Structural and functional diversity of asparaginases: Overview and recommendations for a revised nomenclature

Detalhes bibliográficos
Autor(a) principal: da Silva, Leonardo Schultz [UNESP]
Data de Publicação: 2021
Outros Autores: Doonan, Liam B., Pessoa, Adalberto, de Oliveira, Marcos Antonio [UNESP], Long, Paul F.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1002/bab.2127
http://hdl.handle.net/11449/206099
Resumo: Asparaginases (ASNases) are a large and structurally diverse group of enzymes ubiquitous amongst archaea, bacteria and eukaryotes, that catalyze hydrolysis of asparagine to aspartate and ammonia. Bacterial ASNases are important biopharmaceuticals for the treatment of acute lymphoblastic leukemia, although some patients experience adverse allergic side effects during treatment with these protein therapeutics. ASNases are currently divided into three families: plant-type ASNases, Rhizobium etli-type ASNases and bacterial-type ASNases. This system is outdated as both bacterial-type and plant-type families also include archaeal, bacterial and eukaryotic enzymes, each with their own distinct characteristics. Herein, phylogenetic studies allied to tertiary structural analyses are described with the aim of proposing a revised and more robust classification system that considers the biochemical diversity of ASNases. Accordingly, based on distinct peptide domains, phylogenetic data, structural analysis and functional characteristics, we recommend that ASNases now be divided into three new distinct classes containing subgroups according to structural and functional aspects. Using this new classification scheme, 25 ASNases were identified as candidates for future new lead discovery.
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spelling Structural and functional diversity of asparaginases: Overview and recommendations for a revised nomenclaturebiopharmaceuticalsbioprospectingclassificationenzyme diversityl-asparaginasephylogenyAsparaginases (ASNases) are a large and structurally diverse group of enzymes ubiquitous amongst archaea, bacteria and eukaryotes, that catalyze hydrolysis of asparagine to aspartate and ammonia. Bacterial ASNases are important biopharmaceuticals for the treatment of acute lymphoblastic leukemia, although some patients experience adverse allergic side effects during treatment with these protein therapeutics. ASNases are currently divided into three families: plant-type ASNases, Rhizobium etli-type ASNases and bacterial-type ASNases. This system is outdated as both bacterial-type and plant-type families also include archaeal, bacterial and eukaryotic enzymes, each with their own distinct characteristics. Herein, phylogenetic studies allied to tertiary structural analyses are described with the aim of proposing a revised and more robust classification system that considers the biochemical diversity of ASNases. Accordingly, based on distinct peptide domains, phylogenetic data, structural analysis and functional characteristics, we recommend that ASNases now be divided into three new distinct classes containing subgroups according to structural and functional aspects. Using this new classification scheme, 25 ASNases were identified as candidates for future new lead discovery.Instituto de Biociências Universidade Estadual Paulista (UNESP)Institute of Pharmaceutical Science School of Cancer & Pharmaceutical Sciences Faculty of Life Sciences & Medicine King's College LondonDepartamento de Tecnologia Tecnologia Bioquímico-Farmacêuticas Faculdade de Ciencias Farmaceuticas Universidade de São PauloInstituto de Biociências Universidade Estadual Paulista (UNESP)Universidade Estadual Paulista (Unesp)King's College LondonUniversidade de São Paulo (USP)da Silva, Leonardo Schultz [UNESP]Doonan, Liam B.Pessoa, Adalbertode Oliveira, Marcos Antonio [UNESP]Long, Paul F.2021-06-25T10:26:34Z2021-06-25T10:26:34Z2021-01-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1002/bab.2127Biotechnology and Applied Biochemistry.1470-87440885-4513http://hdl.handle.net/11449/20609910.1002/bab.21272-s2.0-85103085102Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengBiotechnology and Applied Biochemistryinfo:eu-repo/semantics/openAccess2021-10-22T20:56:30Zoai:repositorio.unesp.br:11449/206099Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T18:15:54.512959Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Structural and functional diversity of asparaginases: Overview and recommendations for a revised nomenclature
title Structural and functional diversity of asparaginases: Overview and recommendations for a revised nomenclature
spellingShingle Structural and functional diversity of asparaginases: Overview and recommendations for a revised nomenclature
da Silva, Leonardo Schultz [UNESP]
biopharmaceuticals
bioprospecting
classification
enzyme diversity
l-asparaginase
phylogeny
title_short Structural and functional diversity of asparaginases: Overview and recommendations for a revised nomenclature
title_full Structural and functional diversity of asparaginases: Overview and recommendations for a revised nomenclature
title_fullStr Structural and functional diversity of asparaginases: Overview and recommendations for a revised nomenclature
title_full_unstemmed Structural and functional diversity of asparaginases: Overview and recommendations for a revised nomenclature
title_sort Structural and functional diversity of asparaginases: Overview and recommendations for a revised nomenclature
author da Silva, Leonardo Schultz [UNESP]
author_facet da Silva, Leonardo Schultz [UNESP]
Doonan, Liam B.
Pessoa, Adalberto
de Oliveira, Marcos Antonio [UNESP]
Long, Paul F.
author_role author
author2 Doonan, Liam B.
Pessoa, Adalberto
de Oliveira, Marcos Antonio [UNESP]
Long, Paul F.
author2_role author
author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (Unesp)
King's College London
Universidade de São Paulo (USP)
dc.contributor.author.fl_str_mv da Silva, Leonardo Schultz [UNESP]
Doonan, Liam B.
Pessoa, Adalberto
de Oliveira, Marcos Antonio [UNESP]
Long, Paul F.
dc.subject.por.fl_str_mv biopharmaceuticals
bioprospecting
classification
enzyme diversity
l-asparaginase
phylogeny
topic biopharmaceuticals
bioprospecting
classification
enzyme diversity
l-asparaginase
phylogeny
description Asparaginases (ASNases) are a large and structurally diverse group of enzymes ubiquitous amongst archaea, bacteria and eukaryotes, that catalyze hydrolysis of asparagine to aspartate and ammonia. Bacterial ASNases are important biopharmaceuticals for the treatment of acute lymphoblastic leukemia, although some patients experience adverse allergic side effects during treatment with these protein therapeutics. ASNases are currently divided into three families: plant-type ASNases, Rhizobium etli-type ASNases and bacterial-type ASNases. This system is outdated as both bacterial-type and plant-type families also include archaeal, bacterial and eukaryotic enzymes, each with their own distinct characteristics. Herein, phylogenetic studies allied to tertiary structural analyses are described with the aim of proposing a revised and more robust classification system that considers the biochemical diversity of ASNases. Accordingly, based on distinct peptide domains, phylogenetic data, structural analysis and functional characteristics, we recommend that ASNases now be divided into three new distinct classes containing subgroups according to structural and functional aspects. Using this new classification scheme, 25 ASNases were identified as candidates for future new lead discovery.
publishDate 2021
dc.date.none.fl_str_mv 2021-06-25T10:26:34Z
2021-06-25T10:26:34Z
2021-01-01
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1002/bab.2127
Biotechnology and Applied Biochemistry.
1470-8744
0885-4513
http://hdl.handle.net/11449/206099
10.1002/bab.2127
2-s2.0-85103085102
url http://dx.doi.org/10.1002/bab.2127
http://hdl.handle.net/11449/206099
identifier_str_mv Biotechnology and Applied Biochemistry.
1470-8744
0885-4513
10.1002/bab.2127
2-s2.0-85103085102
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Biotechnology and Applied Biochemistry
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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