Genome-Wide Association Study of Meat Quality Traits in Nellore Cattle
Autor(a) principal: | |
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Data de Publicação: | 2016 |
Outros Autores: | , , , , , , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.1371/journal.pone.0157845 http://hdl.handle.net/11449/220656 |
Resumo: | The objective of this study was to identify genomic regions that are associated with meat quality traits in the Nellore breed. Nellore steers were finished in feedlots and slaughtered at a commercial slaughterhouse. This analysis included 1,822 phenotypic records of tenderness and 1,873 marbling records. After quality control, 1,630 animals genotyped for tenderness, 1,633 animals genotyped for marbling, and 369,722 SNPs remained. The results are reported as the proportion of variance explained by windows of 150 adjacent SNPs. Only windows with largest effects were considered. The genomic regions were located on chromosomes 5, 15, 16 and 25 for marbling and on chromosomes 5, 7, 10, 14 and 21 for tenderness. These windows explained 3,89% and 3,80% of the additive genetic variance for marbling and tenderness, respectively. The genes associated with the traits are related to growth, muscle development and lipid metabolism. The study of these genes in Nellore cattle is the first step in the identification of causal mutations that will contribute to the genetic evaluation of the breed. |
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Repositório Institucional da UNESP |
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Genome-Wide Association Study of Meat Quality Traits in Nellore CattleThe objective of this study was to identify genomic regions that are associated with meat quality traits in the Nellore breed. Nellore steers were finished in feedlots and slaughtered at a commercial slaughterhouse. This analysis included 1,822 phenotypic records of tenderness and 1,873 marbling records. After quality control, 1,630 animals genotyped for tenderness, 1,633 animals genotyped for marbling, and 369,722 SNPs remained. The results are reported as the proportion of variance explained by windows of 150 adjacent SNPs. Only windows with largest effects were considered. The genomic regions were located on chromosomes 5, 15, 16 and 25 for marbling and on chromosomes 5, 7, 10, 14 and 21 for tenderness. These windows explained 3,89% and 3,80% of the additive genetic variance for marbling and tenderness, respectively. The genes associated with the traits are related to growth, muscle development and lipid metabolism. The study of these genes in Nellore cattle is the first step in the identification of causal mutations that will contribute to the genetic evaluation of the breed.Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Departamento de Zootecnia Faculdade de Ciências Agrarias E VeterináriasConselho Nacional de Desenvolvimento Científico E Tecnológico - CNPqDepartamento de Melhoramento E Nutrição Animal Faculdade de Medicina Veterinária E ZootecniaUniversidade Tecnológica do Paraná Dois VizinhosDepartamento de Medicina Veterinária Preventiva E Produção Animal Universidade Federal DaBahiaFaculdade de Ciências Agrarias E VeterináriasConselho Nacional de Desenvolvimento Científico E Tecnológico - CNPqFaculdade de Medicina Veterinária E ZootecniaDois VizinhosUniversidade Federal DaBahiaMagalhã, Ana F. B.De Camargo, Gregório M. F.Junior Fernandes, Gerardo A.Gordo, Daniel G. M.Tonussi, Rafael L.Costa, Raphael B.Espigolan, RafaelDe Silva, Rafael M.O.Bresolin, TiagoDe Andrade, Willian B.F.Takada, LucianaFeitosa, Fabieli L. B.Baldi, FernandoCarvalheiro, RobertoChardulo, Luis A. L.De Albuquerque, Lucia G.2022-04-28T19:03:56Z2022-04-28T19:03:56Z2016-06-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1371/journal.pone.0157845PLoS ONE, v. 11, n. 6, 2016.1932-6203http://hdl.handle.net/11449/22065610.1371/journal.pone.01578452-s2.0-84977569035Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengPLoS ONEinfo:eu-repo/semantics/openAccess2022-04-28T19:03:56Zoai:repositorio.unesp.br:11449/220656Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T17:23:11.722913Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Genome-Wide Association Study of Meat Quality Traits in Nellore Cattle |
title |
Genome-Wide Association Study of Meat Quality Traits in Nellore Cattle |
spellingShingle |
Genome-Wide Association Study of Meat Quality Traits in Nellore Cattle Magalhã, Ana F. B. |
title_short |
Genome-Wide Association Study of Meat Quality Traits in Nellore Cattle |
title_full |
Genome-Wide Association Study of Meat Quality Traits in Nellore Cattle |
title_fullStr |
Genome-Wide Association Study of Meat Quality Traits in Nellore Cattle |
title_full_unstemmed |
Genome-Wide Association Study of Meat Quality Traits in Nellore Cattle |
title_sort |
Genome-Wide Association Study of Meat Quality Traits in Nellore Cattle |
author |
Magalhã, Ana F. B. |
author_facet |
Magalhã, Ana F. B. De Camargo, Gregório M. F. Junior Fernandes, Gerardo A. Gordo, Daniel G. M. Tonussi, Rafael L. Costa, Raphael B. Espigolan, Rafael De Silva, Rafael M.O. Bresolin, Tiago De Andrade, Willian B.F. Takada, Luciana Feitosa, Fabieli L. B. Baldi, Fernando Carvalheiro, Roberto Chardulo, Luis A. L. De Albuquerque, Lucia G. |
author_role |
author |
author2 |
De Camargo, Gregório M. F. Junior Fernandes, Gerardo A. Gordo, Daniel G. M. Tonussi, Rafael L. Costa, Raphael B. Espigolan, Rafael De Silva, Rafael M.O. Bresolin, Tiago De Andrade, Willian B.F. Takada, Luciana Feitosa, Fabieli L. B. Baldi, Fernando Carvalheiro, Roberto Chardulo, Luis A. L. De Albuquerque, Lucia G. |
author2_role |
author author author author author author author author author author author author author author author |
dc.contributor.none.fl_str_mv |
Faculdade de Ciências Agrarias E Veterinárias Conselho Nacional de Desenvolvimento Científico E Tecnológico - CNPq Faculdade de Medicina Veterinária E Zootecnia Dois Vizinhos Universidade Federal DaBahia |
dc.contributor.author.fl_str_mv |
Magalhã, Ana F. B. De Camargo, Gregório M. F. Junior Fernandes, Gerardo A. Gordo, Daniel G. M. Tonussi, Rafael L. Costa, Raphael B. Espigolan, Rafael De Silva, Rafael M.O. Bresolin, Tiago De Andrade, Willian B.F. Takada, Luciana Feitosa, Fabieli L. B. Baldi, Fernando Carvalheiro, Roberto Chardulo, Luis A. L. De Albuquerque, Lucia G. |
description |
The objective of this study was to identify genomic regions that are associated with meat quality traits in the Nellore breed. Nellore steers were finished in feedlots and slaughtered at a commercial slaughterhouse. This analysis included 1,822 phenotypic records of tenderness and 1,873 marbling records. After quality control, 1,630 animals genotyped for tenderness, 1,633 animals genotyped for marbling, and 369,722 SNPs remained. The results are reported as the proportion of variance explained by windows of 150 adjacent SNPs. Only windows with largest effects were considered. The genomic regions were located on chromosomes 5, 15, 16 and 25 for marbling and on chromosomes 5, 7, 10, 14 and 21 for tenderness. These windows explained 3,89% and 3,80% of the additive genetic variance for marbling and tenderness, respectively. The genes associated with the traits are related to growth, muscle development and lipid metabolism. The study of these genes in Nellore cattle is the first step in the identification of causal mutations that will contribute to the genetic evaluation of the breed. |
publishDate |
2016 |
dc.date.none.fl_str_mv |
2016-06-01 2022-04-28T19:03:56Z 2022-04-28T19:03:56Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1371/journal.pone.0157845 PLoS ONE, v. 11, n. 6, 2016. 1932-6203 http://hdl.handle.net/11449/220656 10.1371/journal.pone.0157845 2-s2.0-84977569035 |
url |
http://dx.doi.org/10.1371/journal.pone.0157845 http://hdl.handle.net/11449/220656 |
identifier_str_mv |
PLoS ONE, v. 11, n. 6, 2016. 1932-6203 10.1371/journal.pone.0157845 2-s2.0-84977569035 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
PLoS ONE |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.source.none.fl_str_mv |
Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
|
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1808128802960703488 |