Features based on the percolation theory for quantification of non-Hodgkin lymphomas

Detalhes bibliográficos
Autor(a) principal: Roberto, Guilherme F. [UNESP]
Data de Publicação: 2017
Outros Autores: Neves, Leandro A. [UNESP], Nascimento, Marcelo Z., Tosta, Thaína A.A., Longo, Leonardo C. [UNESP], Martins, Alessandro S., Faria, Paulo R.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1016/j.compbiomed.2017.10.012
http://hdl.handle.net/11449/175430
Resumo: Non-Hodgkin lymphomas are a health problem that affects over 70,000 people per year in the United States alone. The early diagnosis and the identification of this lymphoma are essential for an effective treatment. The classification of non-Hodgkin lymphomas is a task that continues to rank as one of the main challenges faced by hematologists, pathologists, as well as in the producing of computer vision methods due to its inherent complexity. In this paper, we present a new method to quantify and classify tissue samples of non-Hodgkin lymphomas based on the percolation theory. The method consists of associating multiscale and multidimensional approaches in order to divide the image into smaller regions and then verifying color similarity between pixels. A cluster labeling algorithm was applied to each region of interest to obtain the values for the number of clusters, occurrence of percolation and coverage ratio of the largest cluster. The method was tested on different classifiers aiming to differentiate three different groups of non-Hodgkin lymphomas. The obtained results (AUC rates between 0.940 and 0.993) were compared to those provided by methods consolidated in the Literature, which indicates that the percolation theory is a suitable approach for identifying these three classes of non-Hodgkin lymphomas, those being: mantle cell lymphoma, follicular lymphoma and chronic lymphocytic leukemia.
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spelling Features based on the percolation theory for quantification of non-Hodgkin lymphomasFeaturesLymphomasMultidimensionalMultiscalePercolationNon-Hodgkin lymphomas are a health problem that affects over 70,000 people per year in the United States alone. The early diagnosis and the identification of this lymphoma are essential for an effective treatment. The classification of non-Hodgkin lymphomas is a task that continues to rank as one of the main challenges faced by hematologists, pathologists, as well as in the producing of computer vision methods due to its inherent complexity. In this paper, we present a new method to quantify and classify tissue samples of non-Hodgkin lymphomas based on the percolation theory. The method consists of associating multiscale and multidimensional approaches in order to divide the image into smaller regions and then verifying color similarity between pixels. A cluster labeling algorithm was applied to each region of interest to obtain the values for the number of clusters, occurrence of percolation and coverage ratio of the largest cluster. The method was tested on different classifiers aiming to differentiate three different groups of non-Hodgkin lymphomas. The obtained results (AUC rates between 0.940 and 0.993) were compared to those provided by methods consolidated in the Literature, which indicates that the percolation theory is a suitable approach for identifying these three classes of non-Hodgkin lymphomas, those being: mantle cell lymphoma, follicular lymphoma and chronic lymphocytic leukemia.Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)Fundação de Amparo à Pesquisa do Estado de Minas Gerais (FAPEMIG)Department of Computer Science and Statistics (DCCE) São Paulo State University (UNESP), R. Cristóvão Colombo, 2265Faculty of Computation (FACOM) - Federal University of Uberlândia (UFU), Av. João Neves de Ávila 2121, Bl.BCenter of Mathematics Computing and Cognition Federal University of ABC (UFABC), Av. dos Estados, 5001Federal Institute of Triangulo Mineiro (IFTM), R. Belarmino Vilela Junqueira S/NDepartment of Histology and Morphology Institute of Biomedical Science Federal University of Uberlândia (UFU), Av. Amazonas, S/NDepartment of Computer Science and Statistics (DCCE) São Paulo State University (UNESP), R. Cristóvão Colombo, 2265CAPES: 33004153073P9FAPEMIG: APQ-02885-15Universidade Estadual Paulista (Unesp)Universidade Federal de Uberlândia (UFU)Universidade Federal do ABC (UFABC)Federal Institute of Triangulo Mineiro (IFTM)Roberto, Guilherme F. [UNESP]Neves, Leandro A. [UNESP]Nascimento, Marcelo Z.Tosta, Thaína A.A.Longo, Leonardo C. [UNESP]Martins, Alessandro S.Faria, Paulo R.2018-12-11T17:15:47Z2018-12-11T17:15:47Z2017-12-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article135-147application/pdfhttp://dx.doi.org/10.1016/j.compbiomed.2017.10.012Computers in Biology and Medicine, v. 91, p. 135-147.1879-05340010-4825http://hdl.handle.net/11449/17543010.1016/j.compbiomed.2017.10.0122-s2.0-850328571952-s2.0-85032857195.pdfScopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengComputers in Biology and Medicine0,591info:eu-repo/semantics/openAccess2023-11-22T06:18:55Zoai:repositorio.unesp.br:11449/175430Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T18:27:44.976292Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Features based on the percolation theory for quantification of non-Hodgkin lymphomas
title Features based on the percolation theory for quantification of non-Hodgkin lymphomas
spellingShingle Features based on the percolation theory for quantification of non-Hodgkin lymphomas
Roberto, Guilherme F. [UNESP]
Features
Lymphomas
Multidimensional
Multiscale
Percolation
title_short Features based on the percolation theory for quantification of non-Hodgkin lymphomas
title_full Features based on the percolation theory for quantification of non-Hodgkin lymphomas
title_fullStr Features based on the percolation theory for quantification of non-Hodgkin lymphomas
title_full_unstemmed Features based on the percolation theory for quantification of non-Hodgkin lymphomas
title_sort Features based on the percolation theory for quantification of non-Hodgkin lymphomas
author Roberto, Guilherme F. [UNESP]
author_facet Roberto, Guilherme F. [UNESP]
Neves, Leandro A. [UNESP]
Nascimento, Marcelo Z.
Tosta, Thaína A.A.
Longo, Leonardo C. [UNESP]
Martins, Alessandro S.
Faria, Paulo R.
author_role author
author2 Neves, Leandro A. [UNESP]
Nascimento, Marcelo Z.
Tosta, Thaína A.A.
Longo, Leonardo C. [UNESP]
Martins, Alessandro S.
Faria, Paulo R.
author2_role author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (Unesp)
Universidade Federal de Uberlândia (UFU)
Universidade Federal do ABC (UFABC)
Federal Institute of Triangulo Mineiro (IFTM)
dc.contributor.author.fl_str_mv Roberto, Guilherme F. [UNESP]
Neves, Leandro A. [UNESP]
Nascimento, Marcelo Z.
Tosta, Thaína A.A.
Longo, Leonardo C. [UNESP]
Martins, Alessandro S.
Faria, Paulo R.
dc.subject.por.fl_str_mv Features
Lymphomas
Multidimensional
Multiscale
Percolation
topic Features
Lymphomas
Multidimensional
Multiscale
Percolation
description Non-Hodgkin lymphomas are a health problem that affects over 70,000 people per year in the United States alone. The early diagnosis and the identification of this lymphoma are essential for an effective treatment. The classification of non-Hodgkin lymphomas is a task that continues to rank as one of the main challenges faced by hematologists, pathologists, as well as in the producing of computer vision methods due to its inherent complexity. In this paper, we present a new method to quantify and classify tissue samples of non-Hodgkin lymphomas based on the percolation theory. The method consists of associating multiscale and multidimensional approaches in order to divide the image into smaller regions and then verifying color similarity between pixels. A cluster labeling algorithm was applied to each region of interest to obtain the values for the number of clusters, occurrence of percolation and coverage ratio of the largest cluster. The method was tested on different classifiers aiming to differentiate three different groups of non-Hodgkin lymphomas. The obtained results (AUC rates between 0.940 and 0.993) were compared to those provided by methods consolidated in the Literature, which indicates that the percolation theory is a suitable approach for identifying these three classes of non-Hodgkin lymphomas, those being: mantle cell lymphoma, follicular lymphoma and chronic lymphocytic leukemia.
publishDate 2017
dc.date.none.fl_str_mv 2017-12-01
2018-12-11T17:15:47Z
2018-12-11T17:15:47Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1016/j.compbiomed.2017.10.012
Computers in Biology and Medicine, v. 91, p. 135-147.
1879-0534
0010-4825
http://hdl.handle.net/11449/175430
10.1016/j.compbiomed.2017.10.012
2-s2.0-85032857195
2-s2.0-85032857195.pdf
url http://dx.doi.org/10.1016/j.compbiomed.2017.10.012
http://hdl.handle.net/11449/175430
identifier_str_mv Computers in Biology and Medicine, v. 91, p. 135-147.
1879-0534
0010-4825
10.1016/j.compbiomed.2017.10.012
2-s2.0-85032857195
2-s2.0-85032857195.pdf
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Computers in Biology and Medicine
0,591
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 135-147
application/pdf
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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