Features based on the percolation theory for quantification of non-Hodgkin lymphomas
Autor(a) principal: | |
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Data de Publicação: | 2017 |
Outros Autores: | , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.1016/j.compbiomed.2017.10.012 http://hdl.handle.net/11449/175430 |
Resumo: | Non-Hodgkin lymphomas are a health problem that affects over 70,000 people per year in the United States alone. The early diagnosis and the identification of this lymphoma are essential for an effective treatment. The classification of non-Hodgkin lymphomas is a task that continues to rank as one of the main challenges faced by hematologists, pathologists, as well as in the producing of computer vision methods due to its inherent complexity. In this paper, we present a new method to quantify and classify tissue samples of non-Hodgkin lymphomas based on the percolation theory. The method consists of associating multiscale and multidimensional approaches in order to divide the image into smaller regions and then verifying color similarity between pixels. A cluster labeling algorithm was applied to each region of interest to obtain the values for the number of clusters, occurrence of percolation and coverage ratio of the largest cluster. The method was tested on different classifiers aiming to differentiate three different groups of non-Hodgkin lymphomas. The obtained results (AUC rates between 0.940 and 0.993) were compared to those provided by methods consolidated in the Literature, which indicates that the percolation theory is a suitable approach for identifying these three classes of non-Hodgkin lymphomas, those being: mantle cell lymphoma, follicular lymphoma and chronic lymphocytic leukemia. |
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Features based on the percolation theory for quantification of non-Hodgkin lymphomasFeaturesLymphomasMultidimensionalMultiscalePercolationNon-Hodgkin lymphomas are a health problem that affects over 70,000 people per year in the United States alone. The early diagnosis and the identification of this lymphoma are essential for an effective treatment. The classification of non-Hodgkin lymphomas is a task that continues to rank as one of the main challenges faced by hematologists, pathologists, as well as in the producing of computer vision methods due to its inherent complexity. In this paper, we present a new method to quantify and classify tissue samples of non-Hodgkin lymphomas based on the percolation theory. The method consists of associating multiscale and multidimensional approaches in order to divide the image into smaller regions and then verifying color similarity between pixels. A cluster labeling algorithm was applied to each region of interest to obtain the values for the number of clusters, occurrence of percolation and coverage ratio of the largest cluster. The method was tested on different classifiers aiming to differentiate three different groups of non-Hodgkin lymphomas. The obtained results (AUC rates between 0.940 and 0.993) were compared to those provided by methods consolidated in the Literature, which indicates that the percolation theory is a suitable approach for identifying these three classes of non-Hodgkin lymphomas, those being: mantle cell lymphoma, follicular lymphoma and chronic lymphocytic leukemia.Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)Fundação de Amparo à Pesquisa do Estado de Minas Gerais (FAPEMIG)Department of Computer Science and Statistics (DCCE) São Paulo State University (UNESP), R. Cristóvão Colombo, 2265Faculty of Computation (FACOM) - Federal University of Uberlândia (UFU), Av. João Neves de Ávila 2121, Bl.BCenter of Mathematics Computing and Cognition Federal University of ABC (UFABC), Av. dos Estados, 5001Federal Institute of Triangulo Mineiro (IFTM), R. Belarmino Vilela Junqueira S/NDepartment of Histology and Morphology Institute of Biomedical Science Federal University of Uberlândia (UFU), Av. Amazonas, S/NDepartment of Computer Science and Statistics (DCCE) São Paulo State University (UNESP), R. Cristóvão Colombo, 2265CAPES: 33004153073P9FAPEMIG: APQ-02885-15Universidade Estadual Paulista (Unesp)Universidade Federal de Uberlândia (UFU)Universidade Federal do ABC (UFABC)Federal Institute of Triangulo Mineiro (IFTM)Roberto, Guilherme F. [UNESP]Neves, Leandro A. [UNESP]Nascimento, Marcelo Z.Tosta, Thaína A.A.Longo, Leonardo C. [UNESP]Martins, Alessandro S.Faria, Paulo R.2018-12-11T17:15:47Z2018-12-11T17:15:47Z2017-12-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article135-147application/pdfhttp://dx.doi.org/10.1016/j.compbiomed.2017.10.012Computers in Biology and Medicine, v. 91, p. 135-147.1879-05340010-4825http://hdl.handle.net/11449/17543010.1016/j.compbiomed.2017.10.0122-s2.0-850328571952-s2.0-85032857195.pdfScopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengComputers in Biology and Medicine0,591info:eu-repo/semantics/openAccess2023-11-22T06:18:55Zoai:repositorio.unesp.br:11449/175430Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T18:27:44.976292Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Features based on the percolation theory for quantification of non-Hodgkin lymphomas |
title |
Features based on the percolation theory for quantification of non-Hodgkin lymphomas |
spellingShingle |
Features based on the percolation theory for quantification of non-Hodgkin lymphomas Roberto, Guilherme F. [UNESP] Features Lymphomas Multidimensional Multiscale Percolation |
title_short |
Features based on the percolation theory for quantification of non-Hodgkin lymphomas |
title_full |
Features based on the percolation theory for quantification of non-Hodgkin lymphomas |
title_fullStr |
Features based on the percolation theory for quantification of non-Hodgkin lymphomas |
title_full_unstemmed |
Features based on the percolation theory for quantification of non-Hodgkin lymphomas |
title_sort |
Features based on the percolation theory for quantification of non-Hodgkin lymphomas |
author |
Roberto, Guilherme F. [UNESP] |
author_facet |
Roberto, Guilherme F. [UNESP] Neves, Leandro A. [UNESP] Nascimento, Marcelo Z. Tosta, Thaína A.A. Longo, Leonardo C. [UNESP] Martins, Alessandro S. Faria, Paulo R. |
author_role |
author |
author2 |
Neves, Leandro A. [UNESP] Nascimento, Marcelo Z. Tosta, Thaína A.A. Longo, Leonardo C. [UNESP] Martins, Alessandro S. Faria, Paulo R. |
author2_role |
author author author author author author |
dc.contributor.none.fl_str_mv |
Universidade Estadual Paulista (Unesp) Universidade Federal de Uberlândia (UFU) Universidade Federal do ABC (UFABC) Federal Institute of Triangulo Mineiro (IFTM) |
dc.contributor.author.fl_str_mv |
Roberto, Guilherme F. [UNESP] Neves, Leandro A. [UNESP] Nascimento, Marcelo Z. Tosta, Thaína A.A. Longo, Leonardo C. [UNESP] Martins, Alessandro S. Faria, Paulo R. |
dc.subject.por.fl_str_mv |
Features Lymphomas Multidimensional Multiscale Percolation |
topic |
Features Lymphomas Multidimensional Multiscale Percolation |
description |
Non-Hodgkin lymphomas are a health problem that affects over 70,000 people per year in the United States alone. The early diagnosis and the identification of this lymphoma are essential for an effective treatment. The classification of non-Hodgkin lymphomas is a task that continues to rank as one of the main challenges faced by hematologists, pathologists, as well as in the producing of computer vision methods due to its inherent complexity. In this paper, we present a new method to quantify and classify tissue samples of non-Hodgkin lymphomas based on the percolation theory. The method consists of associating multiscale and multidimensional approaches in order to divide the image into smaller regions and then verifying color similarity between pixels. A cluster labeling algorithm was applied to each region of interest to obtain the values for the number of clusters, occurrence of percolation and coverage ratio of the largest cluster. The method was tested on different classifiers aiming to differentiate three different groups of non-Hodgkin lymphomas. The obtained results (AUC rates between 0.940 and 0.993) were compared to those provided by methods consolidated in the Literature, which indicates that the percolation theory is a suitable approach for identifying these three classes of non-Hodgkin lymphomas, those being: mantle cell lymphoma, follicular lymphoma and chronic lymphocytic leukemia. |
publishDate |
2017 |
dc.date.none.fl_str_mv |
2017-12-01 2018-12-11T17:15:47Z 2018-12-11T17:15:47Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1016/j.compbiomed.2017.10.012 Computers in Biology and Medicine, v. 91, p. 135-147. 1879-0534 0010-4825 http://hdl.handle.net/11449/175430 10.1016/j.compbiomed.2017.10.012 2-s2.0-85032857195 2-s2.0-85032857195.pdf |
url |
http://dx.doi.org/10.1016/j.compbiomed.2017.10.012 http://hdl.handle.net/11449/175430 |
identifier_str_mv |
Computers in Biology and Medicine, v. 91, p. 135-147. 1879-0534 0010-4825 10.1016/j.compbiomed.2017.10.012 2-s2.0-85032857195 2-s2.0-85032857195.pdf |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Computers in Biology and Medicine 0,591 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
135-147 application/pdf |
dc.source.none.fl_str_mv |
Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
|
_version_ |
1808128935443038208 |