Antimicrobial Peptide Arsenal Predicted from the Venom Gland Transcriptome of the Tropical Trap-Jaw Ant Odontomachus chelifer

Detalhes bibliográficos
Autor(a) principal: Menk, Josilene J.
Data de Publicação: 2023
Outros Autores: Matuhara, Yan E., Sebestyen-França, Henrique, Henrique-Silva, Flávio, Ferro, Milene [UNESP], Rodrigues, Renata S., Santos-Júnior, Célio D.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.3390/toxins15050345
http://hdl.handle.net/11449/247453
Resumo: With about 13,000 known species, ants are the most abundant venomous insects. Their venom consists of polypeptides, enzymes, alkaloids, biogenic amines, formic acid, and hydrocarbons. In this study, we investigated, using in silico techniques, the peptides composing a putative antimicrobial arsenal from the venom gland of the neotropical trap-jaw ant Odontomachus chelifer. Focusing on transcripts from the body and venom gland of this insect, it was possible to determine the gland secretome, which contained about 1022 peptides with putative signal peptides. The majority of these peptides (75.5%) were unknown, not matching any reference database, motivating us to extract functional insights via machine learning-based techniques. With several complementary methodologies, we investigated the existence of antimicrobial peptides (AMPs) in the venom gland of O. chelifer, finding 112 non-redundant candidates. Candidate AMPs were predicted to be more globular and hemolytic than the remaining peptides in the secretome. There is evidence of transcription for 97% of AMP candidates across the same ant genus, with one of them also verified as translated, thus supporting our findings. Most of these potential antimicrobial sequences (94.8%) matched transcripts from the ant’s body, indicating their role not solely as venom toxins.
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spelling Antimicrobial Peptide Arsenal Predicted from the Venom Gland Transcriptome of the Tropical Trap-Jaw Ant Odontomachus cheliferantimicrobial peptidesneotropical antsprospection of peptidesstinging antsvenom peptidesvenomous antsWith about 13,000 known species, ants are the most abundant venomous insects. Their venom consists of polypeptides, enzymes, alkaloids, biogenic amines, formic acid, and hydrocarbons. In this study, we investigated, using in silico techniques, the peptides composing a putative antimicrobial arsenal from the venom gland of the neotropical trap-jaw ant Odontomachus chelifer. Focusing on transcripts from the body and venom gland of this insect, it was possible to determine the gland secretome, which contained about 1022 peptides with putative signal peptides. The majority of these peptides (75.5%) were unknown, not matching any reference database, motivating us to extract functional insights via machine learning-based techniques. With several complementary methodologies, we investigated the existence of antimicrobial peptides (AMPs) in the venom gland of O. chelifer, finding 112 non-redundant candidates. Candidate AMPs were predicted to be more globular and hemolytic than the remaining peptides in the secretome. There is evidence of transcription for 97% of AMP candidates across the same ant genus, with one of them also verified as translated, thus supporting our findings. Most of these potential antimicrobial sequences (94.8%) matched transcripts from the ant’s body, indicating their role not solely as venom toxins.Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Laboratory of Molecular Biology Department of Genetics and Evolution Federal University of São Carlos (UFSCar), Rodovia Washington Luis, Km 235, SPDepartment of General and Applied Biology Institute of Biosciences São Paulo State University (UNESP), SPLaboratory of Biochemistry and Animal Toxins Institute of Biotechnology Federal University of Uber-lândia (UFU), MGBig Data Biology Laboratory Institute of Science and Technology for Brain-Inspired Intelligence Fudan UniversityDepartment of General and Applied Biology Institute of Biosciences São Paulo State University (UNESP), SPCNPq: CNPq 142046/2022-1CNPq: CNPq 315618/2021-3Universidade Federal de São Carlos (UFSCar)Universidade Estadual Paulista (UNESP)Federal University of Uber-lândia (UFU)Fudan UniversityMenk, Josilene J.Matuhara, Yan E.Sebestyen-França, HenriqueHenrique-Silva, FlávioFerro, Milene [UNESP]Rodrigues, Renata S.Santos-Júnior, Célio D.2023-07-29T13:16:26Z2023-07-29T13:16:26Z2023-05-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.3390/toxins15050345Toxins, v. 15, n. 5, 2023.2072-6651http://hdl.handle.net/11449/24745310.3390/toxins150503452-s2.0-85160318293Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengToxinsinfo:eu-repo/semantics/openAccess2023-07-29T13:16:26Zoai:repositorio.unesp.br:11449/247453Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-06T00:10:22.229151Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Antimicrobial Peptide Arsenal Predicted from the Venom Gland Transcriptome of the Tropical Trap-Jaw Ant Odontomachus chelifer
title Antimicrobial Peptide Arsenal Predicted from the Venom Gland Transcriptome of the Tropical Trap-Jaw Ant Odontomachus chelifer
spellingShingle Antimicrobial Peptide Arsenal Predicted from the Venom Gland Transcriptome of the Tropical Trap-Jaw Ant Odontomachus chelifer
Menk, Josilene J.
antimicrobial peptides
neotropical ants
prospection of peptides
stinging ants
venom peptides
venomous ants
title_short Antimicrobial Peptide Arsenal Predicted from the Venom Gland Transcriptome of the Tropical Trap-Jaw Ant Odontomachus chelifer
title_full Antimicrobial Peptide Arsenal Predicted from the Venom Gland Transcriptome of the Tropical Trap-Jaw Ant Odontomachus chelifer
title_fullStr Antimicrobial Peptide Arsenal Predicted from the Venom Gland Transcriptome of the Tropical Trap-Jaw Ant Odontomachus chelifer
title_full_unstemmed Antimicrobial Peptide Arsenal Predicted from the Venom Gland Transcriptome of the Tropical Trap-Jaw Ant Odontomachus chelifer
title_sort Antimicrobial Peptide Arsenal Predicted from the Venom Gland Transcriptome of the Tropical Trap-Jaw Ant Odontomachus chelifer
author Menk, Josilene J.
author_facet Menk, Josilene J.
Matuhara, Yan E.
Sebestyen-França, Henrique
Henrique-Silva, Flávio
Ferro, Milene [UNESP]
Rodrigues, Renata S.
Santos-Júnior, Célio D.
author_role author
author2 Matuhara, Yan E.
Sebestyen-França, Henrique
Henrique-Silva, Flávio
Ferro, Milene [UNESP]
Rodrigues, Renata S.
Santos-Júnior, Célio D.
author2_role author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Federal de São Carlos (UFSCar)
Universidade Estadual Paulista (UNESP)
Federal University of Uber-lândia (UFU)
Fudan University
dc.contributor.author.fl_str_mv Menk, Josilene J.
Matuhara, Yan E.
Sebestyen-França, Henrique
Henrique-Silva, Flávio
Ferro, Milene [UNESP]
Rodrigues, Renata S.
Santos-Júnior, Célio D.
dc.subject.por.fl_str_mv antimicrobial peptides
neotropical ants
prospection of peptides
stinging ants
venom peptides
venomous ants
topic antimicrobial peptides
neotropical ants
prospection of peptides
stinging ants
venom peptides
venomous ants
description With about 13,000 known species, ants are the most abundant venomous insects. Their venom consists of polypeptides, enzymes, alkaloids, biogenic amines, formic acid, and hydrocarbons. In this study, we investigated, using in silico techniques, the peptides composing a putative antimicrobial arsenal from the venom gland of the neotropical trap-jaw ant Odontomachus chelifer. Focusing on transcripts from the body and venom gland of this insect, it was possible to determine the gland secretome, which contained about 1022 peptides with putative signal peptides. The majority of these peptides (75.5%) were unknown, not matching any reference database, motivating us to extract functional insights via machine learning-based techniques. With several complementary methodologies, we investigated the existence of antimicrobial peptides (AMPs) in the venom gland of O. chelifer, finding 112 non-redundant candidates. Candidate AMPs were predicted to be more globular and hemolytic than the remaining peptides in the secretome. There is evidence of transcription for 97% of AMP candidates across the same ant genus, with one of them also verified as translated, thus supporting our findings. Most of these potential antimicrobial sequences (94.8%) matched transcripts from the ant’s body, indicating their role not solely as venom toxins.
publishDate 2023
dc.date.none.fl_str_mv 2023-07-29T13:16:26Z
2023-07-29T13:16:26Z
2023-05-01
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.3390/toxins15050345
Toxins, v. 15, n. 5, 2023.
2072-6651
http://hdl.handle.net/11449/247453
10.3390/toxins15050345
2-s2.0-85160318293
url http://dx.doi.org/10.3390/toxins15050345
http://hdl.handle.net/11449/247453
identifier_str_mv Toxins, v. 15, n. 5, 2023.
2072-6651
10.3390/toxins15050345
2-s2.0-85160318293
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Toxins
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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