Chromosomal evolution of tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae)
Autor(a) principal: | |
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Data de Publicação: | 2022 |
Outros Autores: | , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.1007/s42991-022-00244-4 http://hdl.handle.net/11449/223656 |
Resumo: | Oryzomyini is the most diverse tribe of subfamily Sigmodontinae, comprising 30 genera and 147 extant species. Cytogenetic studies on Oryzomyini reflect this diversity, revealing an exceptional range of karyotype variability, with chromosome numbers ranging from 2n = 16 to 2n = 88. In addition, some species exhibit autosomal and sex chromosomal polymorphisms, as well as the presence of B chromosomes. In the search for a more detailed understanding of the processes involved in karyotype diversification of Oryzomyini, we performed a genome-wide comparative study using chromosome probes of the entire chromosome set of Holochilus nanus and some autosomes of Oligoryzomys moojeni on metaphases of 15 species of Oryzomyini, in addition to one species of tribe Thomasomyini. We also performed a phylogenetic analysis of these species using chromosome painting data. The results show complete chromosome homology among the autosomal complement of species of Oryzomyini with the presence of pericentric inversions or centromeric shifts, paracentric inversion, Robertsonian rearrangements, tandem fusions/fissions, and translocations involved in the karyotype evolution of the tribe. In addition, sex chromosomes of these species present a homologous region between all analyzed species with amplification of the species-specific heterochromatin. The use of two different approaches to perform a phylogenetic analysis based on chromosome painting data revealed which one is more trustworthy and presents results similar to the findings obtained by molecular and morphological analyses. Finally, we propose that chromosomal diversity of the tribe Oryzomyini is promoted by genomic elements, such as repetitive DNA, that trigger the karyotype variability of these rodents. |
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Chromosomal evolution of tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae)Chromosomal phylogenyKaryotype evolutionNeotropical rodentsZOO-FISHOryzomyini is the most diverse tribe of subfamily Sigmodontinae, comprising 30 genera and 147 extant species. Cytogenetic studies on Oryzomyini reflect this diversity, revealing an exceptional range of karyotype variability, with chromosome numbers ranging from 2n = 16 to 2n = 88. In addition, some species exhibit autosomal and sex chromosomal polymorphisms, as well as the presence of B chromosomes. In the search for a more detailed understanding of the processes involved in karyotype diversification of Oryzomyini, we performed a genome-wide comparative study using chromosome probes of the entire chromosome set of Holochilus nanus and some autosomes of Oligoryzomys moojeni on metaphases of 15 species of Oryzomyini, in addition to one species of tribe Thomasomyini. We also performed a phylogenetic analysis of these species using chromosome painting data. The results show complete chromosome homology among the autosomal complement of species of Oryzomyini with the presence of pericentric inversions or centromeric shifts, paracentric inversion, Robertsonian rearrangements, tandem fusions/fissions, and translocations involved in the karyotype evolution of the tribe. In addition, sex chromosomes of these species present a homologous region between all analyzed species with amplification of the species-specific heterochromatin. The use of two different approaches to perform a phylogenetic analysis based on chromosome painting data revealed which one is more trustworthy and presents results similar to the findings obtained by molecular and morphological analyses. Finally, we propose that chromosomal diversity of the tribe Oryzomyini is promoted by genomic elements, such as repetitive DNA, that trigger the karyotype variability of these rodents.Departamento de Biologia Estrutural e Funcional Instituto de Biociências Universidade Estadual PaulistaDepartamento de Ciências Biológicas Escola Superior de Agricultura “Luiz de Queiroz” Universidade de São PauloCambridge Resource Centre for Comparative Genomics Department of Veterinary Medicine University of CambridgeDepartamento de Genética e Biologia Evolutiva Instituto de Biociências Universidade de São PauloDepartamento de Biologia Estrutural e Funcional Instituto de Biociências Universidade Estadual PaulistaUniversidade Estadual Paulista (UNESP)Universidade de São Paulo (USP)University of Cambridgedo Nascimento Moreira, Camila [UNESP]Percequillo, Alexandre ReisFerguson-Smith, Malcolm AndrewYonenaga-Yassuda, YatiyoVentura, Karen2022-04-28T19:51:59Z2022-04-28T19:51:59Z2022-01-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1007/s42991-022-00244-4Mammalian Biology.1618-14761616-5047http://hdl.handle.net/11449/22365610.1007/s42991-022-00244-42-s2.0-85126456212Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengMammalian Biologyinfo:eu-repo/semantics/openAccess2022-04-28T19:51:59Zoai:repositorio.unesp.br:11449/223656Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestrepositoriounesp@unesp.bropendoar:29462022-04-28T19:51:59Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Chromosomal evolution of tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae) |
title |
Chromosomal evolution of tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae) |
spellingShingle |
Chromosomal evolution of tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae) do Nascimento Moreira, Camila [UNESP] Chromosomal phylogeny Karyotype evolution Neotropical rodents ZOO-FISH |
title_short |
Chromosomal evolution of tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae) |
title_full |
Chromosomal evolution of tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae) |
title_fullStr |
Chromosomal evolution of tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae) |
title_full_unstemmed |
Chromosomal evolution of tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae) |
title_sort |
Chromosomal evolution of tribe Oryzomyini (Rodentia: Cricetidae: Sigmodontinae) |
author |
do Nascimento Moreira, Camila [UNESP] |
author_facet |
do Nascimento Moreira, Camila [UNESP] Percequillo, Alexandre Reis Ferguson-Smith, Malcolm Andrew Yonenaga-Yassuda, Yatiyo Ventura, Karen |
author_role |
author |
author2 |
Percequillo, Alexandre Reis Ferguson-Smith, Malcolm Andrew Yonenaga-Yassuda, Yatiyo Ventura, Karen |
author2_role |
author author author author |
dc.contributor.none.fl_str_mv |
Universidade Estadual Paulista (UNESP) Universidade de São Paulo (USP) University of Cambridge |
dc.contributor.author.fl_str_mv |
do Nascimento Moreira, Camila [UNESP] Percequillo, Alexandre Reis Ferguson-Smith, Malcolm Andrew Yonenaga-Yassuda, Yatiyo Ventura, Karen |
dc.subject.por.fl_str_mv |
Chromosomal phylogeny Karyotype evolution Neotropical rodents ZOO-FISH |
topic |
Chromosomal phylogeny Karyotype evolution Neotropical rodents ZOO-FISH |
description |
Oryzomyini is the most diverse tribe of subfamily Sigmodontinae, comprising 30 genera and 147 extant species. Cytogenetic studies on Oryzomyini reflect this diversity, revealing an exceptional range of karyotype variability, with chromosome numbers ranging from 2n = 16 to 2n = 88. In addition, some species exhibit autosomal and sex chromosomal polymorphisms, as well as the presence of B chromosomes. In the search for a more detailed understanding of the processes involved in karyotype diversification of Oryzomyini, we performed a genome-wide comparative study using chromosome probes of the entire chromosome set of Holochilus nanus and some autosomes of Oligoryzomys moojeni on metaphases of 15 species of Oryzomyini, in addition to one species of tribe Thomasomyini. We also performed a phylogenetic analysis of these species using chromosome painting data. The results show complete chromosome homology among the autosomal complement of species of Oryzomyini with the presence of pericentric inversions or centromeric shifts, paracentric inversion, Robertsonian rearrangements, tandem fusions/fissions, and translocations involved in the karyotype evolution of the tribe. In addition, sex chromosomes of these species present a homologous region between all analyzed species with amplification of the species-specific heterochromatin. The use of two different approaches to perform a phylogenetic analysis based on chromosome painting data revealed which one is more trustworthy and presents results similar to the findings obtained by molecular and morphological analyses. Finally, we propose that chromosomal diversity of the tribe Oryzomyini is promoted by genomic elements, such as repetitive DNA, that trigger the karyotype variability of these rodents. |
publishDate |
2022 |
dc.date.none.fl_str_mv |
2022-04-28T19:51:59Z 2022-04-28T19:51:59Z 2022-01-01 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1007/s42991-022-00244-4 Mammalian Biology. 1618-1476 1616-5047 http://hdl.handle.net/11449/223656 10.1007/s42991-022-00244-4 2-s2.0-85126456212 |
url |
http://dx.doi.org/10.1007/s42991-022-00244-4 http://hdl.handle.net/11449/223656 |
identifier_str_mv |
Mammalian Biology. 1618-1476 1616-5047 10.1007/s42991-022-00244-4 2-s2.0-85126456212 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Mammalian Biology |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.source.none.fl_str_mv |
Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
repositoriounesp@unesp.br |
_version_ |
1826303464858189824 |