Genome-Wide Association Study of Meat Quality Traits in Nellore Cattle

Detalhes bibliográficos
Autor(a) principal: Magalhã, Ana F. B.
Data de Publicação: 2016
Outros Autores: De Camargo, Gregório M. F., Junior Fernandes, Gerardo A., Gordo, Daniel G. M., Tonussi, Rafael L., Costa, Raphael B., Espigolan, Rafael, De Silva, Rafael M.O., Bresolin, Tiago, De Andrade, Willian B.F., Takada, Luciana, Feitosa, Fabieli L. B., Baldi, Fernando, Carvalheiro, Roberto, Chardulo, Luis A. L., De Albuquerque, Lucia G.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1371/journal.pone.0157845
http://hdl.handle.net/11449/220656
Resumo: The objective of this study was to identify genomic regions that are associated with meat quality traits in the Nellore breed. Nellore steers were finished in feedlots and slaughtered at a commercial slaughterhouse. This analysis included 1,822 phenotypic records of tenderness and 1,873 marbling records. After quality control, 1,630 animals genotyped for tenderness, 1,633 animals genotyped for marbling, and 369,722 SNPs remained. The results are reported as the proportion of variance explained by windows of 150 adjacent SNPs. Only windows with largest effects were considered. The genomic regions were located on chromosomes 5, 15, 16 and 25 for marbling and on chromosomes 5, 7, 10, 14 and 21 for tenderness. These windows explained 3,89% and 3,80% of the additive genetic variance for marbling and tenderness, respectively. The genes associated with the traits are related to growth, muscle development and lipid metabolism. The study of these genes in Nellore cattle is the first step in the identification of causal mutations that will contribute to the genetic evaluation of the breed.
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spelling Genome-Wide Association Study of Meat Quality Traits in Nellore CattleThe objective of this study was to identify genomic regions that are associated with meat quality traits in the Nellore breed. Nellore steers were finished in feedlots and slaughtered at a commercial slaughterhouse. This analysis included 1,822 phenotypic records of tenderness and 1,873 marbling records. After quality control, 1,630 animals genotyped for tenderness, 1,633 animals genotyped for marbling, and 369,722 SNPs remained. The results are reported as the proportion of variance explained by windows of 150 adjacent SNPs. Only windows with largest effects were considered. The genomic regions were located on chromosomes 5, 15, 16 and 25 for marbling and on chromosomes 5, 7, 10, 14 and 21 for tenderness. These windows explained 3,89% and 3,80% of the additive genetic variance for marbling and tenderness, respectively. The genes associated with the traits are related to growth, muscle development and lipid metabolism. The study of these genes in Nellore cattle is the first step in the identification of causal mutations that will contribute to the genetic evaluation of the breed.Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Departamento de Zootecnia Faculdade de Ciências Agrarias E VeterináriasConselho Nacional de Desenvolvimento Científico E Tecnológico - CNPqDepartamento de Melhoramento E Nutrição Animal Faculdade de Medicina Veterinária E ZootecniaUniversidade Tecnológica do Paraná Dois VizinhosDepartamento de Medicina Veterinária Preventiva E Produção Animal Universidade Federal DaBahiaFaculdade de Ciências Agrarias E VeterináriasConselho Nacional de Desenvolvimento Científico E Tecnológico - CNPqFaculdade de Medicina Veterinária E ZootecniaDois VizinhosUniversidade Federal DaBahiaMagalhã, Ana F. B.De Camargo, Gregório M. F.Junior Fernandes, Gerardo A.Gordo, Daniel G. M.Tonussi, Rafael L.Costa, Raphael B.Espigolan, RafaelDe Silva, Rafael M.O.Bresolin, TiagoDe Andrade, Willian B.F.Takada, LucianaFeitosa, Fabieli L. B.Baldi, FernandoCarvalheiro, RobertoChardulo, Luis A. L.De Albuquerque, Lucia G.2022-04-28T19:03:56Z2022-04-28T19:03:56Z2016-06-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1371/journal.pone.0157845PLoS ONE, v. 11, n. 6, 2016.1932-6203http://hdl.handle.net/11449/22065610.1371/journal.pone.01578452-s2.0-84977569035Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengPLoS ONEinfo:eu-repo/semantics/openAccess2022-04-28T19:03:56Zoai:repositorio.unesp.br:11449/220656Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T17:23:11.722913Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Genome-Wide Association Study of Meat Quality Traits in Nellore Cattle
title Genome-Wide Association Study of Meat Quality Traits in Nellore Cattle
spellingShingle Genome-Wide Association Study of Meat Quality Traits in Nellore Cattle
Magalhã, Ana F. B.
title_short Genome-Wide Association Study of Meat Quality Traits in Nellore Cattle
title_full Genome-Wide Association Study of Meat Quality Traits in Nellore Cattle
title_fullStr Genome-Wide Association Study of Meat Quality Traits in Nellore Cattle
title_full_unstemmed Genome-Wide Association Study of Meat Quality Traits in Nellore Cattle
title_sort Genome-Wide Association Study of Meat Quality Traits in Nellore Cattle
author Magalhã, Ana F. B.
author_facet Magalhã, Ana F. B.
De Camargo, Gregório M. F.
Junior Fernandes, Gerardo A.
Gordo, Daniel G. M.
Tonussi, Rafael L.
Costa, Raphael B.
Espigolan, Rafael
De Silva, Rafael M.O.
Bresolin, Tiago
De Andrade, Willian B.F.
Takada, Luciana
Feitosa, Fabieli L. B.
Baldi, Fernando
Carvalheiro, Roberto
Chardulo, Luis A. L.
De Albuquerque, Lucia G.
author_role author
author2 De Camargo, Gregório M. F.
Junior Fernandes, Gerardo A.
Gordo, Daniel G. M.
Tonussi, Rafael L.
Costa, Raphael B.
Espigolan, Rafael
De Silva, Rafael M.O.
Bresolin, Tiago
De Andrade, Willian B.F.
Takada, Luciana
Feitosa, Fabieli L. B.
Baldi, Fernando
Carvalheiro, Roberto
Chardulo, Luis A. L.
De Albuquerque, Lucia G.
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Faculdade de Ciências Agrarias E Veterinárias
Conselho Nacional de Desenvolvimento Científico E Tecnológico - CNPq
Faculdade de Medicina Veterinária E Zootecnia
Dois Vizinhos
Universidade Federal DaBahia
dc.contributor.author.fl_str_mv Magalhã, Ana F. B.
De Camargo, Gregório M. F.
Junior Fernandes, Gerardo A.
Gordo, Daniel G. M.
Tonussi, Rafael L.
Costa, Raphael B.
Espigolan, Rafael
De Silva, Rafael M.O.
Bresolin, Tiago
De Andrade, Willian B.F.
Takada, Luciana
Feitosa, Fabieli L. B.
Baldi, Fernando
Carvalheiro, Roberto
Chardulo, Luis A. L.
De Albuquerque, Lucia G.
description The objective of this study was to identify genomic regions that are associated with meat quality traits in the Nellore breed. Nellore steers were finished in feedlots and slaughtered at a commercial slaughterhouse. This analysis included 1,822 phenotypic records of tenderness and 1,873 marbling records. After quality control, 1,630 animals genotyped for tenderness, 1,633 animals genotyped for marbling, and 369,722 SNPs remained. The results are reported as the proportion of variance explained by windows of 150 adjacent SNPs. Only windows with largest effects were considered. The genomic regions were located on chromosomes 5, 15, 16 and 25 for marbling and on chromosomes 5, 7, 10, 14 and 21 for tenderness. These windows explained 3,89% and 3,80% of the additive genetic variance for marbling and tenderness, respectively. The genes associated with the traits are related to growth, muscle development and lipid metabolism. The study of these genes in Nellore cattle is the first step in the identification of causal mutations that will contribute to the genetic evaluation of the breed.
publishDate 2016
dc.date.none.fl_str_mv 2016-06-01
2022-04-28T19:03:56Z
2022-04-28T19:03:56Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1371/journal.pone.0157845
PLoS ONE, v. 11, n. 6, 2016.
1932-6203
http://hdl.handle.net/11449/220656
10.1371/journal.pone.0157845
2-s2.0-84977569035
url http://dx.doi.org/10.1371/journal.pone.0157845
http://hdl.handle.net/11449/220656
identifier_str_mv PLoS ONE, v. 11, n. 6, 2016.
1932-6203
10.1371/journal.pone.0157845
2-s2.0-84977569035
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv PLoS ONE
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
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