Identification of potential molecular pathogenesis mechanisms modulated by microRNAs in patients with Intestinal Neuronal Dysplasia type B

Detalhes bibliográficos
Autor(a) principal: Angelini, Marcos C. [UNESP]
Data de Publicação: 2019
Outros Autores: Silva, Alana Maia e. [UNESP], Felix, Tainara F. [UNESP], Lapa, Rainer M. L., Terra, Simone A. [UNESP], Rodrigues, Maria A. M. [UNESP], Ortolan, Erika V. P. [UNESP], Reis, Patricia P. [UNESP], Lourenção, Pedro L. T. A. [UNESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1038/s41598-019-54245-4
http://hdl.handle.net/11449/199725
Resumo: This study proposed to determine global microRNA (miRNA) expression and miRNA-regulated pathways in Intestinal Neuronal Dysplasia type B (IND-B). Fifty patients (0–15 years old) with IND-B were included in the study. Peripheral blood samples were collected from all 50 patients and from 10 healthy asymptomatic children (controls). Rectal biopsies were collected from 29/50 patients; biopsy tissues were needle microdissected to isolate the different intestinal layers, for molecular analysis. Global miRNA expression was determined using TaqMan arrays. Correlation analysis between miRNA expression in plasma and biopsy samples as well as among tissues derived from the distinct intestinal layers was performed. Computational approaches were used for miRNA target prediction/identification of miRNA-regulated genes and enriched pathways biologically relevant to IND-B pathogenesis. miRNAs were statistically significantly deregulated (FC ≥ 2 and p ≤ 0.05) in submucosal and muscular layers: over-expressed (miR-146a and miR-146b) and under-expressed (miR-99a, miR-100, miR-130a, miR-133b, miR-145, miR-365, miR-374-5p, miR-451). Notably, let-7a-5p was highly over-expressed in patient plasma compared to healthy controls (FC = 17.4). In addition, miR-451 was significantly under-expressed in both plasma and all biopsy tissues from the same patients. Enriched pathways (p < 0.01) were axon guidance, nerve growth factor signalling, NCAM signalling for neurite out-growth, neuronal system and apoptosis. miRNA expression is deregulated in the submucosa and muscular layers of the rectum and detected in plasma from patients with IND-B. Biologically enriched pathways regulated by the identified miRNAs may play a role in IND-B disease pathogenesis, due to the activity related to the neurons of the enteric nervous system.
id UNSP_47d42e4e353ba1b11d6a85133ac7b1f0
oai_identifier_str oai:repositorio.unesp.br:11449/199725
network_acronym_str UNSP
network_name_str Repositório Institucional da UNESP
repository_id_str 2946
spelling Identification of potential molecular pathogenesis mechanisms modulated by microRNAs in patients with Intestinal Neuronal Dysplasia type BThis study proposed to determine global microRNA (miRNA) expression and miRNA-regulated pathways in Intestinal Neuronal Dysplasia type B (IND-B). Fifty patients (0–15 years old) with IND-B were included in the study. Peripheral blood samples were collected from all 50 patients and from 10 healthy asymptomatic children (controls). Rectal biopsies were collected from 29/50 patients; biopsy tissues were needle microdissected to isolate the different intestinal layers, for molecular analysis. Global miRNA expression was determined using TaqMan arrays. Correlation analysis between miRNA expression in plasma and biopsy samples as well as among tissues derived from the distinct intestinal layers was performed. Computational approaches were used for miRNA target prediction/identification of miRNA-regulated genes and enriched pathways biologically relevant to IND-B pathogenesis. miRNAs were statistically significantly deregulated (FC ≥ 2 and p ≤ 0.05) in submucosal and muscular layers: over-expressed (miR-146a and miR-146b) and under-expressed (miR-99a, miR-100, miR-130a, miR-133b, miR-145, miR-365, miR-374-5p, miR-451). Notably, let-7a-5p was highly over-expressed in patient plasma compared to healthy controls (FC = 17.4). In addition, miR-451 was significantly under-expressed in both plasma and all biopsy tissues from the same patients. Enriched pathways (p < 0.01) were axon guidance, nerve growth factor signalling, NCAM signalling for neurite out-growth, neuronal system and apoptosis. miRNA expression is deregulated in the submucosa and muscular layers of the rectum and detected in plasma from patients with IND-B. Biologically enriched pathways regulated by the identified miRNAs may play a role in IND-B disease pathogenesis, due to the activity related to the neurons of the enteric nervous system.Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)UNESP - São Paulo State University Faculty of Medicine Department of Surgery and OrthopedicsUNESP - São Paulo State University Faculty of Medicine Experimental Research Unity (UNIPEX)Institute of Livestock and Biotechnology Laboratory of Molecular Physiology Toribio Rodriguez de Mendoza National UniversityUNESP - São Paulo State University Faculty of Medicine Department of PathologyUNESP - São Paulo State University Faculty of Medicine Department of Surgery and OrthopedicsUNESP - São Paulo State University Faculty of Medicine Experimental Research Unity (UNIPEX)UNESP - São Paulo State University Faculty of Medicine Department of PathologyFAPESP: 2015/03664-2Universidade Estadual Paulista (Unesp)Toribio Rodriguez de Mendoza National UniversityAngelini, Marcos C. [UNESP]Silva, Alana Maia e. [UNESP]Felix, Tainara F. [UNESP]Lapa, Rainer M. L.Terra, Simone A. [UNESP]Rodrigues, Maria A. M. [UNESP]Ortolan, Erika V. P. [UNESP]Reis, Patricia P. [UNESP]Lourenção, Pedro L. T. A. [UNESP]2020-12-12T01:47:38Z2020-12-12T01:47:38Z2019-12-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1038/s41598-019-54245-4Scientific Reports, v. 9, n. 1, 2019.2045-2322http://hdl.handle.net/11449/19972510.1038/s41598-019-54245-42-s2.0-85075677600Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengScientific Reportsinfo:eu-repo/semantics/openAccess2021-10-23T09:13:51Zoai:repositorio.unesp.br:11449/199725Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462021-10-23T09:13:51Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Identification of potential molecular pathogenesis mechanisms modulated by microRNAs in patients with Intestinal Neuronal Dysplasia type B
title Identification of potential molecular pathogenesis mechanisms modulated by microRNAs in patients with Intestinal Neuronal Dysplasia type B
spellingShingle Identification of potential molecular pathogenesis mechanisms modulated by microRNAs in patients with Intestinal Neuronal Dysplasia type B
Angelini, Marcos C. [UNESP]
title_short Identification of potential molecular pathogenesis mechanisms modulated by microRNAs in patients with Intestinal Neuronal Dysplasia type B
title_full Identification of potential molecular pathogenesis mechanisms modulated by microRNAs in patients with Intestinal Neuronal Dysplasia type B
title_fullStr Identification of potential molecular pathogenesis mechanisms modulated by microRNAs in patients with Intestinal Neuronal Dysplasia type B
title_full_unstemmed Identification of potential molecular pathogenesis mechanisms modulated by microRNAs in patients with Intestinal Neuronal Dysplasia type B
title_sort Identification of potential molecular pathogenesis mechanisms modulated by microRNAs in patients with Intestinal Neuronal Dysplasia type B
author Angelini, Marcos C. [UNESP]
author_facet Angelini, Marcos C. [UNESP]
Silva, Alana Maia e. [UNESP]
Felix, Tainara F. [UNESP]
Lapa, Rainer M. L.
Terra, Simone A. [UNESP]
Rodrigues, Maria A. M. [UNESP]
Ortolan, Erika V. P. [UNESP]
Reis, Patricia P. [UNESP]
Lourenção, Pedro L. T. A. [UNESP]
author_role author
author2 Silva, Alana Maia e. [UNESP]
Felix, Tainara F. [UNESP]
Lapa, Rainer M. L.
Terra, Simone A. [UNESP]
Rodrigues, Maria A. M. [UNESP]
Ortolan, Erika V. P. [UNESP]
Reis, Patricia P. [UNESP]
Lourenção, Pedro L. T. A. [UNESP]
author2_role author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (Unesp)
Toribio Rodriguez de Mendoza National University
dc.contributor.author.fl_str_mv Angelini, Marcos C. [UNESP]
Silva, Alana Maia e. [UNESP]
Felix, Tainara F. [UNESP]
Lapa, Rainer M. L.
Terra, Simone A. [UNESP]
Rodrigues, Maria A. M. [UNESP]
Ortolan, Erika V. P. [UNESP]
Reis, Patricia P. [UNESP]
Lourenção, Pedro L. T. A. [UNESP]
description This study proposed to determine global microRNA (miRNA) expression and miRNA-regulated pathways in Intestinal Neuronal Dysplasia type B (IND-B). Fifty patients (0–15 years old) with IND-B were included in the study. Peripheral blood samples were collected from all 50 patients and from 10 healthy asymptomatic children (controls). Rectal biopsies were collected from 29/50 patients; biopsy tissues were needle microdissected to isolate the different intestinal layers, for molecular analysis. Global miRNA expression was determined using TaqMan arrays. Correlation analysis between miRNA expression in plasma and biopsy samples as well as among tissues derived from the distinct intestinal layers was performed. Computational approaches were used for miRNA target prediction/identification of miRNA-regulated genes and enriched pathways biologically relevant to IND-B pathogenesis. miRNAs were statistically significantly deregulated (FC ≥ 2 and p ≤ 0.05) in submucosal and muscular layers: over-expressed (miR-146a and miR-146b) and under-expressed (miR-99a, miR-100, miR-130a, miR-133b, miR-145, miR-365, miR-374-5p, miR-451). Notably, let-7a-5p was highly over-expressed in patient plasma compared to healthy controls (FC = 17.4). In addition, miR-451 was significantly under-expressed in both plasma and all biopsy tissues from the same patients. Enriched pathways (p < 0.01) were axon guidance, nerve growth factor signalling, NCAM signalling for neurite out-growth, neuronal system and apoptosis. miRNA expression is deregulated in the submucosa and muscular layers of the rectum and detected in plasma from patients with IND-B. Biologically enriched pathways regulated by the identified miRNAs may play a role in IND-B disease pathogenesis, due to the activity related to the neurons of the enteric nervous system.
publishDate 2019
dc.date.none.fl_str_mv 2019-12-01
2020-12-12T01:47:38Z
2020-12-12T01:47:38Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1038/s41598-019-54245-4
Scientific Reports, v. 9, n. 1, 2019.
2045-2322
http://hdl.handle.net/11449/199725
10.1038/s41598-019-54245-4
2-s2.0-85075677600
url http://dx.doi.org/10.1038/s41598-019-54245-4
http://hdl.handle.net/11449/199725
identifier_str_mv Scientific Reports, v. 9, n. 1, 2019.
2045-2322
10.1038/s41598-019-54245-4
2-s2.0-85075677600
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Scientific Reports
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
_version_ 1799964994761129984