Structural and functional diversity of asparaginases: Overview and recommendations for a revised nomenclature
Autor(a) principal: | |
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Data de Publicação: | 2021 |
Outros Autores: | , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.1002/bab.2127 http://hdl.handle.net/11449/206099 |
Resumo: | Asparaginases (ASNases) are a large and structurally diverse group of enzymes ubiquitous amongst archaea, bacteria and eukaryotes, that catalyze hydrolysis of asparagine to aspartate and ammonia. Bacterial ASNases are important biopharmaceuticals for the treatment of acute lymphoblastic leukemia, although some patients experience adverse allergic side effects during treatment with these protein therapeutics. ASNases are currently divided into three families: plant-type ASNases, Rhizobium etli-type ASNases and bacterial-type ASNases. This system is outdated as both bacterial-type and plant-type families also include archaeal, bacterial and eukaryotic enzymes, each with their own distinct characteristics. Herein, phylogenetic studies allied to tertiary structural analyses are described with the aim of proposing a revised and more robust classification system that considers the biochemical diversity of ASNases. Accordingly, based on distinct peptide domains, phylogenetic data, structural analysis and functional characteristics, we recommend that ASNases now be divided into three new distinct classes containing subgroups according to structural and functional aspects. Using this new classification scheme, 25 ASNases were identified as candidates for future new lead discovery. |
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Structural and functional diversity of asparaginases: Overview and recommendations for a revised nomenclaturebiopharmaceuticalsbioprospectingclassificationenzyme diversityl-asparaginasephylogenyAsparaginases (ASNases) are a large and structurally diverse group of enzymes ubiquitous amongst archaea, bacteria and eukaryotes, that catalyze hydrolysis of asparagine to aspartate and ammonia. Bacterial ASNases are important biopharmaceuticals for the treatment of acute lymphoblastic leukemia, although some patients experience adverse allergic side effects during treatment with these protein therapeutics. ASNases are currently divided into three families: plant-type ASNases, Rhizobium etli-type ASNases and bacterial-type ASNases. This system is outdated as both bacterial-type and plant-type families also include archaeal, bacterial and eukaryotic enzymes, each with their own distinct characteristics. Herein, phylogenetic studies allied to tertiary structural analyses are described with the aim of proposing a revised and more robust classification system that considers the biochemical diversity of ASNases. Accordingly, based on distinct peptide domains, phylogenetic data, structural analysis and functional characteristics, we recommend that ASNases now be divided into three new distinct classes containing subgroups according to structural and functional aspects. Using this new classification scheme, 25 ASNases were identified as candidates for future new lead discovery.Instituto de Biociências Universidade Estadual Paulista (UNESP)Institute of Pharmaceutical Science School of Cancer & Pharmaceutical Sciences Faculty of Life Sciences & Medicine King's College LondonDepartamento de Tecnologia Tecnologia Bioquímico-Farmacêuticas Faculdade de Ciencias Farmaceuticas Universidade de São PauloInstituto de Biociências Universidade Estadual Paulista (UNESP)Universidade Estadual Paulista (Unesp)King's College LondonUniversidade de São Paulo (USP)da Silva, Leonardo Schultz [UNESP]Doonan, Liam B.Pessoa, Adalbertode Oliveira, Marcos Antonio [UNESP]Long, Paul F.2021-06-25T10:26:34Z2021-06-25T10:26:34Z2021-01-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1002/bab.2127Biotechnology and Applied Biochemistry.1470-87440885-4513http://hdl.handle.net/11449/20609910.1002/bab.21272-s2.0-85103085102Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengBiotechnology and Applied Biochemistryinfo:eu-repo/semantics/openAccess2021-10-22T20:56:30Zoai:repositorio.unesp.br:11449/206099Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T18:15:54.512959Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Structural and functional diversity of asparaginases: Overview and recommendations for a revised nomenclature |
title |
Structural and functional diversity of asparaginases: Overview and recommendations for a revised nomenclature |
spellingShingle |
Structural and functional diversity of asparaginases: Overview and recommendations for a revised nomenclature da Silva, Leonardo Schultz [UNESP] biopharmaceuticals bioprospecting classification enzyme diversity l-asparaginase phylogeny |
title_short |
Structural and functional diversity of asparaginases: Overview and recommendations for a revised nomenclature |
title_full |
Structural and functional diversity of asparaginases: Overview and recommendations for a revised nomenclature |
title_fullStr |
Structural and functional diversity of asparaginases: Overview and recommendations for a revised nomenclature |
title_full_unstemmed |
Structural and functional diversity of asparaginases: Overview and recommendations for a revised nomenclature |
title_sort |
Structural and functional diversity of asparaginases: Overview and recommendations for a revised nomenclature |
author |
da Silva, Leonardo Schultz [UNESP] |
author_facet |
da Silva, Leonardo Schultz [UNESP] Doonan, Liam B. Pessoa, Adalberto de Oliveira, Marcos Antonio [UNESP] Long, Paul F. |
author_role |
author |
author2 |
Doonan, Liam B. Pessoa, Adalberto de Oliveira, Marcos Antonio [UNESP] Long, Paul F. |
author2_role |
author author author author |
dc.contributor.none.fl_str_mv |
Universidade Estadual Paulista (Unesp) King's College London Universidade de São Paulo (USP) |
dc.contributor.author.fl_str_mv |
da Silva, Leonardo Schultz [UNESP] Doonan, Liam B. Pessoa, Adalberto de Oliveira, Marcos Antonio [UNESP] Long, Paul F. |
dc.subject.por.fl_str_mv |
biopharmaceuticals bioprospecting classification enzyme diversity l-asparaginase phylogeny |
topic |
biopharmaceuticals bioprospecting classification enzyme diversity l-asparaginase phylogeny |
description |
Asparaginases (ASNases) are a large and structurally diverse group of enzymes ubiquitous amongst archaea, bacteria and eukaryotes, that catalyze hydrolysis of asparagine to aspartate and ammonia. Bacterial ASNases are important biopharmaceuticals for the treatment of acute lymphoblastic leukemia, although some patients experience adverse allergic side effects during treatment with these protein therapeutics. ASNases are currently divided into three families: plant-type ASNases, Rhizobium etli-type ASNases and bacterial-type ASNases. This system is outdated as both bacterial-type and plant-type families also include archaeal, bacterial and eukaryotic enzymes, each with their own distinct characteristics. Herein, phylogenetic studies allied to tertiary structural analyses are described with the aim of proposing a revised and more robust classification system that considers the biochemical diversity of ASNases. Accordingly, based on distinct peptide domains, phylogenetic data, structural analysis and functional characteristics, we recommend that ASNases now be divided into three new distinct classes containing subgroups according to structural and functional aspects. Using this new classification scheme, 25 ASNases were identified as candidates for future new lead discovery. |
publishDate |
2021 |
dc.date.none.fl_str_mv |
2021-06-25T10:26:34Z 2021-06-25T10:26:34Z 2021-01-01 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1002/bab.2127 Biotechnology and Applied Biochemistry. 1470-8744 0885-4513 http://hdl.handle.net/11449/206099 10.1002/bab.2127 2-s2.0-85103085102 |
url |
http://dx.doi.org/10.1002/bab.2127 http://hdl.handle.net/11449/206099 |
identifier_str_mv |
Biotechnology and Applied Biochemistry. 1470-8744 0885-4513 10.1002/bab.2127 2-s2.0-85103085102 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Biotechnology and Applied Biochemistry |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.source.none.fl_str_mv |
Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
|
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1808128913428185088 |