EasyGuide Plasmids Support in Vivo Assembly of gRNAs for CRISPR/Cas9 Applications in Saccharomyces cerevisiae
Autor(a) principal: | |
---|---|
Data de Publicação: | 2022 |
Outros Autores: | , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.1021/acssynbio.2c00348 http://hdl.handle.net/11449/246154 |
Resumo: | Most CRISPR/Cas9 applications in yeast rely on a plasmid-based expression of Cas9 and its guide RNA (gRNA) containing a 20-nucleotides (nts) spacer tailored to each genomic target. The lengthy assembly of this customized gRNA requires at least 3-5 days for its precloning in Escherichia coli, purification, validation, and cotransformation with Cas9 into a yeast strain. Here, we constructed a series of 12 EasyGuide plasmids to simplify CRISPR/Cas9 applications in Saccharomyces cerevisiae. The new vectors provide templates for generating PCR fragments that can assemble up to six functional gRNAs directly into yeasts via homologous recombination between the 20-nts spacers. By dispensing precloning in E. coli, yeast in vivo gRNA assembly significantly reduces the CRISPR/Cas9 experimental workload. A highly efficient yeast genome editing procedure, involving PCR amplification of gRNAs and donors, followed by their transformation into a Cas9-expressing strain, can be easily accomplished through a quick protocol. |
id |
UNSP_3fea51a03dcd21a5cd2e362e3b185d60 |
---|---|
oai_identifier_str |
oai:repositorio.unesp.br:11449/246154 |
network_acronym_str |
UNSP |
network_name_str |
Repositório Institucional da UNESP |
repository_id_str |
2946 |
spelling |
EasyGuide Plasmids Support in Vivo Assembly of gRNAs for CRISPR/Cas9 Applications in Saccharomyces cerevisiaeCRISPR/Cas9EasyGuide plasmidsgenome editinggRNA cloningin vivo cloningSaccharomyces cerevisiaeMost CRISPR/Cas9 applications in yeast rely on a plasmid-based expression of Cas9 and its guide RNA (gRNA) containing a 20-nucleotides (nts) spacer tailored to each genomic target. The lengthy assembly of this customized gRNA requires at least 3-5 days for its precloning in Escherichia coli, purification, validation, and cotransformation with Cas9 into a yeast strain. Here, we constructed a series of 12 EasyGuide plasmids to simplify CRISPR/Cas9 applications in Saccharomyces cerevisiae. The new vectors provide templates for generating PCR fragments that can assemble up to six functional gRNAs directly into yeasts via homologous recombination between the 20-nts spacers. By dispensing precloning in E. coli, yeast in vivo gRNA assembly significantly reduces the CRISPR/Cas9 experimental workload. A highly efficient yeast genome editing procedure, involving PCR amplification of gRNAs and donors, followed by their transformation into a Cas9-expressing strain, can be easily accomplished through a quick protocol.Institute for Bioenergy Research Sao Paulo State University, São PauloPh.D. Program in Bioenergy Sao Paulo State University, São PauloGenetics and Molecular Biology Graduate Program Institute of Biology University of CampinasSENAI Innovation Institute for BiotechnologyInstitute for Bioenergy Research Sao Paulo State University, São PauloPh.D. Program in Bioenergy Sao Paulo State University, São PauloUniversidade Estadual Paulista (UNESP)Universidade Estadual de Campinas (UNICAMP)Innovation Institute for BiotechnologyJacobus, Ana P. [UNESP]Barreto, Joneclei A. [UNESP]De Bem, Lucas S. [UNESP]Menegon, Yasmine A. [UNESP]Fier, ÍcaroBueno, João G. R.Dos Santos, Leandro V.Gross, Jeferson [UNESP]2023-07-29T12:33:13Z2023-07-29T12:33:13Z2022-11-18info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article3886-3891http://dx.doi.org/10.1021/acssynbio.2c00348ACS Synthetic Biology, v. 11, n. 11, p. 3886-3891, 2022.2161-5063http://hdl.handle.net/11449/24615410.1021/acssynbio.2c003482-s2.0-85140578486Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengACS Synthetic Biologyinfo:eu-repo/semantics/openAccess2023-07-29T12:33:13Zoai:repositorio.unesp.br:11449/246154Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestrepositoriounesp@unesp.bropendoar:29462023-07-29T12:33:13Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
EasyGuide Plasmids Support in Vivo Assembly of gRNAs for CRISPR/Cas9 Applications in Saccharomyces cerevisiae |
title |
EasyGuide Plasmids Support in Vivo Assembly of gRNAs for CRISPR/Cas9 Applications in Saccharomyces cerevisiae |
spellingShingle |
EasyGuide Plasmids Support in Vivo Assembly of gRNAs for CRISPR/Cas9 Applications in Saccharomyces cerevisiae Jacobus, Ana P. [UNESP] CRISPR/Cas9 EasyGuide plasmids genome editing gRNA cloning in vivo cloning Saccharomyces cerevisiae |
title_short |
EasyGuide Plasmids Support in Vivo Assembly of gRNAs for CRISPR/Cas9 Applications in Saccharomyces cerevisiae |
title_full |
EasyGuide Plasmids Support in Vivo Assembly of gRNAs for CRISPR/Cas9 Applications in Saccharomyces cerevisiae |
title_fullStr |
EasyGuide Plasmids Support in Vivo Assembly of gRNAs for CRISPR/Cas9 Applications in Saccharomyces cerevisiae |
title_full_unstemmed |
EasyGuide Plasmids Support in Vivo Assembly of gRNAs for CRISPR/Cas9 Applications in Saccharomyces cerevisiae |
title_sort |
EasyGuide Plasmids Support in Vivo Assembly of gRNAs for CRISPR/Cas9 Applications in Saccharomyces cerevisiae |
author |
Jacobus, Ana P. [UNESP] |
author_facet |
Jacobus, Ana P. [UNESP] Barreto, Joneclei A. [UNESP] De Bem, Lucas S. [UNESP] Menegon, Yasmine A. [UNESP] Fier, Ícaro Bueno, João G. R. Dos Santos, Leandro V. Gross, Jeferson [UNESP] |
author_role |
author |
author2 |
Barreto, Joneclei A. [UNESP] De Bem, Lucas S. [UNESP] Menegon, Yasmine A. [UNESP] Fier, Ícaro Bueno, João G. R. Dos Santos, Leandro V. Gross, Jeferson [UNESP] |
author2_role |
author author author author author author author |
dc.contributor.none.fl_str_mv |
Universidade Estadual Paulista (UNESP) Universidade Estadual de Campinas (UNICAMP) Innovation Institute for Biotechnology |
dc.contributor.author.fl_str_mv |
Jacobus, Ana P. [UNESP] Barreto, Joneclei A. [UNESP] De Bem, Lucas S. [UNESP] Menegon, Yasmine A. [UNESP] Fier, Ícaro Bueno, João G. R. Dos Santos, Leandro V. Gross, Jeferson [UNESP] |
dc.subject.por.fl_str_mv |
CRISPR/Cas9 EasyGuide plasmids genome editing gRNA cloning in vivo cloning Saccharomyces cerevisiae |
topic |
CRISPR/Cas9 EasyGuide plasmids genome editing gRNA cloning in vivo cloning Saccharomyces cerevisiae |
description |
Most CRISPR/Cas9 applications in yeast rely on a plasmid-based expression of Cas9 and its guide RNA (gRNA) containing a 20-nucleotides (nts) spacer tailored to each genomic target. The lengthy assembly of this customized gRNA requires at least 3-5 days for its precloning in Escherichia coli, purification, validation, and cotransformation with Cas9 into a yeast strain. Here, we constructed a series of 12 EasyGuide plasmids to simplify CRISPR/Cas9 applications in Saccharomyces cerevisiae. The new vectors provide templates for generating PCR fragments that can assemble up to six functional gRNAs directly into yeasts via homologous recombination between the 20-nts spacers. By dispensing precloning in E. coli, yeast in vivo gRNA assembly significantly reduces the CRISPR/Cas9 experimental workload. A highly efficient yeast genome editing procedure, involving PCR amplification of gRNAs and donors, followed by their transformation into a Cas9-expressing strain, can be easily accomplished through a quick protocol. |
publishDate |
2022 |
dc.date.none.fl_str_mv |
2022-11-18 2023-07-29T12:33:13Z 2023-07-29T12:33:13Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1021/acssynbio.2c00348 ACS Synthetic Biology, v. 11, n. 11, p. 3886-3891, 2022. 2161-5063 http://hdl.handle.net/11449/246154 10.1021/acssynbio.2c00348 2-s2.0-85140578486 |
url |
http://dx.doi.org/10.1021/acssynbio.2c00348 http://hdl.handle.net/11449/246154 |
identifier_str_mv |
ACS Synthetic Biology, v. 11, n. 11, p. 3886-3891, 2022. 2161-5063 10.1021/acssynbio.2c00348 2-s2.0-85140578486 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
ACS Synthetic Biology |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
3886-3891 |
dc.source.none.fl_str_mv |
Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
repositoriounesp@unesp.br |
_version_ |
1826303630971502592 |