Microsatellite loci characterized in the leaf-cutter ant Atta laevigata

Detalhes bibliográficos
Autor(a) principal: Kakazu, Sérgio [UNESP]
Data de Publicação: 2013
Outros Autores: Sanches, Alexandra [UNESP], Bacci Jr., Maurício [UNESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1186/1756-0500-6-328
http://hdl.handle.net/11449/76295
Resumo: Background: The leaf-cutter ant Atta laevigata (Formicidae: Attini) is an agricultural pest largely distributed in the Neotropics and a model organism for studies of evolution, speciation and population genetics. Microsatellites are a very powerful tool for these kind of studies, but such markers are not available for studies on A. laevigata. In the present report, we describe the isolation and characterization of nine microsatellite loci in A. laevigata and the testing of these markers across other species of leaf-cutter ants. Findings. Nine microsatellite loci, consisting of six dinucloeotide, one trinucleotide, one tetranucleotide, and one di/trinucleotide repeat motifs, were isolated and characterized. Primers and protocols were successfully designed to selectively amplify these markers. To test effectiveness of these markers for detailed population genetic studies, we genotyped female workers collected from 36 monogynic nests of A. laevigata and found that eight loci were within Hardy-Weinberg expectations, while the remaining locus had a deficiency of heterozygotes. Micro-Checker analysis of individuals from 55 monogynic nests indicated that loci Alae11, Alae24, Alae18 showed signs of null alleles. For the remaining six loci, the number of alleles per locus ranged between 2 and 11, with expected heterozygosity ranging between 0.07 and 0.88. All of these loci cross-amplified in other species of Atta. Conclusions: These six polymorphic microsatellite loci should prove useful for future genetic investigations of the pest species Atta laevigata, as well as studies of other species of leaf-cutter ants in the genus Atta. © 2013 Kakazu et al.; licensee BioMed Central Ltd.
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spelling Microsatellite loci characterized in the leaf-cutter ant Atta laevigataAttiniMolecular systematicsPest antPopulation geneticsSpeciationAttaAtta laevigataFormicidaeBackground: The leaf-cutter ant Atta laevigata (Formicidae: Attini) is an agricultural pest largely distributed in the Neotropics and a model organism for studies of evolution, speciation and population genetics. Microsatellites are a very powerful tool for these kind of studies, but such markers are not available for studies on A. laevigata. In the present report, we describe the isolation and characterization of nine microsatellite loci in A. laevigata and the testing of these markers across other species of leaf-cutter ants. Findings. Nine microsatellite loci, consisting of six dinucloeotide, one trinucleotide, one tetranucleotide, and one di/trinucleotide repeat motifs, were isolated and characterized. Primers and protocols were successfully designed to selectively amplify these markers. To test effectiveness of these markers for detailed population genetic studies, we genotyped female workers collected from 36 monogynic nests of A. laevigata and found that eight loci were within Hardy-Weinberg expectations, while the remaining locus had a deficiency of heterozygotes. Micro-Checker analysis of individuals from 55 monogynic nests indicated that loci Alae11, Alae24, Alae18 showed signs of null alleles. For the remaining six loci, the number of alleles per locus ranged between 2 and 11, with expected heterozygosity ranging between 0.07 and 0.88. All of these loci cross-amplified in other species of Atta. Conclusions: These six polymorphic microsatellite loci should prove useful for future genetic investigations of the pest species Atta laevigata, as well as studies of other species of leaf-cutter ants in the genus Atta. © 2013 Kakazu et al.; licensee BioMed Central Ltd.Centro de Estudos de Insetos Sociais Instituto de Biociências Universidade Estadual Paulista (UNESP), Rio-Claro, SP 13506-900Departamento de Ecologia Instituto de Biociências Universidade Estadual Paulista (UNESP), Rio-Claro, SP 13506-900Centro de Estudos de Insetos Sociais Instituto de Biociências Universidade Estadual Paulista (UNESP), Rio-Claro, SP 13506-900Departamento de Ecologia Instituto de Biociências Universidade Estadual Paulista (UNESP), Rio-Claro, SP 13506-900Universidade Estadual Paulista (Unesp)Kakazu, Sérgio [UNESP]Sanches, Alexandra [UNESP]Bacci Jr., Maurício [UNESP]2014-05-27T11:30:11Z2014-05-27T11:30:11Z2013-08-20info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://dx.doi.org/10.1186/1756-0500-6-328BMC Research Notes, v. 6, n. 1, 2013.1756-0500http://hdl.handle.net/11449/7629510.1186/1756-0500-6-3282-s2.0-848814970022-s2.0-84881497002.pdfScopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengBMC Research Notes0,691info:eu-repo/semantics/openAccess2024-04-11T14:57:01Zoai:repositorio.unesp.br:11449/76295Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T14:10:16.210996Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Microsatellite loci characterized in the leaf-cutter ant Atta laevigata
title Microsatellite loci characterized in the leaf-cutter ant Atta laevigata
spellingShingle Microsatellite loci characterized in the leaf-cutter ant Atta laevigata
Kakazu, Sérgio [UNESP]
Attini
Molecular systematics
Pest ant
Population genetics
Speciation
Atta
Atta laevigata
Formicidae
title_short Microsatellite loci characterized in the leaf-cutter ant Atta laevigata
title_full Microsatellite loci characterized in the leaf-cutter ant Atta laevigata
title_fullStr Microsatellite loci characterized in the leaf-cutter ant Atta laevigata
title_full_unstemmed Microsatellite loci characterized in the leaf-cutter ant Atta laevigata
title_sort Microsatellite loci characterized in the leaf-cutter ant Atta laevigata
author Kakazu, Sérgio [UNESP]
author_facet Kakazu, Sérgio [UNESP]
Sanches, Alexandra [UNESP]
Bacci Jr., Maurício [UNESP]
author_role author
author2 Sanches, Alexandra [UNESP]
Bacci Jr., Maurício [UNESP]
author2_role author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (Unesp)
dc.contributor.author.fl_str_mv Kakazu, Sérgio [UNESP]
Sanches, Alexandra [UNESP]
Bacci Jr., Maurício [UNESP]
dc.subject.por.fl_str_mv Attini
Molecular systematics
Pest ant
Population genetics
Speciation
Atta
Atta laevigata
Formicidae
topic Attini
Molecular systematics
Pest ant
Population genetics
Speciation
Atta
Atta laevigata
Formicidae
description Background: The leaf-cutter ant Atta laevigata (Formicidae: Attini) is an agricultural pest largely distributed in the Neotropics and a model organism for studies of evolution, speciation and population genetics. Microsatellites are a very powerful tool for these kind of studies, but such markers are not available for studies on A. laevigata. In the present report, we describe the isolation and characterization of nine microsatellite loci in A. laevigata and the testing of these markers across other species of leaf-cutter ants. Findings. Nine microsatellite loci, consisting of six dinucloeotide, one trinucleotide, one tetranucleotide, and one di/trinucleotide repeat motifs, were isolated and characterized. Primers and protocols were successfully designed to selectively amplify these markers. To test effectiveness of these markers for detailed population genetic studies, we genotyped female workers collected from 36 monogynic nests of A. laevigata and found that eight loci were within Hardy-Weinberg expectations, while the remaining locus had a deficiency of heterozygotes. Micro-Checker analysis of individuals from 55 monogynic nests indicated that loci Alae11, Alae24, Alae18 showed signs of null alleles. For the remaining six loci, the number of alleles per locus ranged between 2 and 11, with expected heterozygosity ranging between 0.07 and 0.88. All of these loci cross-amplified in other species of Atta. Conclusions: These six polymorphic microsatellite loci should prove useful for future genetic investigations of the pest species Atta laevigata, as well as studies of other species of leaf-cutter ants in the genus Atta. © 2013 Kakazu et al.; licensee BioMed Central Ltd.
publishDate 2013
dc.date.none.fl_str_mv 2013-08-20
2014-05-27T11:30:11Z
2014-05-27T11:30:11Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1186/1756-0500-6-328
BMC Research Notes, v. 6, n. 1, 2013.
1756-0500
http://hdl.handle.net/11449/76295
10.1186/1756-0500-6-328
2-s2.0-84881497002
2-s2.0-84881497002.pdf
url http://dx.doi.org/10.1186/1756-0500-6-328
http://hdl.handle.net/11449/76295
identifier_str_mv BMC Research Notes, v. 6, n. 1, 2013.
1756-0500
10.1186/1756-0500-6-328
2-s2.0-84881497002
2-s2.0-84881497002.pdf
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv BMC Research Notes
0,691
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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