The HPx software for multicomponent reactive transport during variably-saturated flow: Recent developments and applications

Detalhes bibliográficos
Autor(a) principal: Jacques, Diederik
Data de Publicação: 2018
Outros Autores: Simunek, Jiri, Mallants, Dirk, van Genuchten, Martinus Th. [UNESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1515/johh-2017-0049
http://hdl.handle.net/11449/160085
Resumo: HPx is a multicomponent reactive transport model which uses HYDRUS as the flow and transport solver and PHREEQC-3 as the biogeochemical solver. Some recent adaptations have significantly increased the flexibility of the software for different environmental and engineering applications. This paper gives an overview of the most significant changes of HPx, such as coupling transport properties to geochemical state variables, gas diffusion, and transport in two and three dimensions. OpenMP allows for parallel computing using shared memory. Enhancements for scripting may eventually simplify input definitions and create possibilities for defining templates for generic (sub) problems. We included a discussion of root solute uptake and colloid-affected solute transport to show that most or all of the comprehensive features of HYDRUS can be extended with geochemical information. Finally, an example is used to demonstrate how HPx, and similar reactive transport models, can be helpful in implementing different factors relevant for soil organic matter dynamics in soils. HPx offers a unique framework to couple spatial-temporal variations in water contents, temperatures, and water fluxes, with dissolved organic matter and CO2 transport, as well as bioturbation processes.
id UNSP_3527f7fe311401ee6b3c35aa61029cde
oai_identifier_str oai:repositorio.unesp.br:11449/160085
network_acronym_str UNSP
network_name_str Repositório Institucional da UNESP
repository_id_str 2946
spelling The HPx software for multicomponent reactive transport during variably-saturated flow: Recent developments and applicationsHYDRUSHPxNumerical modelingReactive transportOrganic matterBioturbationHPx is a multicomponent reactive transport model which uses HYDRUS as the flow and transport solver and PHREEQC-3 as the biogeochemical solver. Some recent adaptations have significantly increased the flexibility of the software for different environmental and engineering applications. This paper gives an overview of the most significant changes of HPx, such as coupling transport properties to geochemical state variables, gas diffusion, and transport in two and three dimensions. OpenMP allows for parallel computing using shared memory. Enhancements for scripting may eventually simplify input definitions and create possibilities for defining templates for generic (sub) problems. We included a discussion of root solute uptake and colloid-affected solute transport to show that most or all of the comprehensive features of HYDRUS can be extended with geochemical information. Finally, an example is used to demonstrate how HPx, and similar reactive transport models, can be helpful in implementing different factors relevant for soil organic matter dynamics in soils. HPx offers a unique framework to couple spatial-temporal variations in water contents, temperatures, and water fluxes, with dissolved organic matter and CO2 transport, as well as bioturbation processes.Nucl Res Ctr, Engineered & Geosyst Anal Unit, B-2400 Mol, BelgiumUniv Calif Riverside, Dept Environm Sci, Riverside, CA 92521 USACSIRO, Urrbrae, SA 5064, AustraliaSao Paulo State Univ, CEA, Ctr Environm Studies, BR-13506900 Rio Claro, SP, BrazilUniv Fed Rio de Janeiro, Dept Nucl Engn, BR-21945970 Rio De Janeiro, RJ, BrazilSao Paulo State Univ, CEA, Ctr Environm Studies, BR-13506900 Rio Claro, SP, BrazilVeda, Slovak Acad SciencesNucl Res CtrUniv Calif RiversideCSIROUniversidade Estadual Paulista (Unesp)Universidade Federal do Rio de Janeiro (UFRJ)Jacques, DiederikSimunek, JiriMallants, Dirkvan Genuchten, Martinus Th. [UNESP]2018-11-26T15:47:26Z2018-11-26T15:47:26Z2018-06-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article211-226application/pdfhttp://dx.doi.org/10.1515/johh-2017-0049Journal Of Hydrology And Hydromechanics. Bratislava: Veda, Slovak Acad Sciences, v. 66, n. 2, p. 211-226, 2018.0042-790Xhttp://hdl.handle.net/11449/16008510.1515/johh-2017-0049WOS:000424672300010WOS000424672300010.pdfWeb of Sciencereponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengJournal Of Hydrology And Hydromechanicsinfo:eu-repo/semantics/openAccess2023-10-21T06:10:24Zoai:repositorio.unesp.br:11449/160085Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T15:33:34.272408Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv The HPx software for multicomponent reactive transport during variably-saturated flow: Recent developments and applications
title The HPx software for multicomponent reactive transport during variably-saturated flow: Recent developments and applications
spellingShingle The HPx software for multicomponent reactive transport during variably-saturated flow: Recent developments and applications
Jacques, Diederik
HYDRUS
HPx
Numerical modeling
Reactive transport
Organic matter
Bioturbation
title_short The HPx software for multicomponent reactive transport during variably-saturated flow: Recent developments and applications
title_full The HPx software for multicomponent reactive transport during variably-saturated flow: Recent developments and applications
title_fullStr The HPx software for multicomponent reactive transport during variably-saturated flow: Recent developments and applications
title_full_unstemmed The HPx software for multicomponent reactive transport during variably-saturated flow: Recent developments and applications
title_sort The HPx software for multicomponent reactive transport during variably-saturated flow: Recent developments and applications
author Jacques, Diederik
author_facet Jacques, Diederik
Simunek, Jiri
Mallants, Dirk
van Genuchten, Martinus Th. [UNESP]
author_role author
author2 Simunek, Jiri
Mallants, Dirk
van Genuchten, Martinus Th. [UNESP]
author2_role author
author
author
dc.contributor.none.fl_str_mv Nucl Res Ctr
Univ Calif Riverside
CSIRO
Universidade Estadual Paulista (Unesp)
Universidade Federal do Rio de Janeiro (UFRJ)
dc.contributor.author.fl_str_mv Jacques, Diederik
Simunek, Jiri
Mallants, Dirk
van Genuchten, Martinus Th. [UNESP]
dc.subject.por.fl_str_mv HYDRUS
HPx
Numerical modeling
Reactive transport
Organic matter
Bioturbation
topic HYDRUS
HPx
Numerical modeling
Reactive transport
Organic matter
Bioturbation
description HPx is a multicomponent reactive transport model which uses HYDRUS as the flow and transport solver and PHREEQC-3 as the biogeochemical solver. Some recent adaptations have significantly increased the flexibility of the software for different environmental and engineering applications. This paper gives an overview of the most significant changes of HPx, such as coupling transport properties to geochemical state variables, gas diffusion, and transport in two and three dimensions. OpenMP allows for parallel computing using shared memory. Enhancements for scripting may eventually simplify input definitions and create possibilities for defining templates for generic (sub) problems. We included a discussion of root solute uptake and colloid-affected solute transport to show that most or all of the comprehensive features of HYDRUS can be extended with geochemical information. Finally, an example is used to demonstrate how HPx, and similar reactive transport models, can be helpful in implementing different factors relevant for soil organic matter dynamics in soils. HPx offers a unique framework to couple spatial-temporal variations in water contents, temperatures, and water fluxes, with dissolved organic matter and CO2 transport, as well as bioturbation processes.
publishDate 2018
dc.date.none.fl_str_mv 2018-11-26T15:47:26Z
2018-11-26T15:47:26Z
2018-06-01
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1515/johh-2017-0049
Journal Of Hydrology And Hydromechanics. Bratislava: Veda, Slovak Acad Sciences, v. 66, n. 2, p. 211-226, 2018.
0042-790X
http://hdl.handle.net/11449/160085
10.1515/johh-2017-0049
WOS:000424672300010
WOS000424672300010.pdf
url http://dx.doi.org/10.1515/johh-2017-0049
http://hdl.handle.net/11449/160085
identifier_str_mv Journal Of Hydrology And Hydromechanics. Bratislava: Veda, Slovak Acad Sciences, v. 66, n. 2, p. 211-226, 2018.
0042-790X
10.1515/johh-2017-0049
WOS:000424672300010
WOS000424672300010.pdf
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Journal Of Hydrology And Hydromechanics
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 211-226
application/pdf
dc.publisher.none.fl_str_mv Veda, Slovak Acad Sciences
publisher.none.fl_str_mv Veda, Slovak Acad Sciences
dc.source.none.fl_str_mv Web of Science
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
_version_ 1808128531009372160