Antimicrobial Peptide Arsenal Predicted from the Venom Gland Transcriptome of the Tropical Trap-Jaw Ant Odontomachus chelifer
Autor(a) principal: | |
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Data de Publicação: | 2023 |
Outros Autores: | , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.3390/toxins15050345 http://hdl.handle.net/11449/247453 |
Resumo: | With about 13,000 known species, ants are the most abundant venomous insects. Their venom consists of polypeptides, enzymes, alkaloids, biogenic amines, formic acid, and hydrocarbons. In this study, we investigated, using in silico techniques, the peptides composing a putative antimicrobial arsenal from the venom gland of the neotropical trap-jaw ant Odontomachus chelifer. Focusing on transcripts from the body and venom gland of this insect, it was possible to determine the gland secretome, which contained about 1022 peptides with putative signal peptides. The majority of these peptides (75.5%) were unknown, not matching any reference database, motivating us to extract functional insights via machine learning-based techniques. With several complementary methodologies, we investigated the existence of antimicrobial peptides (AMPs) in the venom gland of O. chelifer, finding 112 non-redundant candidates. Candidate AMPs were predicted to be more globular and hemolytic than the remaining peptides in the secretome. There is evidence of transcription for 97% of AMP candidates across the same ant genus, with one of them also verified as translated, thus supporting our findings. Most of these potential antimicrobial sequences (94.8%) matched transcripts from the ant’s body, indicating their role not solely as venom toxins. |
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Antimicrobial Peptide Arsenal Predicted from the Venom Gland Transcriptome of the Tropical Trap-Jaw Ant Odontomachus cheliferantimicrobial peptidesneotropical antsprospection of peptidesstinging antsvenom peptidesvenomous antsWith about 13,000 known species, ants are the most abundant venomous insects. Their venom consists of polypeptides, enzymes, alkaloids, biogenic amines, formic acid, and hydrocarbons. In this study, we investigated, using in silico techniques, the peptides composing a putative antimicrobial arsenal from the venom gland of the neotropical trap-jaw ant Odontomachus chelifer. Focusing on transcripts from the body and venom gland of this insect, it was possible to determine the gland secretome, which contained about 1022 peptides with putative signal peptides. The majority of these peptides (75.5%) were unknown, not matching any reference database, motivating us to extract functional insights via machine learning-based techniques. With several complementary methodologies, we investigated the existence of antimicrobial peptides (AMPs) in the venom gland of O. chelifer, finding 112 non-redundant candidates. Candidate AMPs were predicted to be more globular and hemolytic than the remaining peptides in the secretome. There is evidence of transcription for 97% of AMP candidates across the same ant genus, with one of them also verified as translated, thus supporting our findings. Most of these potential antimicrobial sequences (94.8%) matched transcripts from the ant’s body, indicating their role not solely as venom toxins.Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Laboratory of Molecular Biology Department of Genetics and Evolution Federal University of São Carlos (UFSCar), Rodovia Washington Luis, Km 235, SPDepartment of General and Applied Biology Institute of Biosciences São Paulo State University (UNESP), SPLaboratory of Biochemistry and Animal Toxins Institute of Biotechnology Federal University of Uber-lândia (UFU), MGBig Data Biology Laboratory Institute of Science and Technology for Brain-Inspired Intelligence Fudan UniversityDepartment of General and Applied Biology Institute of Biosciences São Paulo State University (UNESP), SPCNPq: CNPq 142046/2022-1CNPq: CNPq 315618/2021-3Universidade Federal de São Carlos (UFSCar)Universidade Estadual Paulista (UNESP)Federal University of Uber-lândia (UFU)Fudan UniversityMenk, Josilene J.Matuhara, Yan E.Sebestyen-França, HenriqueHenrique-Silva, FlávioFerro, Milene [UNESP]Rodrigues, Renata S.Santos-Júnior, Célio D.2023-07-29T13:16:26Z2023-07-29T13:16:26Z2023-05-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.3390/toxins15050345Toxins, v. 15, n. 5, 2023.2072-6651http://hdl.handle.net/11449/24745310.3390/toxins150503452-s2.0-85160318293Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengToxinsinfo:eu-repo/semantics/openAccess2023-07-29T13:16:26Zoai:repositorio.unesp.br:11449/247453Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-06T00:10:22.229151Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Antimicrobial Peptide Arsenal Predicted from the Venom Gland Transcriptome of the Tropical Trap-Jaw Ant Odontomachus chelifer |
title |
Antimicrobial Peptide Arsenal Predicted from the Venom Gland Transcriptome of the Tropical Trap-Jaw Ant Odontomachus chelifer |
spellingShingle |
Antimicrobial Peptide Arsenal Predicted from the Venom Gland Transcriptome of the Tropical Trap-Jaw Ant Odontomachus chelifer Menk, Josilene J. antimicrobial peptides neotropical ants prospection of peptides stinging ants venom peptides venomous ants |
title_short |
Antimicrobial Peptide Arsenal Predicted from the Venom Gland Transcriptome of the Tropical Trap-Jaw Ant Odontomachus chelifer |
title_full |
Antimicrobial Peptide Arsenal Predicted from the Venom Gland Transcriptome of the Tropical Trap-Jaw Ant Odontomachus chelifer |
title_fullStr |
Antimicrobial Peptide Arsenal Predicted from the Venom Gland Transcriptome of the Tropical Trap-Jaw Ant Odontomachus chelifer |
title_full_unstemmed |
Antimicrobial Peptide Arsenal Predicted from the Venom Gland Transcriptome of the Tropical Trap-Jaw Ant Odontomachus chelifer |
title_sort |
Antimicrobial Peptide Arsenal Predicted from the Venom Gland Transcriptome of the Tropical Trap-Jaw Ant Odontomachus chelifer |
author |
Menk, Josilene J. |
author_facet |
Menk, Josilene J. Matuhara, Yan E. Sebestyen-França, Henrique Henrique-Silva, Flávio Ferro, Milene [UNESP] Rodrigues, Renata S. Santos-Júnior, Célio D. |
author_role |
author |
author2 |
Matuhara, Yan E. Sebestyen-França, Henrique Henrique-Silva, Flávio Ferro, Milene [UNESP] Rodrigues, Renata S. Santos-Júnior, Célio D. |
author2_role |
author author author author author author |
dc.contributor.none.fl_str_mv |
Universidade Federal de São Carlos (UFSCar) Universidade Estadual Paulista (UNESP) Federal University of Uber-lândia (UFU) Fudan University |
dc.contributor.author.fl_str_mv |
Menk, Josilene J. Matuhara, Yan E. Sebestyen-França, Henrique Henrique-Silva, Flávio Ferro, Milene [UNESP] Rodrigues, Renata S. Santos-Júnior, Célio D. |
dc.subject.por.fl_str_mv |
antimicrobial peptides neotropical ants prospection of peptides stinging ants venom peptides venomous ants |
topic |
antimicrobial peptides neotropical ants prospection of peptides stinging ants venom peptides venomous ants |
description |
With about 13,000 known species, ants are the most abundant venomous insects. Their venom consists of polypeptides, enzymes, alkaloids, biogenic amines, formic acid, and hydrocarbons. In this study, we investigated, using in silico techniques, the peptides composing a putative antimicrobial arsenal from the venom gland of the neotropical trap-jaw ant Odontomachus chelifer. Focusing on transcripts from the body and venom gland of this insect, it was possible to determine the gland secretome, which contained about 1022 peptides with putative signal peptides. The majority of these peptides (75.5%) were unknown, not matching any reference database, motivating us to extract functional insights via machine learning-based techniques. With several complementary methodologies, we investigated the existence of antimicrobial peptides (AMPs) in the venom gland of O. chelifer, finding 112 non-redundant candidates. Candidate AMPs were predicted to be more globular and hemolytic than the remaining peptides in the secretome. There is evidence of transcription for 97% of AMP candidates across the same ant genus, with one of them also verified as translated, thus supporting our findings. Most of these potential antimicrobial sequences (94.8%) matched transcripts from the ant’s body, indicating their role not solely as venom toxins. |
publishDate |
2023 |
dc.date.none.fl_str_mv |
2023-07-29T13:16:26Z 2023-07-29T13:16:26Z 2023-05-01 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.3390/toxins15050345 Toxins, v. 15, n. 5, 2023. 2072-6651 http://hdl.handle.net/11449/247453 10.3390/toxins15050345 2-s2.0-85160318293 |
url |
http://dx.doi.org/10.3390/toxins15050345 http://hdl.handle.net/11449/247453 |
identifier_str_mv |
Toxins, v. 15, n. 5, 2023. 2072-6651 10.3390/toxins15050345 2-s2.0-85160318293 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Toxins |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.source.none.fl_str_mv |
Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
|
_version_ |
1808129591945986048 |