Phylogenetic relationships among genera Eucalyptus and Corymbia species based on rnDNA internal transcribed spacers sequences

Detalhes bibliográficos
Autor(a) principal: De Araújo, Elaine Sandra Nicolini Nabuco [UNESP]
Data de Publicação: 2002
Outros Autores: Gimenes, Marcos Aparecido [UNESP], Lopes, Catalina Romero [UNESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://www.ipef.br/publicacoes/scientia/nr62/cap07.pdf
http://hdl.handle.net/11449/67114
Resumo: Phylogenetio relationships between Eucalyptus species, subgenus Symphyomyrtus (sections Adnataria, Exsertaria, Maldenaria, and Transversaria), and Corymbia species (sections Politaria and Ocharia) were established based on the sequence of Internal transcribed rDNA spacers (ITS1 and ITS2). The species analyzed were obtained from a collection kept in Brazil. Fragments obtained using primers ITS1 and ITS2 were sequenced and part of the sequence of ITS1 and ITS2 and the complete sequence of 5.8S rDNA were used in the analysis. ITSs and 5.8S rDNA sequences from E. globulus ssp. globulus and A. bakeri (Genus Angophora) were downloaded from the Genbank database and included in the analysis. Psidlum guajava was the selected outgroup used. The sequence alignment and a Neighbor-joining tree were obtained using Clustal X. Few variations were detected in the 5.8S rDNA sequences obtained, occurring mainly between Eucalyptus and Corymbia, thus defining these genera. Variations in ITS sequences occurred in all investigated species. Phylogenetic analysis showed a clear separation between the genera Corymbia and Eucalyptus. A bakeri was more closely related to species belonging to genus Corymbia. Regarding the subgenus Symphyomyrtus (Genus Eucalyptus), only species from section Maidenaria grouped together according to their common section. This could have been caused by the removal of natural reproductive barriers when these species were introduced In Brazil, with a consequent Increase in the rate of interspecific crossings and Introgression events.
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spelling Phylogenetic relationships among genera Eucalyptus and Corymbia species based on rnDNA internal transcribed spacers sequencesCorymbiaEucalyptusITSMolecular PhylogenyrnDNADNAForestryPlants (botany)Molecular phylogenyWoodNucleic AcidsTreesPhylogenetio relationships between Eucalyptus species, subgenus Symphyomyrtus (sections Adnataria, Exsertaria, Maldenaria, and Transversaria), and Corymbia species (sections Politaria and Ocharia) were established based on the sequence of Internal transcribed rDNA spacers (ITS1 and ITS2). The species analyzed were obtained from a collection kept in Brazil. Fragments obtained using primers ITS1 and ITS2 were sequenced and part of the sequence of ITS1 and ITS2 and the complete sequence of 5.8S rDNA were used in the analysis. ITSs and 5.8S rDNA sequences from E. globulus ssp. globulus and A. bakeri (Genus Angophora) were downloaded from the Genbank database and included in the analysis. Psidlum guajava was the selected outgroup used. The sequence alignment and a Neighbor-joining tree were obtained using Clustal X. Few variations were detected in the 5.8S rDNA sequences obtained, occurring mainly between Eucalyptus and Corymbia, thus defining these genera. Variations in ITS sequences occurred in all investigated species. Phylogenetic analysis showed a clear separation between the genera Corymbia and Eucalyptus. A bakeri was more closely related to species belonging to genus Corymbia. Regarding the subgenus Symphyomyrtus (Genus Eucalyptus), only species from section Maidenaria grouped together according to their common section. This could have been caused by the removal of natural reproductive barriers when these species were introduced In Brazil, with a consequent Increase in the rate of interspecific crossings and Introgression events.Departamento de Genética Institute de Biociências UNESP, Botucatu, SP - 18603-970Departamento de Genética Institute de Biociências UNESP, Botucatu, SP - 18603-970Universidade Estadual Paulista (Unesp)De Araújo, Elaine Sandra Nicolini Nabuco [UNESP]Gimenes, Marcos Aparecido [UNESP]Lopes, Catalina Romero [UNESP]2014-05-27T11:20:34Z2014-05-27T11:20:34Z2002-12-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article75-85application/pdfhttp://www.ipef.br/publicacoes/scientia/nr62/cap07.pdfScientia Forestalis/Forest Sciences, n. 62, p. 75-85, 2002.1413-9324http://hdl.handle.net/11449/671142-s2.0-00381884612-s2.0-0038188461.pdf6903215575686010Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengScientia Forestalis/Forest Sciences0.5000,495info:eu-repo/semantics/openAccess2024-01-26T06:28:40Zoai:repositorio.unesp.br:11449/67114Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-06T00:00:04.105988Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Phylogenetic relationships among genera Eucalyptus and Corymbia species based on rnDNA internal transcribed spacers sequences
title Phylogenetic relationships among genera Eucalyptus and Corymbia species based on rnDNA internal transcribed spacers sequences
spellingShingle Phylogenetic relationships among genera Eucalyptus and Corymbia species based on rnDNA internal transcribed spacers sequences
De Araújo, Elaine Sandra Nicolini Nabuco [UNESP]
Corymbia
Eucalyptus
ITS
Molecular Phylogeny
rnDNA
DNA
Forestry
Plants (botany)
Molecular phylogeny
Wood
Nucleic Acids
Trees
title_short Phylogenetic relationships among genera Eucalyptus and Corymbia species based on rnDNA internal transcribed spacers sequences
title_full Phylogenetic relationships among genera Eucalyptus and Corymbia species based on rnDNA internal transcribed spacers sequences
title_fullStr Phylogenetic relationships among genera Eucalyptus and Corymbia species based on rnDNA internal transcribed spacers sequences
title_full_unstemmed Phylogenetic relationships among genera Eucalyptus and Corymbia species based on rnDNA internal transcribed spacers sequences
title_sort Phylogenetic relationships among genera Eucalyptus and Corymbia species based on rnDNA internal transcribed spacers sequences
author De Araújo, Elaine Sandra Nicolini Nabuco [UNESP]
author_facet De Araújo, Elaine Sandra Nicolini Nabuco [UNESP]
Gimenes, Marcos Aparecido [UNESP]
Lopes, Catalina Romero [UNESP]
author_role author
author2 Gimenes, Marcos Aparecido [UNESP]
Lopes, Catalina Romero [UNESP]
author2_role author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (Unesp)
dc.contributor.author.fl_str_mv De Araújo, Elaine Sandra Nicolini Nabuco [UNESP]
Gimenes, Marcos Aparecido [UNESP]
Lopes, Catalina Romero [UNESP]
dc.subject.por.fl_str_mv Corymbia
Eucalyptus
ITS
Molecular Phylogeny
rnDNA
DNA
Forestry
Plants (botany)
Molecular phylogeny
Wood
Nucleic Acids
Trees
topic Corymbia
Eucalyptus
ITS
Molecular Phylogeny
rnDNA
DNA
Forestry
Plants (botany)
Molecular phylogeny
Wood
Nucleic Acids
Trees
description Phylogenetio relationships between Eucalyptus species, subgenus Symphyomyrtus (sections Adnataria, Exsertaria, Maldenaria, and Transversaria), and Corymbia species (sections Politaria and Ocharia) were established based on the sequence of Internal transcribed rDNA spacers (ITS1 and ITS2). The species analyzed were obtained from a collection kept in Brazil. Fragments obtained using primers ITS1 and ITS2 were sequenced and part of the sequence of ITS1 and ITS2 and the complete sequence of 5.8S rDNA were used in the analysis. ITSs and 5.8S rDNA sequences from E. globulus ssp. globulus and A. bakeri (Genus Angophora) were downloaded from the Genbank database and included in the analysis. Psidlum guajava was the selected outgroup used. The sequence alignment and a Neighbor-joining tree were obtained using Clustal X. Few variations were detected in the 5.8S rDNA sequences obtained, occurring mainly between Eucalyptus and Corymbia, thus defining these genera. Variations in ITS sequences occurred in all investigated species. Phylogenetic analysis showed a clear separation between the genera Corymbia and Eucalyptus. A bakeri was more closely related to species belonging to genus Corymbia. Regarding the subgenus Symphyomyrtus (Genus Eucalyptus), only species from section Maidenaria grouped together according to their common section. This could have been caused by the removal of natural reproductive barriers when these species were introduced In Brazil, with a consequent Increase in the rate of interspecific crossings and Introgression events.
publishDate 2002
dc.date.none.fl_str_mv 2002-12-01
2014-05-27T11:20:34Z
2014-05-27T11:20:34Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://www.ipef.br/publicacoes/scientia/nr62/cap07.pdf
Scientia Forestalis/Forest Sciences, n. 62, p. 75-85, 2002.
1413-9324
http://hdl.handle.net/11449/67114
2-s2.0-0038188461
2-s2.0-0038188461.pdf
6903215575686010
url http://www.ipef.br/publicacoes/scientia/nr62/cap07.pdf
http://hdl.handle.net/11449/67114
identifier_str_mv Scientia Forestalis/Forest Sciences, n. 62, p. 75-85, 2002.
1413-9324
2-s2.0-0038188461
2-s2.0-0038188461.pdf
6903215575686010
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Scientia Forestalis/Forest Sciences
0.500
0,495
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 75-85
application/pdf
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
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