Search for genomic alterations in monozygotic twins discordant for cleft lip and/or palate

Detalhes bibliográficos
Autor(a) principal: Kimani, Jane W.
Data de Publicação: 2009
Outros Autores: Yoshiura, Koh-Ichiro, Shi, Min, Jugessur, Astanand, Moretti-Ferreira, Danilo [UNESP], Christensen, Kaare, Murray, Jeffrey C.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1375/twin.12.5.462
http://hdl.handle.net/11449/225749
Resumo: Phenotypically discordant monozygotic twins offer the possibility of gene discovery through delineation of molecular abnormalities in one member of the twin pair. One proposed mechanism of discordance is postzygotically occurring genomic alterations resulting from mitotic recombination and other somatic changes. Detection of altered genomic fragments can reveal candidate gene loci that can be verified through additional analyses. We investigated this hypothesis using array comparative genomic hybridization; the 50K and 250K Affymetrix GeneChip® SNP arrays and an Illumina custom array consisting of 1,536 SNPs, to scan for genomic alterations in a sample of monozygotic twin pairs with discordant cleft lip and/or palate phenotypes. Paired analysis for deletions, amplifications and loss of heterozygosity, along with sequence verification of SNPs with discordant genotype calls did not reveal any genomic discordance between twin pairs in lymphocyte DNA samples. Our results demonstrate that postzygotic genomic alterations are not a common cause of monozygotic twin discordance for isolated cleft lip and/or palate. However, rare or balanced genomic alterations, tissue-specific events and small aberrations beyond the detection level of our experimental approach cannot be ruled out. The stability of genomes we observed in our study samples also suggests that detection of discordant events in other monozygotic twin pairs would be remarkable and of potential disease significance.
id UNSP_6041e33003f08e1fceefc2fac09d5561
oai_identifier_str oai:repositorio.unesp.br:11449/225749
network_acronym_str UNSP
network_name_str Repositório Institucional da UNESP
repository_id_str 2946
spelling Search for genomic alterations in monozygotic twins discordant for cleft lip and/or palateCleft lip and palateDiscordantGenome-wideMonozygotic twinsPhenotypically discordant monozygotic twins offer the possibility of gene discovery through delineation of molecular abnormalities in one member of the twin pair. One proposed mechanism of discordance is postzygotically occurring genomic alterations resulting from mitotic recombination and other somatic changes. Detection of altered genomic fragments can reveal candidate gene loci that can be verified through additional analyses. We investigated this hypothesis using array comparative genomic hybridization; the 50K and 250K Affymetrix GeneChip® SNP arrays and an Illumina custom array consisting of 1,536 SNPs, to scan for genomic alterations in a sample of monozygotic twin pairs with discordant cleft lip and/or palate phenotypes. Paired analysis for deletions, amplifications and loss of heterozygosity, along with sequence verification of SNPs with discordant genotype calls did not reveal any genomic discordance between twin pairs in lymphocyte DNA samples. Our results demonstrate that postzygotic genomic alterations are not a common cause of monozygotic twin discordance for isolated cleft lip and/or palate. However, rare or balanced genomic alterations, tissue-specific events and small aberrations beyond the detection level of our experimental approach cannot be ruled out. The stability of genomes we observed in our study samples also suggests that detection of discordant events in other monozygotic twin pairs would be remarkable and of potential disease significance.University of Iowa Department of Pediatrics, S. Grand Avenue, 2182 ML, Iowa City, IA 52242Department of Pathology and Lab. Medicine University of North CarolinaDepartment of Human Genetics Nagasaki University Graduate School of Biomedical Sciences, NagasakiBiostatistics Branch National Institute of Environmental Health Sciences (NIEHS)Craniofacial Development Murdoch Children's Research Institute Royal Children's Hospital, Melbourne, VICServico de Aconselhamento Genetico da Universidade Estadual Paulista, BotucatuDepartment of Epidemiology Institute of Public Health University of Southern DenmarkServico de Aconselhamento Genetico da Universidade Estadual Paulista, BotucatuUniversity of IowaUniversity of North CarolinaNagasaki University Graduate School of Biomedical SciencesNational Institute of Environmental Health Sciences (NIEHS)Royal Children's HospitalUniversidade Estadual Paulista (UNESP)University of Southern DenmarkKimani, Jane W.Yoshiura, Koh-IchiroShi, MinJugessur, AstanandMoretti-Ferreira, Danilo [UNESP]Christensen, KaareMurray, Jeffrey C.2022-04-28T20:59:30Z2022-04-28T20:59:30Z2009-12-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article462-468http://dx.doi.org/10.1375/twin.12.5.462Twin Research and Human Genetics, v. 12, n. 5, p. 462-468, 2009.1832-4274http://hdl.handle.net/11449/22574910.1375/twin.12.5.4622-s2.0-74949144188Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengTwin Research and Human Geneticsinfo:eu-repo/semantics/openAccess2022-04-28T20:59:30Zoai:repositorio.unesp.br:11449/225749Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T22:11:55.697045Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Search for genomic alterations in monozygotic twins discordant for cleft lip and/or palate
title Search for genomic alterations in monozygotic twins discordant for cleft lip and/or palate
spellingShingle Search for genomic alterations in monozygotic twins discordant for cleft lip and/or palate
Kimani, Jane W.
Cleft lip and palate
Discordant
Genome-wide
Monozygotic twins
title_short Search for genomic alterations in monozygotic twins discordant for cleft lip and/or palate
title_full Search for genomic alterations in monozygotic twins discordant for cleft lip and/or palate
title_fullStr Search for genomic alterations in monozygotic twins discordant for cleft lip and/or palate
title_full_unstemmed Search for genomic alterations in monozygotic twins discordant for cleft lip and/or palate
title_sort Search for genomic alterations in monozygotic twins discordant for cleft lip and/or palate
author Kimani, Jane W.
author_facet Kimani, Jane W.
Yoshiura, Koh-Ichiro
Shi, Min
Jugessur, Astanand
Moretti-Ferreira, Danilo [UNESP]
Christensen, Kaare
Murray, Jeffrey C.
author_role author
author2 Yoshiura, Koh-Ichiro
Shi, Min
Jugessur, Astanand
Moretti-Ferreira, Danilo [UNESP]
Christensen, Kaare
Murray, Jeffrey C.
author2_role author
author
author
author
author
author
dc.contributor.none.fl_str_mv University of Iowa
University of North Carolina
Nagasaki University Graduate School of Biomedical Sciences
National Institute of Environmental Health Sciences (NIEHS)
Royal Children's Hospital
Universidade Estadual Paulista (UNESP)
University of Southern Denmark
dc.contributor.author.fl_str_mv Kimani, Jane W.
Yoshiura, Koh-Ichiro
Shi, Min
Jugessur, Astanand
Moretti-Ferreira, Danilo [UNESP]
Christensen, Kaare
Murray, Jeffrey C.
dc.subject.por.fl_str_mv Cleft lip and palate
Discordant
Genome-wide
Monozygotic twins
topic Cleft lip and palate
Discordant
Genome-wide
Monozygotic twins
description Phenotypically discordant monozygotic twins offer the possibility of gene discovery through delineation of molecular abnormalities in one member of the twin pair. One proposed mechanism of discordance is postzygotically occurring genomic alterations resulting from mitotic recombination and other somatic changes. Detection of altered genomic fragments can reveal candidate gene loci that can be verified through additional analyses. We investigated this hypothesis using array comparative genomic hybridization; the 50K and 250K Affymetrix GeneChip® SNP arrays and an Illumina custom array consisting of 1,536 SNPs, to scan for genomic alterations in a sample of monozygotic twin pairs with discordant cleft lip and/or palate phenotypes. Paired analysis for deletions, amplifications and loss of heterozygosity, along with sequence verification of SNPs with discordant genotype calls did not reveal any genomic discordance between twin pairs in lymphocyte DNA samples. Our results demonstrate that postzygotic genomic alterations are not a common cause of monozygotic twin discordance for isolated cleft lip and/or palate. However, rare or balanced genomic alterations, tissue-specific events and small aberrations beyond the detection level of our experimental approach cannot be ruled out. The stability of genomes we observed in our study samples also suggests that detection of discordant events in other monozygotic twin pairs would be remarkable and of potential disease significance.
publishDate 2009
dc.date.none.fl_str_mv 2009-12-01
2022-04-28T20:59:30Z
2022-04-28T20:59:30Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1375/twin.12.5.462
Twin Research and Human Genetics, v. 12, n. 5, p. 462-468, 2009.
1832-4274
http://hdl.handle.net/11449/225749
10.1375/twin.12.5.462
2-s2.0-74949144188
url http://dx.doi.org/10.1375/twin.12.5.462
http://hdl.handle.net/11449/225749
identifier_str_mv Twin Research and Human Genetics, v. 12, n. 5, p. 462-468, 2009.
1832-4274
10.1375/twin.12.5.462
2-s2.0-74949144188
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Twin Research and Human Genetics
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 462-468
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
_version_ 1808129404140781568