Genome-wide profiling and predicted significance of post-mortem brain microRNA in Alzheimer's disease

Detalhes bibliográficos
Autor(a) principal: Henriques, Adriane D.
Data de Publicação: 2020
Outros Autores: Machado-Silva, Wilcelly, Leite, Renata E. P. [UNESP], Suemoto, Claudia K. [UNESP], Leite, Katia R. M. [UNESP], Srougi, Miguel [UNESP], Pereira, Alexandre C. [UNESP], Jacob-Filho, Wilson [UNESP], Nobrega, Otavio T., Brazilian Aging Brain Study Grp
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1016/j.mad.2020.111352
http://hdl.handle.net/11449/208875
Resumo: Background: MicroRNAs (miRNAs) emerged as regulatory elements, with up to 70 % of all miRNAs found in the brain, playing key roles in the onset of Alzheimer's disease (AD). Objective: to broadly assess the expression levels of miRNAs in post-mortem brain (PMB) samples of individuals deceased with or without AD. Methods: A high-throughput micmarray platform was used to sketch miRNA samples isolated from superior and middle temporal gyrus of A+T+ AD cases, compared to samples from age- and sex-matched AD-devoid donors, all pulled from the University of Sao Paulo's Brain Biobank. The miRNAs identified by microarray were subjected to validation with specific qRT-PCR assays employing independent PMB samples. Results: The analyses yielded 6 miRNAs differentially expressed (miR-30e_3p; miR-365b_5p; miR-664_3p; miR1202; miR-4286; miR-4449), and their interplay with specific AD-related genes and signaling pathways was explored using bioinformatics analyses (including the KEGG package, mirPath v.3). In the end, 3 miRNAs, 7 target genes and 11 pathways were found closely interrelated and implicated with the AD pathophysiology. Conclusion: A dysregulation on a subset of these miRNAs appear to affect a range of genes (notably PTEN) and pathways (emphasis to PI3K-AKT) so to provide grounds for neuronal death by apoptotic signaling, autophagy and/or oxidative damage.
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spelling Genome-wide profiling and predicted significance of post-mortem brain microRNA in Alzheimer's diseaseAlzheimer's diseasemicroRNAArray analysisDIANA miRPathBackground: MicroRNAs (miRNAs) emerged as regulatory elements, with up to 70 % of all miRNAs found in the brain, playing key roles in the onset of Alzheimer's disease (AD). Objective: to broadly assess the expression levels of miRNAs in post-mortem brain (PMB) samples of individuals deceased with or without AD. Methods: A high-throughput micmarray platform was used to sketch miRNA samples isolated from superior and middle temporal gyrus of A+T+ AD cases, compared to samples from age- and sex-matched AD-devoid donors, all pulled from the University of Sao Paulo's Brain Biobank. The miRNAs identified by microarray were subjected to validation with specific qRT-PCR assays employing independent PMB samples. Results: The analyses yielded 6 miRNAs differentially expressed (miR-30e_3p; miR-365b_5p; miR-664_3p; miR1202; miR-4286; miR-4449), and their interplay with specific AD-related genes and signaling pathways was explored using bioinformatics analyses (including the KEGG package, mirPath v.3). In the end, 3 miRNAs, 7 target genes and 11 pathways were found closely interrelated and implicated with the AD pathophysiology. Conclusion: A dysregulation on a subset of these miRNAs appear to affect a range of genes (notably PTEN) and pathways (emphasis to PI3K-AKT) so to provide grounds for neuronal death by apoptotic signaling, autophagy and/or oxidative damage.Fundacao de Amparo a Pesquisa do Distrito Federal (FAP-DF)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)Fed Univ Brasilia UnB, Brasilia, DF, BrazilState Univ Sao Paulo USP, Sao Paulo, SP, BrazilMcGill Univ Hlth Ctr MUHC, Montreal, PQ, CanadaState Univ Sao Paulo USP, Sao Paulo, SP, BrazilFundacao de Amparo a Pesquisa do Distrito Federal (FAP-DF): 193.000.967/2015CNPq: 445692/2014-6CAPES: 001CNPq: 303,540/2019 2Elsevier B.V.Fed Univ Brasilia UnBUniversidade Estadual Paulista (Unesp)McGill Univ Hlth Ctr MUHCHenriques, Adriane D.Machado-Silva, WilcellyLeite, Renata E. P. [UNESP]Suemoto, Claudia K. [UNESP]Leite, Katia R. M. [UNESP]Srougi, Miguel [UNESP]Pereira, Alexandre C. [UNESP]Jacob-Filho, Wilson [UNESP]Nobrega, Otavio T.Brazilian Aging Brain Study Grp2021-06-25T11:23:34Z2021-06-25T11:23:34Z2020-10-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article9http://dx.doi.org/10.1016/j.mad.2020.111352Mechanisms Of Ageing And Development. Clare: Elsevier Ireland Ltd, v. 191, 9 p., 2020.0047-6374http://hdl.handle.net/11449/20887510.1016/j.mad.2020.111352WOS:000579507600021Web of Sciencereponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengMechanisms Of Ageing And Developmentinfo:eu-repo/semantics/openAccess2021-10-23T19:23:17Zoai:repositorio.unesp.br:11449/208875Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462021-10-23T19:23:17Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Genome-wide profiling and predicted significance of post-mortem brain microRNA in Alzheimer's disease
title Genome-wide profiling and predicted significance of post-mortem brain microRNA in Alzheimer's disease
spellingShingle Genome-wide profiling and predicted significance of post-mortem brain microRNA in Alzheimer's disease
Henriques, Adriane D.
Alzheimer's disease
microRNA
Array analysis
DIANA miRPath
title_short Genome-wide profiling and predicted significance of post-mortem brain microRNA in Alzheimer's disease
title_full Genome-wide profiling and predicted significance of post-mortem brain microRNA in Alzheimer's disease
title_fullStr Genome-wide profiling and predicted significance of post-mortem brain microRNA in Alzheimer's disease
title_full_unstemmed Genome-wide profiling and predicted significance of post-mortem brain microRNA in Alzheimer's disease
title_sort Genome-wide profiling and predicted significance of post-mortem brain microRNA in Alzheimer's disease
author Henriques, Adriane D.
author_facet Henriques, Adriane D.
Machado-Silva, Wilcelly
Leite, Renata E. P. [UNESP]
Suemoto, Claudia K. [UNESP]
Leite, Katia R. M. [UNESP]
Srougi, Miguel [UNESP]
Pereira, Alexandre C. [UNESP]
Jacob-Filho, Wilson [UNESP]
Nobrega, Otavio T.
Brazilian Aging Brain Study Grp
author_role author
author2 Machado-Silva, Wilcelly
Leite, Renata E. P. [UNESP]
Suemoto, Claudia K. [UNESP]
Leite, Katia R. M. [UNESP]
Srougi, Miguel [UNESP]
Pereira, Alexandre C. [UNESP]
Jacob-Filho, Wilson [UNESP]
Nobrega, Otavio T.
Brazilian Aging Brain Study Grp
author2_role author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Fed Univ Brasilia UnB
Universidade Estadual Paulista (Unesp)
McGill Univ Hlth Ctr MUHC
dc.contributor.author.fl_str_mv Henriques, Adriane D.
Machado-Silva, Wilcelly
Leite, Renata E. P. [UNESP]
Suemoto, Claudia K. [UNESP]
Leite, Katia R. M. [UNESP]
Srougi, Miguel [UNESP]
Pereira, Alexandre C. [UNESP]
Jacob-Filho, Wilson [UNESP]
Nobrega, Otavio T.
Brazilian Aging Brain Study Grp
dc.subject.por.fl_str_mv Alzheimer's disease
microRNA
Array analysis
DIANA miRPath
topic Alzheimer's disease
microRNA
Array analysis
DIANA miRPath
description Background: MicroRNAs (miRNAs) emerged as regulatory elements, with up to 70 % of all miRNAs found in the brain, playing key roles in the onset of Alzheimer's disease (AD). Objective: to broadly assess the expression levels of miRNAs in post-mortem brain (PMB) samples of individuals deceased with or without AD. Methods: A high-throughput micmarray platform was used to sketch miRNA samples isolated from superior and middle temporal gyrus of A+T+ AD cases, compared to samples from age- and sex-matched AD-devoid donors, all pulled from the University of Sao Paulo's Brain Biobank. The miRNAs identified by microarray were subjected to validation with specific qRT-PCR assays employing independent PMB samples. Results: The analyses yielded 6 miRNAs differentially expressed (miR-30e_3p; miR-365b_5p; miR-664_3p; miR1202; miR-4286; miR-4449), and their interplay with specific AD-related genes and signaling pathways was explored using bioinformatics analyses (including the KEGG package, mirPath v.3). In the end, 3 miRNAs, 7 target genes and 11 pathways were found closely interrelated and implicated with the AD pathophysiology. Conclusion: A dysregulation on a subset of these miRNAs appear to affect a range of genes (notably PTEN) and pathways (emphasis to PI3K-AKT) so to provide grounds for neuronal death by apoptotic signaling, autophagy and/or oxidative damage.
publishDate 2020
dc.date.none.fl_str_mv 2020-10-01
2021-06-25T11:23:34Z
2021-06-25T11:23:34Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1016/j.mad.2020.111352
Mechanisms Of Ageing And Development. Clare: Elsevier Ireland Ltd, v. 191, 9 p., 2020.
0047-6374
http://hdl.handle.net/11449/208875
10.1016/j.mad.2020.111352
WOS:000579507600021
url http://dx.doi.org/10.1016/j.mad.2020.111352
http://hdl.handle.net/11449/208875
identifier_str_mv Mechanisms Of Ageing And Development. Clare: Elsevier Ireland Ltd, v. 191, 9 p., 2020.
0047-6374
10.1016/j.mad.2020.111352
WOS:000579507600021
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Mechanisms Of Ageing And Development
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 9
dc.publisher.none.fl_str_mv Elsevier B.V.
publisher.none.fl_str_mv Elsevier B.V.
dc.source.none.fl_str_mv Web of Science
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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