Fractal dimension analysis: A new tool for analyzing colony-forming units

Detalhes bibliográficos
Autor(a) principal: Nai, Gisele Alborghetti
Data de Publicação: 2021
Outros Autores: Martelli, Cesar Alberto TALAvera, Medina, Denis Aloísio Lopes, Oliveira, Mayla Silva Cayres de, Caldeira, Isadora Delfino, Henriques, Bruno Carvalho, Portelinha, Maria Júlia Schadeck, Eller, Lizziane Kretli Winkelstroter, Marques, Mariângela Esther Alencar [UNESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1016/j.mex.2021.101228
http://hdl.handle.net/11449/207144
Resumo: The gold standard for quantifying bacteria both in routine diagnostics and in research is plating followed by count of colony-forming units (CFU). But, manual CFU counting on plates is time-consuming and subjective. We evaluated fractal dimension as a new methodology for evaluating CFU. Twenty fragments of expanded polytetrafluoroethylene (ePTFE) synthetic vascular prosthesis and 20 silicone prostheses were embedded in bacterial suspensions and incubated. The prostheses were then sown in solid culture medium and incubated for 48 h. Petri dishes were photographed and analyzed by fractal dimension. There was correlation between the number of CFU in manual counting and the fractal dimension analysis (p = 0.0001). We demonstrated that fractal dimension is a useful method for microbiological analyses in researches. It makes CFU analysis easier and faster and can be used regardless of the culture medium. • Petri dishes with different bacterial colonies were photographed with a digital camera under natural light. • The images were binarized and analyzed with ImageJⓇ's “fractal dimension” tool. • Fractal dimension analysis showed to be a good tool for evaluating the amount of colony-forming unit.
id UNSP_55ae497ae7ba53bef04161c83c971a04
oai_identifier_str oai:repositorio.unesp.br:11449/207144
network_acronym_str UNSP
network_name_str Repositório Institucional da UNESP
repository_id_str 2946
spelling Fractal dimension analysis: A new tool for analyzing colony-forming unitsColony-forming units counting (CFU)Computer-assistedImage processingMicrobial colony countProstheses and implantsThe gold standard for quantifying bacteria both in routine diagnostics and in research is plating followed by count of colony-forming units (CFU). But, manual CFU counting on plates is time-consuming and subjective. We evaluated fractal dimension as a new methodology for evaluating CFU. Twenty fragments of expanded polytetrafluoroethylene (ePTFE) synthetic vascular prosthesis and 20 silicone prostheses were embedded in bacterial suspensions and incubated. The prostheses were then sown in solid culture medium and incubated for 48 h. Petri dishes were photographed and analyzed by fractal dimension. There was correlation between the number of CFU in manual counting and the fractal dimension analysis (p = 0.0001). We demonstrated that fractal dimension is a useful method for microbiological analyses in researches. It makes CFU analysis easier and faster and can be used regardless of the culture medium. • Petri dishes with different bacterial colonies were photographed with a digital camera under natural light. • The images were binarized and analyzed with ImageJⓇ's “fractal dimension” tool. • Fractal dimension analysis showed to be a good tool for evaluating the amount of colony-forming unit.Department of Pathology Universidade do Oeste Paulista (UNOESTE), Rua José Bongiovani, 700Department of Surgery Universidade do Oeste Paulista (UNOESTE), Rua José Bongiovani, 700Laboratory of Clinical Analysis Universidade do Oeste Paulista (UNOESTE), Rua José Bongiovani, 700Medical College Universidade do Oeste Paulista (UNOESTE), Rua José Bongiovani, 700Department of Microbiology Graduate Program in Health Sciences Universidade do Oeste Paulista (UNOESTE), Rua José Bongiovani, 700Department of Pathology Botucatu Medical School São Paulo State University (UNESP), Rubião Junior, s/n, 18618-970Department of Pathology Botucatu Medical School São Paulo State University (UNESP), Rubião Junior, s/n, 18618-970Universidade do Oeste Paulista (UNOESTE)Universidade Estadual Paulista (Unesp)Nai, Gisele AlborghettiMartelli, Cesar Alberto TALAveraMedina, Denis Aloísio LopesOliveira, Mayla Silva Cayres deCaldeira, Isadora DelfinoHenriques, Bruno CarvalhoPortelinha, Maria Júlia SchadeckEller, Lizziane Kretli WinkelstroterMarques, Mariângela Esther Alencar [UNESP]2021-06-25T10:49:37Z2021-06-25T10:49:37Z2021-01-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1016/j.mex.2021.101228MethodsX, v. 8.2215-0161http://hdl.handle.net/11449/20714410.1016/j.mex.2021.1012282-s2.0-85099395121Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengMethodsXinfo:eu-repo/semantics/openAccess2021-10-23T16:16:15Zoai:repositorio.unesp.br:11449/207144Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462021-10-23T16:16:15Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Fractal dimension analysis: A new tool for analyzing colony-forming units
title Fractal dimension analysis: A new tool for analyzing colony-forming units
spellingShingle Fractal dimension analysis: A new tool for analyzing colony-forming units
Nai, Gisele Alborghetti
Colony-forming units counting (CFU)
Computer-assisted
Image processing
Microbial colony count
Prostheses and implants
title_short Fractal dimension analysis: A new tool for analyzing colony-forming units
title_full Fractal dimension analysis: A new tool for analyzing colony-forming units
title_fullStr Fractal dimension analysis: A new tool for analyzing colony-forming units
title_full_unstemmed Fractal dimension analysis: A new tool for analyzing colony-forming units
title_sort Fractal dimension analysis: A new tool for analyzing colony-forming units
author Nai, Gisele Alborghetti
author_facet Nai, Gisele Alborghetti
Martelli, Cesar Alberto TALAvera
Medina, Denis Aloísio Lopes
Oliveira, Mayla Silva Cayres de
Caldeira, Isadora Delfino
Henriques, Bruno Carvalho
Portelinha, Maria Júlia Schadeck
Eller, Lizziane Kretli Winkelstroter
Marques, Mariângela Esther Alencar [UNESP]
author_role author
author2 Martelli, Cesar Alberto TALAvera
Medina, Denis Aloísio Lopes
Oliveira, Mayla Silva Cayres de
Caldeira, Isadora Delfino
Henriques, Bruno Carvalho
Portelinha, Maria Júlia Schadeck
Eller, Lizziane Kretli Winkelstroter
Marques, Mariângela Esther Alencar [UNESP]
author2_role author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade do Oeste Paulista (UNOESTE)
Universidade Estadual Paulista (Unesp)
dc.contributor.author.fl_str_mv Nai, Gisele Alborghetti
Martelli, Cesar Alberto TALAvera
Medina, Denis Aloísio Lopes
Oliveira, Mayla Silva Cayres de
Caldeira, Isadora Delfino
Henriques, Bruno Carvalho
Portelinha, Maria Júlia Schadeck
Eller, Lizziane Kretli Winkelstroter
Marques, Mariângela Esther Alencar [UNESP]
dc.subject.por.fl_str_mv Colony-forming units counting (CFU)
Computer-assisted
Image processing
Microbial colony count
Prostheses and implants
topic Colony-forming units counting (CFU)
Computer-assisted
Image processing
Microbial colony count
Prostheses and implants
description The gold standard for quantifying bacteria both in routine diagnostics and in research is plating followed by count of colony-forming units (CFU). But, manual CFU counting on plates is time-consuming and subjective. We evaluated fractal dimension as a new methodology for evaluating CFU. Twenty fragments of expanded polytetrafluoroethylene (ePTFE) synthetic vascular prosthesis and 20 silicone prostheses were embedded in bacterial suspensions and incubated. The prostheses were then sown in solid culture medium and incubated for 48 h. Petri dishes were photographed and analyzed by fractal dimension. There was correlation between the number of CFU in manual counting and the fractal dimension analysis (p = 0.0001). We demonstrated that fractal dimension is a useful method for microbiological analyses in researches. It makes CFU analysis easier and faster and can be used regardless of the culture medium. • Petri dishes with different bacterial colonies were photographed with a digital camera under natural light. • The images were binarized and analyzed with ImageJⓇ's “fractal dimension” tool. • Fractal dimension analysis showed to be a good tool for evaluating the amount of colony-forming unit.
publishDate 2021
dc.date.none.fl_str_mv 2021-06-25T10:49:37Z
2021-06-25T10:49:37Z
2021-01-01
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1016/j.mex.2021.101228
MethodsX, v. 8.
2215-0161
http://hdl.handle.net/11449/207144
10.1016/j.mex.2021.101228
2-s2.0-85099395121
url http://dx.doi.org/10.1016/j.mex.2021.101228
http://hdl.handle.net/11449/207144
identifier_str_mv MethodsX, v. 8.
2215-0161
10.1016/j.mex.2021.101228
2-s2.0-85099395121
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv MethodsX
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
_version_ 1799965523016941568