Genome-Wide Mapping of Loci Explaining Variance in Scrotal Circumference in Nellore Cattle

Detalhes bibliográficos
Autor(a) principal: Utsunomiya, Yuri T. [UNESP]
Data de Publicação: 2014
Outros Autores: Carmo, Adriana S. [UNESP], Neves, Haroldo H. R. [UNESP], Carvalheiro, Roberto [UNESP], Matos, Marcia C. [UNESP], Zavarez, Ludmilla B. [UNESP], Ito, Pier K. R. K. [UNESP], O'Brien, Ana M. Perez, Soelkner, Johann, Porto-Neto, Laercio R., Schenkel, Flavio S., McEwan, John, Cole, John B., Silva, Marcos V. G. B. da, Van Tassell, Curtis P., Sonstegard, Tad S., Garcia, José Fernando [UNESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1371/journal.pone.0088561
http://hdl.handle.net/11449/112401
Resumo: The reproductive performance of bulls has a high impact on the beef cattle industry. Scrotal circumference (SC) is the most recorded reproductive trait in beef herds, and is used as a major selection criterion to improve precocity and fertility. The characterization of genomic regions affecting SC can contribute to the identification of diagnostic markers for reproductive performance and uncover molecular mechanisms underlying complex aspects of bovine reproductive biology. In this paper, we report a genome-wide scan for chromosome segments explaining differences in SC, using data of 861 Nellore bulls (Bos indicus) genotyped for over 777,000 single nucleotide polymorphisms. Loci that excel from the genome background were identified on chromosomes 4, 6, 7, 10, 14, 18 and 21. The majority of these regions were previously found to be associated with reproductive and body size traits in cattle. The signal on chromosome 14 replicates the pleiotropic quantitative trait locus encompassing PLAG1 that affects male fertility in cattle and stature in several species. Based on intensive literature mining, SP4, MAGEL2, SH3RF2, PDE5A and SNAI2 are proposed as novel candidate genes for SC, as they affect growth and testicular size in other animal models. These findings contribute to linking reproductive phenotypes to gene functions, and may offer new insights on the molecular biology of male fertility.
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spelling Genome-Wide Mapping of Loci Explaining Variance in Scrotal Circumference in Nellore CattleThe reproductive performance of bulls has a high impact on the beef cattle industry. Scrotal circumference (SC) is the most recorded reproductive trait in beef herds, and is used as a major selection criterion to improve precocity and fertility. The characterization of genomic regions affecting SC can contribute to the identification of diagnostic markers for reproductive performance and uncover molecular mechanisms underlying complex aspects of bovine reproductive biology. In this paper, we report a genome-wide scan for chromosome segments explaining differences in SC, using data of 861 Nellore bulls (Bos indicus) genotyped for over 777,000 single nucleotide polymorphisms. Loci that excel from the genome background were identified on chromosomes 4, 6, 7, 10, 14, 18 and 21. The majority of these regions were previously found to be associated with reproductive and body size traits in cattle. The signal on chromosome 14 replicates the pleiotropic quantitative trait locus encompassing PLAG1 that affects male fertility in cattle and stature in several species. Based on intensive literature mining, SP4, MAGEL2, SH3RF2, PDE5A and SNAI2 are proposed as novel candidate genes for SC, as they affect growth and testicular size in other animal models. These findings contribute to linking reproductive phenotypes to gene functions, and may offer new insights on the molecular biology of male fertility.Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)UNESP Univ Estadual Paulista, Fac Ciencias Agr & Vet, Dept Med Vet Prevent & Reprod Anim, Sao Paulo, BrazilUNESP Univ Estadual Paulista, Dept Zootecnia, Sao Paulo, BrazilGenSys Consultores Associados, Porto Alegre, RS, BrazilUNESP Univ Estadual Paulista, Fac Med Vet Aracatuba, Dept Apoio Saude & Prod Anim, Sao Paulo, BrazilBOKU Univ Nat Resources & Life Sci, Div Livestock Sci, Dept Sustainable Agr Syst, Vienna, AustriaCSIRO Commonwealth Sci & Ind Res Org, Food Futures Flagship, Brisbane, Qld, AustraliaUniv Guelph, Ctr Genet Improvement Livestock, Guelph, ON N1G 2W1, CanadaAgResearch, Ctr Reprod & Genom, Mosgiel, Otago, New ZealandARS, Anim Improvement Programs Lab, USDA, Beltsville, MD USAEmbrapa Dairy Cattle, Bioinformat & Anim Genom Lab, Juiz De Fora, MG, BrazilARS, Bovine Funct Genom Lab, USDA, Beltsville, MD USAUNESP Univ Estadual Paulista, Fac Ciencias Agr & Vet, Dept Med Vet Prevent & Reprod Anim, Sao Paulo, BrazilUNESP Univ Estadual Paulista, Dept Zootecnia, Sao Paulo, BrazilUNESP Univ Estadual Paulista, Fac Med Vet Aracatuba, Dept Apoio Saude & Prod Anim, Sao Paulo, BrazilCNPq: 560922/2010-8CNPq: 483590/2010-0FAPESP: 11/16643-2FAPESP: 10/52030-2Public Library ScienceUniversidade Estadual Paulista (Unesp)GenSys Consultores AssociadosBOKU Univ Nat Resources & Life SciCSIRO Commonwealth Sci & Ind Res OrgUniversity of GuelphAgResearchARSEmpresa Brasileira de Pesquisa Agropecuária (EMBRAPA)Utsunomiya, Yuri T. [UNESP]Carmo, Adriana S. [UNESP]Neves, Haroldo H. R. [UNESP]Carvalheiro, Roberto [UNESP]Matos, Marcia C. [UNESP]Zavarez, Ludmilla B. [UNESP]Ito, Pier K. R. K. [UNESP]O'Brien, Ana M. PerezSoelkner, JohannPorto-Neto, Laercio R.Schenkel, Flavio S.McEwan, JohnCole, John B.Silva, Marcos V. G. B. daVan Tassell, Curtis P.Sonstegard, Tad S.Garcia, José Fernando [UNESP]2014-12-03T13:10:41Z2014-12-03T13:10:41Z2014-02-18info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article9application/pdfhttp://dx.doi.org/10.1371/journal.pone.0088561Plos One. San Francisco: Public Library Science, v. 9, n. 2, 9 p., 2014.1932-6203http://hdl.handle.net/11449/11240110.1371/journal.pone.0088561WOS:000331706700046WOS000331706700046.pdf9991374083045897Web of Sciencereponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengPLOS ONE2.7661,164info:eu-repo/semantics/openAccess2024-09-04T19:15:25Zoai:repositorio.unesp.br:11449/112401Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestrepositoriounesp@unesp.bropendoar:29462024-09-04T19:15:25Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Genome-Wide Mapping of Loci Explaining Variance in Scrotal Circumference in Nellore Cattle
title Genome-Wide Mapping of Loci Explaining Variance in Scrotal Circumference in Nellore Cattle
spellingShingle Genome-Wide Mapping of Loci Explaining Variance in Scrotal Circumference in Nellore Cattle
Utsunomiya, Yuri T. [UNESP]
title_short Genome-Wide Mapping of Loci Explaining Variance in Scrotal Circumference in Nellore Cattle
title_full Genome-Wide Mapping of Loci Explaining Variance in Scrotal Circumference in Nellore Cattle
title_fullStr Genome-Wide Mapping of Loci Explaining Variance in Scrotal Circumference in Nellore Cattle
title_full_unstemmed Genome-Wide Mapping of Loci Explaining Variance in Scrotal Circumference in Nellore Cattle
title_sort Genome-Wide Mapping of Loci Explaining Variance in Scrotal Circumference in Nellore Cattle
author Utsunomiya, Yuri T. [UNESP]
author_facet Utsunomiya, Yuri T. [UNESP]
Carmo, Adriana S. [UNESP]
Neves, Haroldo H. R. [UNESP]
Carvalheiro, Roberto [UNESP]
Matos, Marcia C. [UNESP]
Zavarez, Ludmilla B. [UNESP]
Ito, Pier K. R. K. [UNESP]
O'Brien, Ana M. Perez
Soelkner, Johann
Porto-Neto, Laercio R.
Schenkel, Flavio S.
McEwan, John
Cole, John B.
Silva, Marcos V. G. B. da
Van Tassell, Curtis P.
Sonstegard, Tad S.
Garcia, José Fernando [UNESP]
author_role author
author2 Carmo, Adriana S. [UNESP]
Neves, Haroldo H. R. [UNESP]
Carvalheiro, Roberto [UNESP]
Matos, Marcia C. [UNESP]
Zavarez, Ludmilla B. [UNESP]
Ito, Pier K. R. K. [UNESP]
O'Brien, Ana M. Perez
Soelkner, Johann
Porto-Neto, Laercio R.
Schenkel, Flavio S.
McEwan, John
Cole, John B.
Silva, Marcos V. G. B. da
Van Tassell, Curtis P.
Sonstegard, Tad S.
Garcia, José Fernando [UNESP]
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (Unesp)
GenSys Consultores Associados
BOKU Univ Nat Resources & Life Sci
CSIRO Commonwealth Sci & Ind Res Org
University of Guelph
AgResearch
ARS
Empresa Brasileira de Pesquisa Agropecuária (EMBRAPA)
dc.contributor.author.fl_str_mv Utsunomiya, Yuri T. [UNESP]
Carmo, Adriana S. [UNESP]
Neves, Haroldo H. R. [UNESP]
Carvalheiro, Roberto [UNESP]
Matos, Marcia C. [UNESP]
Zavarez, Ludmilla B. [UNESP]
Ito, Pier K. R. K. [UNESP]
O'Brien, Ana M. Perez
Soelkner, Johann
Porto-Neto, Laercio R.
Schenkel, Flavio S.
McEwan, John
Cole, John B.
Silva, Marcos V. G. B. da
Van Tassell, Curtis P.
Sonstegard, Tad S.
Garcia, José Fernando [UNESP]
description The reproductive performance of bulls has a high impact on the beef cattle industry. Scrotal circumference (SC) is the most recorded reproductive trait in beef herds, and is used as a major selection criterion to improve precocity and fertility. The characterization of genomic regions affecting SC can contribute to the identification of diagnostic markers for reproductive performance and uncover molecular mechanisms underlying complex aspects of bovine reproductive biology. In this paper, we report a genome-wide scan for chromosome segments explaining differences in SC, using data of 861 Nellore bulls (Bos indicus) genotyped for over 777,000 single nucleotide polymorphisms. Loci that excel from the genome background were identified on chromosomes 4, 6, 7, 10, 14, 18 and 21. The majority of these regions were previously found to be associated with reproductive and body size traits in cattle. The signal on chromosome 14 replicates the pleiotropic quantitative trait locus encompassing PLAG1 that affects male fertility in cattle and stature in several species. Based on intensive literature mining, SP4, MAGEL2, SH3RF2, PDE5A and SNAI2 are proposed as novel candidate genes for SC, as they affect growth and testicular size in other animal models. These findings contribute to linking reproductive phenotypes to gene functions, and may offer new insights on the molecular biology of male fertility.
publishDate 2014
dc.date.none.fl_str_mv 2014-12-03T13:10:41Z
2014-12-03T13:10:41Z
2014-02-18
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1371/journal.pone.0088561
Plos One. San Francisco: Public Library Science, v. 9, n. 2, 9 p., 2014.
1932-6203
http://hdl.handle.net/11449/112401
10.1371/journal.pone.0088561
WOS:000331706700046
WOS000331706700046.pdf
9991374083045897
url http://dx.doi.org/10.1371/journal.pone.0088561
http://hdl.handle.net/11449/112401
identifier_str_mv Plos One. San Francisco: Public Library Science, v. 9, n. 2, 9 p., 2014.
1932-6203
10.1371/journal.pone.0088561
WOS:000331706700046
WOS000331706700046.pdf
9991374083045897
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv PLOS ONE
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application/pdf
dc.publisher.none.fl_str_mv Public Library Science
publisher.none.fl_str_mv Public Library Science
dc.source.none.fl_str_mv Web of Science
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
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reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv repositoriounesp@unesp.br
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