Complete chloroplast genome of the orchid Cattleya crispata (Orchidaceae: Laeliinae), a Neotropical rupiculous species

Detalhes bibliográficos
Autor(a) principal: Perini, Violeta da Rocha
Data de Publicação: 2016
Outros Autores: Leles, Bruno [UNESP], Furtado, Carolina, Prosdocimi, Francisco
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.3109/19401736.2014.1003850
http://hdl.handle.net/11449/162419
Resumo: A partial genome dataset was sequenced for the orchid Cattleya crispata using both Illumina and 454 technologies. The chloroplast genome was assembled using iterative runs of MIRA software that yielded a circular molecule with 148,343 bp in length and deposited in GenBank database ( Accession Number KP168671). The plastid genome conserved the quadripartite structure present in most Orchidaceae chloroplasts and was composed by 79 protein-coding genes, 39 tRNAs and 8 rRNAs. Genome structure, gene order and orientation were similar to previously described chloroplasts for Cymbidium orchids, differing in gene order for petN and psbM genes. Data described here contain the first report of a complete chloroplast for the Neotropical subtribe Laeliinae and may contribute to improve the phylogenetic resolution and allow the development of new molecular markers for population genetic studies of orchids.
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spelling Complete chloroplast genome of the orchid Cattleya crispata (Orchidaceae: Laeliinae), a Neotropical rupiculous speciesEspinhaconext-generation-sequencingorchidplastid genomerock outcropA partial genome dataset was sequenced for the orchid Cattleya crispata using both Illumina and 454 technologies. The chloroplast genome was assembled using iterative runs of MIRA software that yielded a circular molecule with 148,343 bp in length and deposited in GenBank database ( Accession Number KP168671). The plastid genome conserved the quadripartite structure present in most Orchidaceae chloroplasts and was composed by 79 protein-coding genes, 39 tRNAs and 8 rRNAs. Genome structure, gene order and orientation were similar to previously described chloroplasts for Cymbidium orchids, differing in gene order for petN and psbM genes. Data described here contain the first report of a complete chloroplast for the Neotropical subtribe Laeliinae and may contribute to improve the phylogenetic resolution and allow the development of new molecular markers for population genetic studies of orchids.Fundação de Amparo à Pesquisa do Estado do Rio de Janeiro (FAPERJ)Fundação de Amparo à Pesquisa do Estado de Minas Gerais (FAPEMIG)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Fundacao BoticarioUniv Fed Rio de Janeiro, Inst Bioquim Med Leopoldo Meis, Lab Genom & Biodiversidade, Rio De Janeiro, BrazilMyleus Biotechnol, Belo Horizonte, MG, BrazilUniv Estadual Paulista, Dept Ecol, Rio Claro, SP, BrazilInst Nacl Canc, Div Genet, Rio De Janeiro, BrazilUniv Estadual Paulista, Dept Ecol, Rio Claro, SP, BrazilTaylor & Francis LtdUniversidade Federal do Rio de Janeiro (UFRJ)Myleus BiotechnolUniversidade Estadual Paulista (Unesp)Inst Nacl CancPerini, Violeta da RochaLeles, Bruno [UNESP]Furtado, CarolinaProsdocimi, Francisco2018-11-26T17:16:37Z2018-11-26T17:16:37Z2016-01-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article4075-4077application/pdfhttp://dx.doi.org/10.3109/19401736.2014.1003850Mitochondrial Dna Part A. Abingdon: Taylor & Francis Ltd, v. 27, n. 6, p. 4075-4077, 2016.2470-1394http://hdl.handle.net/11449/16241910.3109/19401736.2014.1003850WOS:000393307200090WOS000393307200090.pdfWeb of Sciencereponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengMitochondrial Dna Part A0,150info:eu-repo/semantics/openAccess2024-01-08T06:29:03Zoai:repositorio.unesp.br:11449/162419Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-01-08T06:29:03Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Complete chloroplast genome of the orchid Cattleya crispata (Orchidaceae: Laeliinae), a Neotropical rupiculous species
title Complete chloroplast genome of the orchid Cattleya crispata (Orchidaceae: Laeliinae), a Neotropical rupiculous species
spellingShingle Complete chloroplast genome of the orchid Cattleya crispata (Orchidaceae: Laeliinae), a Neotropical rupiculous species
Perini, Violeta da Rocha
Espinhaco
next-generation-sequencing
orchid
plastid genome
rock outcrop
title_short Complete chloroplast genome of the orchid Cattleya crispata (Orchidaceae: Laeliinae), a Neotropical rupiculous species
title_full Complete chloroplast genome of the orchid Cattleya crispata (Orchidaceae: Laeliinae), a Neotropical rupiculous species
title_fullStr Complete chloroplast genome of the orchid Cattleya crispata (Orchidaceae: Laeliinae), a Neotropical rupiculous species
title_full_unstemmed Complete chloroplast genome of the orchid Cattleya crispata (Orchidaceae: Laeliinae), a Neotropical rupiculous species
title_sort Complete chloroplast genome of the orchid Cattleya crispata (Orchidaceae: Laeliinae), a Neotropical rupiculous species
author Perini, Violeta da Rocha
author_facet Perini, Violeta da Rocha
Leles, Bruno [UNESP]
Furtado, Carolina
Prosdocimi, Francisco
author_role author
author2 Leles, Bruno [UNESP]
Furtado, Carolina
Prosdocimi, Francisco
author2_role author
author
author
dc.contributor.none.fl_str_mv Universidade Federal do Rio de Janeiro (UFRJ)
Myleus Biotechnol
Universidade Estadual Paulista (Unesp)
Inst Nacl Canc
dc.contributor.author.fl_str_mv Perini, Violeta da Rocha
Leles, Bruno [UNESP]
Furtado, Carolina
Prosdocimi, Francisco
dc.subject.por.fl_str_mv Espinhaco
next-generation-sequencing
orchid
plastid genome
rock outcrop
topic Espinhaco
next-generation-sequencing
orchid
plastid genome
rock outcrop
description A partial genome dataset was sequenced for the orchid Cattleya crispata using both Illumina and 454 technologies. The chloroplast genome was assembled using iterative runs of MIRA software that yielded a circular molecule with 148,343 bp in length and deposited in GenBank database ( Accession Number KP168671). The plastid genome conserved the quadripartite structure present in most Orchidaceae chloroplasts and was composed by 79 protein-coding genes, 39 tRNAs and 8 rRNAs. Genome structure, gene order and orientation were similar to previously described chloroplasts for Cymbidium orchids, differing in gene order for petN and psbM genes. Data described here contain the first report of a complete chloroplast for the Neotropical subtribe Laeliinae and may contribute to improve the phylogenetic resolution and allow the development of new molecular markers for population genetic studies of orchids.
publishDate 2016
dc.date.none.fl_str_mv 2016-01-01
2018-11-26T17:16:37Z
2018-11-26T17:16:37Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.3109/19401736.2014.1003850
Mitochondrial Dna Part A. Abingdon: Taylor & Francis Ltd, v. 27, n. 6, p. 4075-4077, 2016.
2470-1394
http://hdl.handle.net/11449/162419
10.3109/19401736.2014.1003850
WOS:000393307200090
WOS000393307200090.pdf
url http://dx.doi.org/10.3109/19401736.2014.1003850
http://hdl.handle.net/11449/162419
identifier_str_mv Mitochondrial Dna Part A. Abingdon: Taylor & Francis Ltd, v. 27, n. 6, p. 4075-4077, 2016.
2470-1394
10.3109/19401736.2014.1003850
WOS:000393307200090
WOS000393307200090.pdf
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Mitochondrial Dna Part A
0,150
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 4075-4077
application/pdf
dc.publisher.none.fl_str_mv Taylor & Francis Ltd
publisher.none.fl_str_mv Taylor & Francis Ltd
dc.source.none.fl_str_mv Web of Science
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
_version_ 1799965560962809856

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