Chromosomal evolution of tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae)

Detalhes bibliográficos
Autor(a) principal: do Nascimento Moreira, Camila [UNESP]
Data de Publicação: 2022
Outros Autores: Percequillo, Alexandre Reis, Ferguson-Smith, Malcolm Andrew, Yonenaga-Yassuda, Yatiyo, Ventura, Karen
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1007/s42991-022-00244-4
http://hdl.handle.net/11449/223656
Resumo: Oryzomyini is the most diverse tribe of subfamily Sigmodontinae, comprising 30 genera and 147 extant species. Cytogenetic studies on Oryzomyini reflect this diversity, revealing an exceptional range of karyotype variability, with chromosome numbers ranging from 2n = 16 to 2n = 88. In addition, some species exhibit autosomal and sex chromosomal polymorphisms, as well as the presence of B chromosomes. In the search for a more detailed understanding of the processes involved in karyotype diversification of Oryzomyini, we performed a genome-wide comparative study using chromosome probes of the entire chromosome set of Holochilus nanus and some autosomes of Oligoryzomys moojeni on metaphases of 15 species of Oryzomyini, in addition to one species of tribe Thomasomyini. We also performed a phylogenetic analysis of these species using chromosome painting data. The results show complete chromosome homology among the autosomal complement of species of Oryzomyini with the presence of pericentric inversions or centromeric shifts, paracentric inversion, Robertsonian rearrangements, tandem fusions/fissions, and translocations involved in the karyotype evolution of the tribe. In addition, sex chromosomes of these species present a homologous region between all analyzed species with amplification of the species-specific heterochromatin. The use of two different approaches to perform a phylogenetic analysis based on chromosome painting data revealed which one is more trustworthy and presents results similar to the findings obtained by molecular and morphological analyses. Finally, we propose that chromosomal diversity of the tribe Oryzomyini is promoted by genomic elements, such as repetitive DNA, that trigger the karyotype variability of these rodents.
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spelling Chromosomal evolution of tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae)Chromosomal phylogenyKaryotype evolutionNeotropical rodentsZOO-FISHOryzomyini is the most diverse tribe of subfamily Sigmodontinae, comprising 30 genera and 147 extant species. Cytogenetic studies on Oryzomyini reflect this diversity, revealing an exceptional range of karyotype variability, with chromosome numbers ranging from 2n = 16 to 2n = 88. In addition, some species exhibit autosomal and sex chromosomal polymorphisms, as well as the presence of B chromosomes. In the search for a more detailed understanding of the processes involved in karyotype diversification of Oryzomyini, we performed a genome-wide comparative study using chromosome probes of the entire chromosome set of Holochilus nanus and some autosomes of Oligoryzomys moojeni on metaphases of 15 species of Oryzomyini, in addition to one species of tribe Thomasomyini. We also performed a phylogenetic analysis of these species using chromosome painting data. The results show complete chromosome homology among the autosomal complement of species of Oryzomyini with the presence of pericentric inversions or centromeric shifts, paracentric inversion, Robertsonian rearrangements, tandem fusions/fissions, and translocations involved in the karyotype evolution of the tribe. In addition, sex chromosomes of these species present a homologous region between all analyzed species with amplification of the species-specific heterochromatin. The use of two different approaches to perform a phylogenetic analysis based on chromosome painting data revealed which one is more trustworthy and presents results similar to the findings obtained by molecular and morphological analyses. Finally, we propose that chromosomal diversity of the tribe Oryzomyini is promoted by genomic elements, such as repetitive DNA, that trigger the karyotype variability of these rodents.Departamento de Biologia Estrutural e Funcional Instituto de Biociências Universidade Estadual PaulistaDepartamento de Ciências Biológicas Escola Superior de Agricultura “Luiz de Queiroz” Universidade de São PauloCambridge Resource Centre for Comparative Genomics Department of Veterinary Medicine University of CambridgeDepartamento de Genética e Biologia Evolutiva Instituto de Biociências Universidade de São PauloDepartamento de Biologia Estrutural e Funcional Instituto de Biociências Universidade Estadual PaulistaUniversidade Estadual Paulista (UNESP)Universidade de São Paulo (USP)University of Cambridgedo Nascimento Moreira, Camila [UNESP]Percequillo, Alexandre ReisFerguson-Smith, Malcolm AndrewYonenaga-Yassuda, YatiyoVentura, Karen2022-04-28T19:51:59Z2022-04-28T19:51:59Z2022-01-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1007/s42991-022-00244-4Mammalian Biology.1618-14761616-5047http://hdl.handle.net/11449/22365610.1007/s42991-022-00244-42-s2.0-85126456212Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengMammalian Biologyinfo:eu-repo/semantics/openAccess2022-04-28T19:51:59Zoai:repositorio.unesp.br:11449/223656Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestrepositoriounesp@unesp.bropendoar:29462022-04-28T19:51:59Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Chromosomal evolution of tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae)
title Chromosomal evolution of tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae)
spellingShingle Chromosomal evolution of tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae)
do Nascimento Moreira, Camila [UNESP]
Chromosomal phylogeny
Karyotype evolution
Neotropical rodents
ZOO-FISH
title_short Chromosomal evolution of tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae)
title_full Chromosomal evolution of tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae)
title_fullStr Chromosomal evolution of tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae)
title_full_unstemmed Chromosomal evolution of tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae)
title_sort Chromosomal evolution of tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae)
author do Nascimento Moreira, Camila [UNESP]
author_facet do Nascimento Moreira, Camila [UNESP]
Percequillo, Alexandre Reis
Ferguson-Smith, Malcolm Andrew
Yonenaga-Yassuda, Yatiyo
Ventura, Karen
author_role author
author2 Percequillo, Alexandre Reis
Ferguson-Smith, Malcolm Andrew
Yonenaga-Yassuda, Yatiyo
Ventura, Karen
author2_role author
author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (UNESP)
Universidade de São Paulo (USP)
University of Cambridge
dc.contributor.author.fl_str_mv do Nascimento Moreira, Camila [UNESP]
Percequillo, Alexandre Reis
Ferguson-Smith, Malcolm Andrew
Yonenaga-Yassuda, Yatiyo
Ventura, Karen
dc.subject.por.fl_str_mv Chromosomal phylogeny
Karyotype evolution
Neotropical rodents
ZOO-FISH
topic Chromosomal phylogeny
Karyotype evolution
Neotropical rodents
ZOO-FISH
description Oryzomyini is the most diverse tribe of subfamily Sigmodontinae, comprising 30 genera and 147 extant species. Cytogenetic studies on Oryzomyini reflect this diversity, revealing an exceptional range of karyotype variability, with chromosome numbers ranging from 2n = 16 to 2n = 88. In addition, some species exhibit autosomal and sex chromosomal polymorphisms, as well as the presence of B chromosomes. In the search for a more detailed understanding of the processes involved in karyotype diversification of Oryzomyini, we performed a genome-wide comparative study using chromosome probes of the entire chromosome set of Holochilus nanus and some autosomes of Oligoryzomys moojeni on metaphases of 15 species of Oryzomyini, in addition to one species of tribe Thomasomyini. We also performed a phylogenetic analysis of these species using chromosome painting data. The results show complete chromosome homology among the autosomal complement of species of Oryzomyini with the presence of pericentric inversions or centromeric shifts, paracentric inversion, Robertsonian rearrangements, tandem fusions/fissions, and translocations involved in the karyotype evolution of the tribe. In addition, sex chromosomes of these species present a homologous region between all analyzed species with amplification of the species-specific heterochromatin. The use of two different approaches to perform a phylogenetic analysis based on chromosome painting data revealed which one is more trustworthy and presents results similar to the findings obtained by molecular and morphological analyses. Finally, we propose that chromosomal diversity of the tribe Oryzomyini is promoted by genomic elements, such as repetitive DNA, that trigger the karyotype variability of these rodents.
publishDate 2022
dc.date.none.fl_str_mv 2022-04-28T19:51:59Z
2022-04-28T19:51:59Z
2022-01-01
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1007/s42991-022-00244-4
Mammalian Biology.
1618-1476
1616-5047
http://hdl.handle.net/11449/223656
10.1007/s42991-022-00244-4
2-s2.0-85126456212
url http://dx.doi.org/10.1007/s42991-022-00244-4
http://hdl.handle.net/11449/223656
identifier_str_mv Mammalian Biology.
1618-1476
1616-5047
10.1007/s42991-022-00244-4
2-s2.0-85126456212
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Mammalian Biology
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv repositoriounesp@unesp.br
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