the differences among the laccases expressed by Peniophora sp. CBMAI 1063, this marine-derived basidiomycete represents a valuable resource with strong potential for biotechnological exploitation. |
publishDate |
2017 |
dc.date.none.fl_str_mv |
2017-12-01 2018-12-11T17:17:04Z 2018-12-11T17:17:04Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1186/s13568-017-0526-7 AMB Express, v. 7, n. 1, 2017. 2191-0855 http://hdl.handle.net/11449/175685 10.1186/s13568-017-0526-7 2-s2.0-85039039147 2-s2.0-85039039147.pdf 5969653098289575 5969653098289575 |
url |
http://dx.doi.org/10.1186/s13568-017-0526-7 http://hdl.handle.net/11449/175685 |
identifier_str_mv |
AMB Express, v. 7, n. 1, 2017. 2191-0855 10.1186/s13568-017-0526-7 2-s2.0-85039039147 2-s2.0-85039039147.pdf 5969653098289575 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
AMB Express 0,574 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.source.none.fl_str_mv |
Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
repositoriounesp@unesp.br |
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1826303485266624512 |