Molecular phylogeny of advanced snakes (Serpentes, Caenophidia) with an emphasis on South American xenodontines: A revised classification and descriptions of new taxa

Detalhes bibliográficos
Autor(a) principal: Zaher, Hussam
Data de Publicação: 2009
Outros Autores: Grazziotin, Felipe Gobbi [UNESP], Cadle, John E., Murphy, Robert W., de Moura-Leite, Julio Cesar, Bonatto, Sandro L.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1590/S0031-10492009001100001
http://hdl.handle.net/11449/71032
Resumo: We present a molecular phylogenetic analysis of caenophidian (advanced) snakes using sequences from two mitochondrial genes (12S and 16S rRNA) and one nuclear (c-mos) gene (1681 total base pairs), and with 131 terminal taxa sampled from throughout all major caenophidian lineages but focussing on Neotropical xenodontines. Direct optimization parsimony analysis resulted in a well-resolved phylogenetic tree, which corroborates some clades identified in previous analyses and suggests new hypotheses for the composition and relationships of others. The major salient points of our analysis are: (1) placement of Acrochordus, Xenodermatids, and Pareatids as successive outgroups to all remaining caenophidians (including viperids, elapids, atractaspidids, and all other colubrid groups); (2) within the latter group, viperids and homalopsids are sucessive sister clades to all remaining snakes; (3) the following monophyletic clades within crown group caenophidians: Afro-Asian psammophiids (including Mimophis from Madagascar), Elapidae (including hydrophiines but excluding Homoroselaps), Pseudoxyrhophiinae, Colubrinae, Natricinae, Dipsadinae, and Xenodontinae. Homoroselaps is associated with atractaspidids. Our analysis suggests some taxonomic changes within xenodontines, including new taxonomy for Alsophis elegans, Liophis amarali, and further taxonomic changes within Xenodontini and the West Indian radiation of xenodontines. Based on our molecular analysis, we present a revised classification for caenophidians and provide morphological diagnoses for many of the included clades; we also highlight groups where much more work is needed. We name as new two higher taxonomic clades within Caenophidia, one new subfamily within Dipsadidae, and, within Xenodontinae five new tribes, six new genera and two resurrected genera. We synonymize Xenoxybelis and Pseudablabes with Philodryas; Erythrolamprus with Liophis; and Lystrophis and Waglerophis with Xenodon.
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spelling Molecular phylogeny of advanced snakes (Serpentes, Caenophidia) with an emphasis on South American xenodontines: A revised classification and descriptions of new taxaCaenophidiaClassificationColubridaeColubroideaDipsadinaeElapoideaNew genusPhylogenySerpentesSouth AmericaSystematicsWest IndiesXenodontinaeAcrochordusAlsophis elegansAtractaspididaeColubrinaeElapidaeErythrolamprusHomalopsinaeHomoroselapsLiophisMimophisNatricinaePhilodryasPseudoxyrhophiinaeViperidaeWaglerophisXenodonXenoxybelisWe present a molecular phylogenetic analysis of caenophidian (advanced) snakes using sequences from two mitochondrial genes (12S and 16S rRNA) and one nuclear (c-mos) gene (1681 total base pairs), and with 131 terminal taxa sampled from throughout all major caenophidian lineages but focussing on Neotropical xenodontines. Direct optimization parsimony analysis resulted in a well-resolved phylogenetic tree, which corroborates some clades identified in previous analyses and suggests new hypotheses for the composition and relationships of others. The major salient points of our analysis are: (1) placement of Acrochordus, Xenodermatids, and Pareatids as successive outgroups to all remaining caenophidians (including viperids, elapids, atractaspidids, and all other colubrid groups); (2) within the latter group, viperids and homalopsids are sucessive sister clades to all remaining snakes; (3) the following monophyletic clades within crown group caenophidians: Afro-Asian psammophiids (including Mimophis from Madagascar), Elapidae (including hydrophiines but excluding Homoroselaps), Pseudoxyrhophiinae, Colubrinae, Natricinae, Dipsadinae, and Xenodontinae. Homoroselaps is associated with atractaspidids. Our analysis suggests some taxonomic changes within xenodontines, including new taxonomy for Alsophis elegans, Liophis amarali, and further taxonomic changes within Xenodontini and the West Indian radiation of xenodontines. Based on our molecular analysis, we present a revised classification for caenophidians and provide morphological diagnoses for many of the included clades; we also highlight groups where much more work is needed. We name as new two higher taxonomic clades within Caenophidia, one new subfamily within Dipsadidae, and, within Xenodontinae five new tribes, six new genera and two resurrected genera. We synonymize Xenoxybelis and Pseudablabes with Philodryas; Erythrolamprus with Liophis; and Lystrophis and Waglerophis with Xenodon.Museu de Zoologia Universidade de São Paulo, Caixa Postal 42.494, 04218-970, São Paulo, SPLaboratório de Biologia Genômica e Molecular PUCRS, Porto Alegre, RSPrograma de Pós Graduação em Zoologia UNESP, Rio Claro, SPDepartment of Herpetology California Academy of Sciences, Golden Gate Park, San Francisco, CA 94118Centre for Biodiversity and Conservation Biology, Royal Ontario Museum, TorontoState Key Laboratory of Genetic Resources and Evolution Kunming Institute of Zoology The Chinese Academy of Sciences, Kunming 650223Museu de História Natural Capão da Imbuia Pontifícia Universidade Católica do Paraná, Curitiba, PRPrograma de Pós Graduação em Zoologia UNESP, Rio Claro, SPUniversidade de São Paulo (USP)Pontifícia Universidade Católica do Rio Grande do Sul (PUCRS)Universidade Estadual Paulista (Unesp)California Academy of SciencesCentre for Biodiversity and Conservation BiologyThe Chinese Academy of SciencesPontifícia Universidade Católica do Paraná (PUCPR)Zaher, HussamGrazziotin, Felipe Gobbi [UNESP]Cadle, John E.Murphy, Robert W.de Moura-Leite, Julio CesarBonatto, Sandro L.2014-05-27T11:23:55Z2014-05-27T11:23:55Z2009-06-02info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article115-153application/pdfhttp://dx.doi.org/10.1590/S0031-10492009001100001Papeis Avulsos de Zoologia, v. 49, n. 11, p. 115-153, 2009.0031-10491807-0205http://hdl.handle.net/11449/7103210.1590/S0031-10492009001100001S0031-104920090011000012-s2.0-653491763932-s2.0-65349176393.pdfScopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengPapeis Avulsos de Zoologia0,4170,417info:eu-repo/semantics/openAccess2023-12-24T06:22:12Zoai:repositorio.unesp.br:11449/71032Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T21:11:55.401939Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Molecular phylogeny of advanced snakes (Serpentes, Caenophidia) with an emphasis on South American xenodontines: A revised classification and descriptions of new taxa
title Molecular phylogeny of advanced snakes (Serpentes, Caenophidia) with an emphasis on South American xenodontines: A revised classification and descriptions of new taxa
spellingShingle Molecular phylogeny of advanced snakes (Serpentes, Caenophidia) with an emphasis on South American xenodontines: A revised classification and descriptions of new taxa
Zaher, Hussam
Caenophidia
Classification
Colubridae
Colubroidea
Dipsadinae
Elapoidea
New genus
Phylogeny
Serpentes
South America
Systematics
West Indies
Xenodontinae
Acrochordus
Alsophis elegans
Atractaspididae
Colubrinae
Elapidae
Erythrolamprus
Homalopsinae
Homoroselaps
Liophis
Mimophis
Natricinae
Philodryas
Pseudoxyrhophiinae
Viperidae
Waglerophis
Xenodon
Xenoxybelis
title_short Molecular phylogeny of advanced snakes (Serpentes, Caenophidia) with an emphasis on South American xenodontines: A revised classification and descriptions of new taxa
title_full Molecular phylogeny of advanced snakes (Serpentes, Caenophidia) with an emphasis on South American xenodontines: A revised classification and descriptions of new taxa
title_fullStr Molecular phylogeny of advanced snakes (Serpentes, Caenophidia) with an emphasis on South American xenodontines: A revised classification and descriptions of new taxa
title_full_unstemmed Molecular phylogeny of advanced snakes (Serpentes, Caenophidia) with an emphasis on South American xenodontines: A revised classification and descriptions of new taxa
title_sort Molecular phylogeny of advanced snakes (Serpentes, Caenophidia) with an emphasis on South American xenodontines: A revised classification and descriptions of new taxa
author Zaher, Hussam
author_facet Zaher, Hussam
Grazziotin, Felipe Gobbi [UNESP]
Cadle, John E.
Murphy, Robert W.
de Moura-Leite, Julio Cesar
Bonatto, Sandro L.
author_role author
author2 Grazziotin, Felipe Gobbi [UNESP]
Cadle, John E.
Murphy, Robert W.
de Moura-Leite, Julio Cesar
Bonatto, Sandro L.
author2_role author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade de São Paulo (USP)
Pontifícia Universidade Católica do Rio Grande do Sul (PUCRS)
Universidade Estadual Paulista (Unesp)
California Academy of Sciences
Centre for Biodiversity and Conservation Biology
The Chinese Academy of Sciences
Pontifícia Universidade Católica do Paraná (PUCPR)
dc.contributor.author.fl_str_mv Zaher, Hussam
Grazziotin, Felipe Gobbi [UNESP]
Cadle, John E.
Murphy, Robert W.
de Moura-Leite, Julio Cesar
Bonatto, Sandro L.
dc.subject.por.fl_str_mv Caenophidia
Classification
Colubridae
Colubroidea
Dipsadinae
Elapoidea
New genus
Phylogeny
Serpentes
South America
Systematics
West Indies
Xenodontinae
Acrochordus
Alsophis elegans
Atractaspididae
Colubrinae
Elapidae
Erythrolamprus
Homalopsinae
Homoroselaps
Liophis
Mimophis
Natricinae
Philodryas
Pseudoxyrhophiinae
Viperidae
Waglerophis
Xenodon
Xenoxybelis
topic Caenophidia
Classification
Colubridae
Colubroidea
Dipsadinae
Elapoidea
New genus
Phylogeny
Serpentes
South America
Systematics
West Indies
Xenodontinae
Acrochordus
Alsophis elegans
Atractaspididae
Colubrinae
Elapidae
Erythrolamprus
Homalopsinae
Homoroselaps
Liophis
Mimophis
Natricinae
Philodryas
Pseudoxyrhophiinae
Viperidae
Waglerophis
Xenodon
Xenoxybelis
description We present a molecular phylogenetic analysis of caenophidian (advanced) snakes using sequences from two mitochondrial genes (12S and 16S rRNA) and one nuclear (c-mos) gene (1681 total base pairs), and with 131 terminal taxa sampled from throughout all major caenophidian lineages but focussing on Neotropical xenodontines. Direct optimization parsimony analysis resulted in a well-resolved phylogenetic tree, which corroborates some clades identified in previous analyses and suggests new hypotheses for the composition and relationships of others. The major salient points of our analysis are: (1) placement of Acrochordus, Xenodermatids, and Pareatids as successive outgroups to all remaining caenophidians (including viperids, elapids, atractaspidids, and all other colubrid groups); (2) within the latter group, viperids and homalopsids are sucessive sister clades to all remaining snakes; (3) the following monophyletic clades within crown group caenophidians: Afro-Asian psammophiids (including Mimophis from Madagascar), Elapidae (including hydrophiines but excluding Homoroselaps), Pseudoxyrhophiinae, Colubrinae, Natricinae, Dipsadinae, and Xenodontinae. Homoroselaps is associated with atractaspidids. Our analysis suggests some taxonomic changes within xenodontines, including new taxonomy for Alsophis elegans, Liophis amarali, and further taxonomic changes within Xenodontini and the West Indian radiation of xenodontines. Based on our molecular analysis, we present a revised classification for caenophidians and provide morphological diagnoses for many of the included clades; we also highlight groups where much more work is needed. We name as new two higher taxonomic clades within Caenophidia, one new subfamily within Dipsadidae, and, within Xenodontinae five new tribes, six new genera and two resurrected genera. We synonymize Xenoxybelis and Pseudablabes with Philodryas; Erythrolamprus with Liophis; and Lystrophis and Waglerophis with Xenodon.
publishDate 2009
dc.date.none.fl_str_mv 2009-06-02
2014-05-27T11:23:55Z
2014-05-27T11:23:55Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1590/S0031-10492009001100001
Papeis Avulsos de Zoologia, v. 49, n. 11, p. 115-153, 2009.
0031-1049
1807-0205
http://hdl.handle.net/11449/71032
10.1590/S0031-10492009001100001
S0031-10492009001100001
2-s2.0-65349176393
2-s2.0-65349176393.pdf
url http://dx.doi.org/10.1590/S0031-10492009001100001
http://hdl.handle.net/11449/71032
identifier_str_mv Papeis Avulsos de Zoologia, v. 49, n. 11, p. 115-153, 2009.
0031-1049
1807-0205
10.1590/S0031-10492009001100001
S0031-10492009001100001
2-s2.0-65349176393
2-s2.0-65349176393.pdf
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Papeis Avulsos de Zoologia
0,417
0,417
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 115-153
application/pdf
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
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