Genome-Wide Mapping of Loci Explaining Variance in Scrotal Circumference in Nellore Cattle
Autor(a) principal: | |
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Data de Publicação: | 2014 |
Outros Autores: | , , , , , , , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.1371/journal.pone.0088561 http://hdl.handle.net/11449/112401 |
Resumo: | The reproductive performance of bulls has a high impact on the beef cattle industry. Scrotal circumference (SC) is the most recorded reproductive trait in beef herds, and is used as a major selection criterion to improve precocity and fertility. The characterization of genomic regions affecting SC can contribute to the identification of diagnostic markers for reproductive performance and uncover molecular mechanisms underlying complex aspects of bovine reproductive biology. In this paper, we report a genome-wide scan for chromosome segments explaining differences in SC, using data of 861 Nellore bulls (Bos indicus) genotyped for over 777,000 single nucleotide polymorphisms. Loci that excel from the genome background were identified on chromosomes 4, 6, 7, 10, 14, 18 and 21. The majority of these regions were previously found to be associated with reproductive and body size traits in cattle. The signal on chromosome 14 replicates the pleiotropic quantitative trait locus encompassing PLAG1 that affects male fertility in cattle and stature in several species. Based on intensive literature mining, SP4, MAGEL2, SH3RF2, PDE5A and SNAI2 are proposed as novel candidate genes for SC, as they affect growth and testicular size in other animal models. These findings contribute to linking reproductive phenotypes to gene functions, and may offer new insights on the molecular biology of male fertility. |
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Genome-Wide Mapping of Loci Explaining Variance in Scrotal Circumference in Nellore CattleThe reproductive performance of bulls has a high impact on the beef cattle industry. Scrotal circumference (SC) is the most recorded reproductive trait in beef herds, and is used as a major selection criterion to improve precocity and fertility. The characterization of genomic regions affecting SC can contribute to the identification of diagnostic markers for reproductive performance and uncover molecular mechanisms underlying complex aspects of bovine reproductive biology. In this paper, we report a genome-wide scan for chromosome segments explaining differences in SC, using data of 861 Nellore bulls (Bos indicus) genotyped for over 777,000 single nucleotide polymorphisms. Loci that excel from the genome background were identified on chromosomes 4, 6, 7, 10, 14, 18 and 21. The majority of these regions were previously found to be associated with reproductive and body size traits in cattle. The signal on chromosome 14 replicates the pleiotropic quantitative trait locus encompassing PLAG1 that affects male fertility in cattle and stature in several species. Based on intensive literature mining, SP4, MAGEL2, SH3RF2, PDE5A and SNAI2 are proposed as novel candidate genes for SC, as they affect growth and testicular size in other animal models. These findings contribute to linking reproductive phenotypes to gene functions, and may offer new insights on the molecular biology of male fertility.Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)UNESP Univ Estadual Paulista, Fac Ciencias Agr & Vet, Dept Med Vet Prevent & Reprod Anim, Sao Paulo, BrazilUNESP Univ Estadual Paulista, Dept Zootecnia, Sao Paulo, BrazilGenSys Consultores Associados, Porto Alegre, RS, BrazilUNESP Univ Estadual Paulista, Fac Med Vet Aracatuba, Dept Apoio Saude & Prod Anim, Sao Paulo, BrazilBOKU Univ Nat Resources & Life Sci, Div Livestock Sci, Dept Sustainable Agr Syst, Vienna, AustriaCSIRO Commonwealth Sci & Ind Res Org, Food Futures Flagship, Brisbane, Qld, AustraliaUniv Guelph, Ctr Genet Improvement Livestock, Guelph, ON N1G 2W1, CanadaAgResearch, Ctr Reprod & Genom, Mosgiel, Otago, New ZealandARS, Anim Improvement Programs Lab, USDA, Beltsville, MD USAEmbrapa Dairy Cattle, Bioinformat & Anim Genom Lab, Juiz De Fora, MG, BrazilARS, Bovine Funct Genom Lab, USDA, Beltsville, MD USAUNESP Univ Estadual Paulista, Fac Ciencias Agr & Vet, Dept Med Vet Prevent & Reprod Anim, Sao Paulo, BrazilUNESP Univ Estadual Paulista, Dept Zootecnia, Sao Paulo, BrazilUNESP Univ Estadual Paulista, Fac Med Vet Aracatuba, Dept Apoio Saude & Prod Anim, Sao Paulo, BrazilCNPq: 560922/2010-8CNPq: 483590/2010-0FAPESP: 11/16643-2FAPESP: 10/52030-2Public Library ScienceUniversidade Estadual Paulista (Unesp)GenSys Consultores AssociadosBOKU Univ Nat Resources & Life SciCSIRO Commonwealth Sci & Ind Res OrgUniversity of GuelphAgResearchARSEmpresa Brasileira de Pesquisa Agropecuária (EMBRAPA)Utsunomiya, Yuri T. [UNESP]Carmo, Adriana S. [UNESP]Neves, Haroldo H. R. [UNESP]Carvalheiro, Roberto [UNESP]Matos, Marcia C. [UNESP]Zavarez, Ludmilla B. [UNESP]Ito, Pier K. R. K. [UNESP]O'Brien, Ana M. PerezSoelkner, JohannPorto-Neto, Laercio R.Schenkel, Flavio S.McEwan, JohnCole, John B.Silva, Marcos V. G. B. daVan Tassell, Curtis P.Sonstegard, Tad S.Garcia, José Fernando [UNESP]2014-12-03T13:10:41Z2014-12-03T13:10:41Z2014-02-18info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article9application/pdfhttp://dx.doi.org/10.1371/journal.pone.0088561Plos One. San Francisco: Public Library Science, v. 9, n. 2, 9 p., 2014.1932-6203http://hdl.handle.net/11449/11240110.1371/journal.pone.0088561WOS:000331706700046WOS000331706700046.pdf9991374083045897Web of Sciencereponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengPLOS ONE2.7661,164info:eu-repo/semantics/openAccess2024-09-04T19:15:25Zoai:repositorio.unesp.br:11449/112401Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestrepositoriounesp@unesp.bropendoar:29462024-09-04T19:15:25Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Genome-Wide Mapping of Loci Explaining Variance in Scrotal Circumference in Nellore Cattle |
title |
Genome-Wide Mapping of Loci Explaining Variance in Scrotal Circumference in Nellore Cattle |
spellingShingle |
Genome-Wide Mapping of Loci Explaining Variance in Scrotal Circumference in Nellore Cattle Utsunomiya, Yuri T. [UNESP] |
title_short |
Genome-Wide Mapping of Loci Explaining Variance in Scrotal Circumference in Nellore Cattle |
title_full |
Genome-Wide Mapping of Loci Explaining Variance in Scrotal Circumference in Nellore Cattle |
title_fullStr |
Genome-Wide Mapping of Loci Explaining Variance in Scrotal Circumference in Nellore Cattle |
title_full_unstemmed |
Genome-Wide Mapping of Loci Explaining Variance in Scrotal Circumference in Nellore Cattle |
title_sort |
Genome-Wide Mapping of Loci Explaining Variance in Scrotal Circumference in Nellore Cattle |
author |
Utsunomiya, Yuri T. [UNESP] |
author_facet |
Utsunomiya, Yuri T. [UNESP] Carmo, Adriana S. [UNESP] Neves, Haroldo H. R. [UNESP] Carvalheiro, Roberto [UNESP] Matos, Marcia C. [UNESP] Zavarez, Ludmilla B. [UNESP] Ito, Pier K. R. K. [UNESP] O'Brien, Ana M. Perez Soelkner, Johann Porto-Neto, Laercio R. Schenkel, Flavio S. McEwan, John Cole, John B. Silva, Marcos V. G. B. da Van Tassell, Curtis P. Sonstegard, Tad S. Garcia, José Fernando [UNESP] |
author_role |
author |
author2 |
Carmo, Adriana S. [UNESP] Neves, Haroldo H. R. [UNESP] Carvalheiro, Roberto [UNESP] Matos, Marcia C. [UNESP] Zavarez, Ludmilla B. [UNESP] Ito, Pier K. R. K. [UNESP] O'Brien, Ana M. Perez Soelkner, Johann Porto-Neto, Laercio R. Schenkel, Flavio S. McEwan, John Cole, John B. Silva, Marcos V. G. B. da Van Tassell, Curtis P. Sonstegard, Tad S. Garcia, José Fernando [UNESP] |
author2_role |
author author author author author author author author author author author author author author author author |
dc.contributor.none.fl_str_mv |
Universidade Estadual Paulista (Unesp) GenSys Consultores Associados BOKU Univ Nat Resources & Life Sci CSIRO Commonwealth Sci & Ind Res Org University of Guelph AgResearch ARS Empresa Brasileira de Pesquisa Agropecuária (EMBRAPA) |
dc.contributor.author.fl_str_mv |
Utsunomiya, Yuri T. [UNESP] Carmo, Adriana S. [UNESP] Neves, Haroldo H. R. [UNESP] Carvalheiro, Roberto [UNESP] Matos, Marcia C. [UNESP] Zavarez, Ludmilla B. [UNESP] Ito, Pier K. R. K. [UNESP] O'Brien, Ana M. Perez Soelkner, Johann Porto-Neto, Laercio R. Schenkel, Flavio S. McEwan, John Cole, John B. Silva, Marcos V. G. B. da Van Tassell, Curtis P. Sonstegard, Tad S. Garcia, José Fernando [UNESP] |
description |
The reproductive performance of bulls has a high impact on the beef cattle industry. Scrotal circumference (SC) is the most recorded reproductive trait in beef herds, and is used as a major selection criterion to improve precocity and fertility. The characterization of genomic regions affecting SC can contribute to the identification of diagnostic markers for reproductive performance and uncover molecular mechanisms underlying complex aspects of bovine reproductive biology. In this paper, we report a genome-wide scan for chromosome segments explaining differences in SC, using data of 861 Nellore bulls (Bos indicus) genotyped for over 777,000 single nucleotide polymorphisms. Loci that excel from the genome background were identified on chromosomes 4, 6, 7, 10, 14, 18 and 21. The majority of these regions were previously found to be associated with reproductive and body size traits in cattle. The signal on chromosome 14 replicates the pleiotropic quantitative trait locus encompassing PLAG1 that affects male fertility in cattle and stature in several species. Based on intensive literature mining, SP4, MAGEL2, SH3RF2, PDE5A and SNAI2 are proposed as novel candidate genes for SC, as they affect growth and testicular size in other animal models. These findings contribute to linking reproductive phenotypes to gene functions, and may offer new insights on the molecular biology of male fertility. |
publishDate |
2014 |
dc.date.none.fl_str_mv |
2014-12-03T13:10:41Z 2014-12-03T13:10:41Z 2014-02-18 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1371/journal.pone.0088561 Plos One. San Francisco: Public Library Science, v. 9, n. 2, 9 p., 2014. 1932-6203 http://hdl.handle.net/11449/112401 10.1371/journal.pone.0088561 WOS:000331706700046 WOS000331706700046.pdf 9991374083045897 |
url |
http://dx.doi.org/10.1371/journal.pone.0088561 http://hdl.handle.net/11449/112401 |
identifier_str_mv |
Plos One. San Francisco: Public Library Science, v. 9, n. 2, 9 p., 2014. 1932-6203 10.1371/journal.pone.0088561 WOS:000331706700046 WOS000331706700046.pdf 9991374083045897 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
PLOS ONE 2.766 1,164 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
9 application/pdf |
dc.publisher.none.fl_str_mv |
Public Library Science |
publisher.none.fl_str_mv |
Public Library Science |
dc.source.none.fl_str_mv |
Web of Science reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
repositoriounesp@unesp.br |
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1810021379613917184 |