Plant iononne diagnosis using sound balances: case study with mango (Mangifera Indica)

Detalhes bibliográficos
Autor(a) principal: Parent, Serge-Etienne
Data de Publicação: 2013
Outros Autores: Parent, Leon E., Rozane, Danilo Eduardo [UNESP], Natale, William [UNESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.3389/fpls.2013.00449
http://hdl.handle.net/11449/113418
Resumo: Plant ionomes and soil nutrients are commonly diagnosed in agronomy using concentration and nutrient ratio ranges. However, both diagnoses are biased by redundancy of information, subcompositional incoherence and non-normal distribution inherent to compositional data, potentially leading to conflicting results and wrong inferences. Our objective was to present an unbiased statistical approach of plant nutrient diagnosis using a balance concept and mango (Mangifera indica) as test crop. We collected foliar samples at flowering stage in 175 mango orchards. The ionomes comprised 11 nutrients (S, N, P, K, Ca, Mg, B, Cu, Zn, Mn, Fe). Traditional multivariate methods were found to be biased. lonomes were thus represented by unbiased balances computed as isometric log ratios (ilr). Soil fertility attributes (pH and bioavailable nutrients) were transformed into balances to conduct discriminant analysis. The orchards differed more from genotype than soil nutrient signatures. A customized receiver operating characteristic (ROC) iterative procedure was developed to classify tissue ionomes between balanced/misbalanced and high/low-yielders. The ROC partitioning procedure showed that the critical Mahalanobis distance of 4.08 separating balanced from imbalanced specimens about yield cut-off of 128.5 kg fruit tree(-1) proved to be a fairly informative test (area under curve = 0.84-0.92). The [P vertical bar N,S] and [Mn vertical bar Cu,Zn] balances were found to be potential sources of misbalance in the less productive orchards, and should thus be further investigated in field experiments. We propose using a coherent pan balance diagnostic method with median ilr values of top yielders centered at fulcrums of a mobile and the critical Mahalanobis distance as a guide for global nutrient balance. Nutrient concentrations in weighing pans assisted appreciating nutrients as relative shortage, adequacy or excess in balances.
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spelling Plant iononne diagnosis using sound balances: case study with mango (Mangifera Indica)Plant nutritionionomicscrop managementmangocompositional data analysisPlant ionomes and soil nutrients are commonly diagnosed in agronomy using concentration and nutrient ratio ranges. However, both diagnoses are biased by redundancy of information, subcompositional incoherence and non-normal distribution inherent to compositional data, potentially leading to conflicting results and wrong inferences. Our objective was to present an unbiased statistical approach of plant nutrient diagnosis using a balance concept and mango (Mangifera indica) as test crop. We collected foliar samples at flowering stage in 175 mango orchards. The ionomes comprised 11 nutrients (S, N, P, K, Ca, Mg, B, Cu, Zn, Mn, Fe). Traditional multivariate methods were found to be biased. lonomes were thus represented by unbiased balances computed as isometric log ratios (ilr). Soil fertility attributes (pH and bioavailable nutrients) were transformed into balances to conduct discriminant analysis. The orchards differed more from genotype than soil nutrient signatures. A customized receiver operating characteristic (ROC) iterative procedure was developed to classify tissue ionomes between balanced/misbalanced and high/low-yielders. The ROC partitioning procedure showed that the critical Mahalanobis distance of 4.08 separating balanced from imbalanced specimens about yield cut-off of 128.5 kg fruit tree(-1) proved to be a fairly informative test (area under curve = 0.84-0.92). The [P vertical bar N,S] and [Mn vertical bar Cu,Zn] balances were found to be potential sources of misbalance in the less productive orchards, and should thus be further investigated in field experiments. We propose using a coherent pan balance diagnostic method with median ilr values of top yielders centered at fulcrums of a mobile and the critical Mahalanobis distance as a guide for global nutrient balance. Nutrient concentrations in weighing pans assisted appreciating nutrients as relative shortage, adequacy or excess in balances.Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Natural Sciences and Engineering Council of CanadaUniv Laval, ERSAM, Dept Soils & Agrifood Engn, Quebec City, PQ G1V 0A6, CanadaUniv Estadual Paulista, Dept Agron, Registro, BrazilUniv Estadual Paulista, Dept Solos & Adubos, Jaboticabal, BrazilUniv Estadual Paulista, Dept Agron, Registro, BrazilUniv Estadual Paulista, Dept Solos & Adubos, Jaboticabal, BrazilNatural Sciences and Engineering Council of CanadaDG-2254Natural Sciences and Engineering Council of CanadaCRDPJ 385199-09Frontiers Research FoundationUniv LavalUniversidade Estadual Paulista (Unesp)Parent, Serge-EtienneParent, Leon E.Rozane, Danilo Eduardo [UNESP]Natale, William [UNESP]2014-12-03T13:11:41Z2014-12-03T13:11:41Z2013-11-12info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article12application/pdfhttp://dx.doi.org/10.3389/fpls.2013.00449Frontiers In Plant Science. Lausanne: Frontiers Research Foundation, v. 4, 12 p., 2013.1664-462Xhttp://hdl.handle.net/11449/11341810.3389/fpls.2013.00449WOS:000331445300001WOS000331445300001.pdf0618605154638494Web of Sciencereponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengFrontiers In Plant Science3.678info:eu-repo/semantics/openAccess2024-05-03T13:20:21Zoai:repositorio.unesp.br:11449/113418Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-05-03T13:20:21Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Plant iononne diagnosis using sound balances: case study with mango (Mangifera Indica)
title Plant iononne diagnosis using sound balances: case study with mango (Mangifera Indica)
spellingShingle Plant iononne diagnosis using sound balances: case study with mango (Mangifera Indica)
Parent, Serge-Etienne
Plant nutrition
ionomics
crop management
mango
compositional data analysis
title_short Plant iononne diagnosis using sound balances: case study with mango (Mangifera Indica)
title_full Plant iononne diagnosis using sound balances: case study with mango (Mangifera Indica)
title_fullStr Plant iononne diagnosis using sound balances: case study with mango (Mangifera Indica)
title_full_unstemmed Plant iononne diagnosis using sound balances: case study with mango (Mangifera Indica)
title_sort Plant iononne diagnosis using sound balances: case study with mango (Mangifera Indica)
author Parent, Serge-Etienne
author_facet Parent, Serge-Etienne
Parent, Leon E.
Rozane, Danilo Eduardo [UNESP]
Natale, William [UNESP]
author_role author
author2 Parent, Leon E.
Rozane, Danilo Eduardo [UNESP]
Natale, William [UNESP]
author2_role author
author
author
dc.contributor.none.fl_str_mv Univ Laval
Universidade Estadual Paulista (Unesp)
dc.contributor.author.fl_str_mv Parent, Serge-Etienne
Parent, Leon E.
Rozane, Danilo Eduardo [UNESP]
Natale, William [UNESP]
dc.subject.por.fl_str_mv Plant nutrition
ionomics
crop management
mango
compositional data analysis
topic Plant nutrition
ionomics
crop management
mango
compositional data analysis
description Plant ionomes and soil nutrients are commonly diagnosed in agronomy using concentration and nutrient ratio ranges. However, both diagnoses are biased by redundancy of information, subcompositional incoherence and non-normal distribution inherent to compositional data, potentially leading to conflicting results and wrong inferences. Our objective was to present an unbiased statistical approach of plant nutrient diagnosis using a balance concept and mango (Mangifera indica) as test crop. We collected foliar samples at flowering stage in 175 mango orchards. The ionomes comprised 11 nutrients (S, N, P, K, Ca, Mg, B, Cu, Zn, Mn, Fe). Traditional multivariate methods were found to be biased. lonomes were thus represented by unbiased balances computed as isometric log ratios (ilr). Soil fertility attributes (pH and bioavailable nutrients) were transformed into balances to conduct discriminant analysis. The orchards differed more from genotype than soil nutrient signatures. A customized receiver operating characteristic (ROC) iterative procedure was developed to classify tissue ionomes between balanced/misbalanced and high/low-yielders. The ROC partitioning procedure showed that the critical Mahalanobis distance of 4.08 separating balanced from imbalanced specimens about yield cut-off of 128.5 kg fruit tree(-1) proved to be a fairly informative test (area under curve = 0.84-0.92). The [P vertical bar N,S] and [Mn vertical bar Cu,Zn] balances were found to be potential sources of misbalance in the less productive orchards, and should thus be further investigated in field experiments. We propose using a coherent pan balance diagnostic method with median ilr values of top yielders centered at fulcrums of a mobile and the critical Mahalanobis distance as a guide for global nutrient balance. Nutrient concentrations in weighing pans assisted appreciating nutrients as relative shortage, adequacy or excess in balances.
publishDate 2013
dc.date.none.fl_str_mv 2013-11-12
2014-12-03T13:11:41Z
2014-12-03T13:11:41Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.3389/fpls.2013.00449
Frontiers In Plant Science. Lausanne: Frontiers Research Foundation, v. 4, 12 p., 2013.
1664-462X
http://hdl.handle.net/11449/113418
10.3389/fpls.2013.00449
WOS:000331445300001
WOS000331445300001.pdf
0618605154638494
url http://dx.doi.org/10.3389/fpls.2013.00449
http://hdl.handle.net/11449/113418
identifier_str_mv Frontiers In Plant Science. Lausanne: Frontiers Research Foundation, v. 4, 12 p., 2013.
1664-462X
10.3389/fpls.2013.00449
WOS:000331445300001
WOS000331445300001.pdf
0618605154638494
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Frontiers In Plant Science
3.678
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 12
application/pdf
dc.publisher.none.fl_str_mv Frontiers Research Foundation
publisher.none.fl_str_mv Frontiers Research Foundation
dc.source.none.fl_str_mv Web of Science
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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