Computational Applications in Secondary Metabolite Discovery (CAiSMD): an online workshop

Detalhes bibliográficos
Autor(a) principal: Ntie-Kang, Fidele
Data de Publicação: 2021
Outros Autores: Telukunta, Kiran K., Fobofou, Serge A. T., Chukwudi Osamor, Victor, Egieyeh, Samuel A., Valli, Marilia [UNESP], Djoumbou-Feunang, Yannick, Sorokina, Maria, Stork, Conrad, Mathai, Neann, Zierep, Paul, Chávez-Hernández, Ana L., Duran-Frigola, Miquel, Babiaka, Smith B., Tematio Fouedjou, Romuald, Eni, Donatus B., Akame, Simeon, Arreyetta-Bawak, Augustine B., Ebob, Oyere T., Metuge, Jonathan A., Bekono, Boris D., Isa, Mustafa A., Onuku, Raphael, Shadrack, Daniel M., Musyoka, Thommas M., Patil, Vaishali M., van der Hooft, Justin J. J., da Silva Bolzani, Vanderlan [UNESP], Medina-Franco, José L., Kirchmair, Johannes, Weber, Tilmann, Tastan Bishop, Özlem, Medema, Marnix H., Wessjohann, Ludger A., Ludwig-Müller, Jutta
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1186/s13321-021-00546-8
http://hdl.handle.net/11449/229494
Resumo: We report the major conclusions of the online open-access workshop “Computational Applications in Secondary Metabolite Discovery (CAiSMD)” that took place from 08 to 10 March 2021. Invited speakers from academia and industry and about 200 registered participants from five continents (Africa, Asia, Europe, South America, and North America) took part in the workshop. The workshop highlighted the potential applications of computational methodologies in the search for secondary metabolites (SMs) or natural products (NPs) as potential drugs and drug leads. During 3 days, the participants of this online workshop received an overview of modern computer-based approaches for exploring NP discovery in the “omics” age. The invited experts gave keynote lectures, trained participants in hands-on sessions, and held round table discussions. This was followed by oral presentations with much interaction between the speakers and the audience. Selected applicants (early-career scientists) were offered the opportunity to give oral presentations (15 min) and present posters in the form of flash presentations (5 min) upon submission of an abstract. The final program available on the workshop website (https://caismd.indiayouth.info/) comprised of 4 keynote lectures (KLs), 12 oral presentations (OPs), 2 round table discussions (RTDs), and 5 hands-on sessions (HSs). This meeting report also references internet resources for computational biology in the area of secondary metabolites that are of use outside of the workshop areas and will constitute a long-term valuable source for the community. The workshop concluded with an online survey form to be completed by speakers and participants for the goal of improving any subsequent editions.
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spelling Computational Applications in Secondary Metabolite Discovery (CAiSMD): an online workshopBioinformaticsChemoinformaticsMetabolitesOnline workshopPredictionsWeb toolsWe report the major conclusions of the online open-access workshop “Computational Applications in Secondary Metabolite Discovery (CAiSMD)” that took place from 08 to 10 March 2021. Invited speakers from academia and industry and about 200 registered participants from five continents (Africa, Asia, Europe, South America, and North America) took part in the workshop. The workshop highlighted the potential applications of computational methodologies in the search for secondary metabolites (SMs) or natural products (NPs) as potential drugs and drug leads. During 3 days, the participants of this online workshop received an overview of modern computer-based approaches for exploring NP discovery in the “omics” age. The invited experts gave keynote lectures, trained participants in hands-on sessions, and held round table discussions. This was followed by oral presentations with much interaction between the speakers and the audience. Selected applicants (early-career scientists) were offered the opportunity to give oral presentations (15 min) and present posters in the form of flash presentations (5 min) upon submission of an abstract. The final program available on the workshop website (https://caismd.indiayouth.info/) comprised of 4 keynote lectures (KLs), 12 oral presentations (OPs), 2 round table discussions (RTDs), and 5 hands-on sessions (HSs). This meeting report also references internet resources for computational biology in the area of secondary metabolites that are of use outside of the workshop areas and will constitute a long-term valuable source for the community. The workshop concluded with an online survey form to be completed by speakers and participants for the goal of improving any subsequent editions.Deutscher Akademischer AustauschdienstDepartment of Chemistry University of Buea, P. O. Box 63Institute of Pharmacy Martin-Luther University of Halle-Wittenberg, Kurt-Mothes-Str. 3Institute of Botany Technische Universität Dresden, Zellescher Weg 20bTarunavadaanenasaha Muktbharatonnayana Samstha FoundationInstitute of Pharmaceutical Biology Technische Universität Braunschweig, Mendelssohnstrasse 1Department of Computer and Information Sciences Colege of Science and Technology Covenant University, Km. 10 Idiroko RdSchool of Pharmacy University of the Western CapeSouth African Medical Research Council Bioinformatics Unit South African National Bioinformatics Institute University of the Western CapeNuclei of Bioassays Biosynthesis and Ecophysiology of Natural Products (NuBBE) Department of Organic Chemistry Institute of Chemistry Sao Paulo State University–UNESPCorteva AgriscienceInstitute for Inorganic and Analytical Chemistry Friedrich Schiller UniversityCenter for Bioinformatics Universität HamburgDepartment of Chemistry and Computational Biology Unit (CBU) University of BergenPharmaceutical Bioinformatics Albert-Ludwigs-UniversityDIFACQUIM Research Group Department of Pharmacy School of Chemistry Universidad Nacional Autónoma de MéxicoErsilia Open Source InitiativeJoint IRB-BSC-CRG Programme in Computational Biology Institute for Research in Biomedicine (IRB Barcelona) The Barcelona Institute of Science and TechnologyDepartment of Chemistry University of DschangDepartment of Immunology School of Health Sciences Catholic University of Central Africa, BP 7871Department of Biochemistry and Molecular Biology University of Buea, P. O. Box 63Department of Physics Ecole Normale Supérieure University of Yaoundé I, BP. 47Bioinformatics and Computational Biology Lab Department of Microbiology Faculty of Sciences University of Maiduguri, P.M.B. 1069Department of Pharmaceutical and Medicinal Chemistry Faculty of Pharmaceutical Sciences University of Nigeria NsukkaDepartment of Chemistry St. John’s University of Tanzania, P. O. Box 47Research Unit in Bioinformatics (RUBi) Department of Biochemistry and Microbiology Rhodes UniversityComputer Aided Drug Design Lab KIET Group of InstitutionsBioinformatics Group Wageningen UniversityDepartment of Pharmaceutical Sciences Division of Pharmaceutical Chemistry University of ViennaThe Novo Nordisk Foundation Center for Biosustainability Technical University of DenmarkDepartment of Bioorganic Chemistry Leibniz Institute of Plant Biochemistry (IPB), Weinberg 3German Centre for Integrative Biodiversity Research (iDiv), Puschstraße 4Nuclei of Bioassays Biosynthesis and Ecophysiology of Natural Products (NuBBE) Department of Organic Chemistry Institute of Chemistry Sao Paulo State University–UNESPUniversity of BueaMartin-Luther University of Halle-WittenbergTechnische Universität DresdenTarunavadaanenasaha Muktbharatonnayana Samstha FoundationTechnische Universität BraunschweigCovenant UniversityUniversity of the Western CapeUniversidade Estadual Paulista (UNESP)Corteva AgriscienceFriedrich Schiller UniversityUniversität HamburgUniversity of BergenAlbert-Ludwigs-UniversityUniversidad Nacional Autónoma de MéxicoErsilia Open Source InitiativeThe Barcelona Institute of Science and TechnologyUniversity of DschangCatholic University of Central AfricaUniversity of Yaoundé IUniversity of MaiduguriUniversity of Nigeria NsukkaSt. John’s University of TanzaniaRhodes UniversityKIET Group of InstitutionsWageningen UniversityUniversity of ViennaTechnical University of DenmarkLeibniz Institute of Plant Biochemistry (IPB)German Centre for Integrative Biodiversity Research (iDiv)Ntie-Kang, FideleTelukunta, Kiran K.Fobofou, Serge A. T.Chukwudi Osamor, VictorEgieyeh, Samuel A.Valli, Marilia [UNESP]Djoumbou-Feunang, YannickSorokina, MariaStork, ConradMathai, NeannZierep, PaulChávez-Hernández, Ana L.Duran-Frigola, MiquelBabiaka, Smith B.Tematio Fouedjou, RomualdEni, Donatus B.Akame, SimeonArreyetta-Bawak, Augustine B.Ebob, Oyere T.Metuge, Jonathan A.Bekono, Boris D.Isa, Mustafa A.Onuku, RaphaelShadrack, Daniel M.Musyoka, Thommas M.Patil, Vaishali M.van der Hooft, Justin J. J.da Silva Bolzani, Vanderlan [UNESP]Medina-Franco, José L.Kirchmair, JohannesWeber, TilmannTastan Bishop, ÖzlemMedema, Marnix H.Wessjohann, Ludger A.Ludwig-Müller, Jutta2022-04-29T08:32:47Z2022-04-29T08:32:47Z2021-12-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1186/s13321-021-00546-8Journal of Cheminformatics, v. 13, n. 1, 2021.1758-2946http://hdl.handle.net/11449/22949410.1186/s13321-021-00546-82-s2.0-85114625773Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengJournal of Cheminformaticsinfo:eu-repo/semantics/openAccess2022-04-29T08:32:48Zoai:repositorio.unesp.br:11449/229494Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462022-04-29T08:32:48Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Computational Applications in Secondary Metabolite Discovery (CAiSMD): an online workshop
title Computational Applications in Secondary Metabolite Discovery (CAiSMD): an online workshop
spellingShingle Computational Applications in Secondary Metabolite Discovery (CAiSMD): an online workshop
Ntie-Kang, Fidele
Bioinformatics
Chemoinformatics
Metabolites
Online workshop
Predictions
Web tools
title_short Computational Applications in Secondary Metabolite Discovery (CAiSMD): an online workshop
title_full Computational Applications in Secondary Metabolite Discovery (CAiSMD): an online workshop
title_fullStr Computational Applications in Secondary Metabolite Discovery (CAiSMD): an online workshop
title_full_unstemmed Computational Applications in Secondary Metabolite Discovery (CAiSMD): an online workshop
title_sort Computational Applications in Secondary Metabolite Discovery (CAiSMD): an online workshop
author Ntie-Kang, Fidele
author_facet Ntie-Kang, Fidele
Telukunta, Kiran K.
Fobofou, Serge A. T.
Chukwudi Osamor, Victor
Egieyeh, Samuel A.
Valli, Marilia [UNESP]
Djoumbou-Feunang, Yannick
Sorokina, Maria
Stork, Conrad
Mathai, Neann
Zierep, Paul
Chávez-Hernández, Ana L.
Duran-Frigola, Miquel
Babiaka, Smith B.
Tematio Fouedjou, Romuald
Eni, Donatus B.
Akame, Simeon
Arreyetta-Bawak, Augustine B.
Ebob, Oyere T.
Metuge, Jonathan A.
Bekono, Boris D.
Isa, Mustafa A.
Onuku, Raphael
Shadrack, Daniel M.
Musyoka, Thommas M.
Patil, Vaishali M.
van der Hooft, Justin J. J.
da Silva Bolzani, Vanderlan [UNESP]
Medina-Franco, José L.
Kirchmair, Johannes
Weber, Tilmann
Tastan Bishop, Özlem
Medema, Marnix H.
Wessjohann, Ludger A.
Ludwig-Müller, Jutta
author_role author
author2 Telukunta, Kiran K.
Fobofou, Serge A. T.
Chukwudi Osamor, Victor
Egieyeh, Samuel A.
Valli, Marilia [UNESP]
Djoumbou-Feunang, Yannick
Sorokina, Maria
Stork, Conrad
Mathai, Neann
Zierep, Paul
Chávez-Hernández, Ana L.
Duran-Frigola, Miquel
Babiaka, Smith B.
Tematio Fouedjou, Romuald
Eni, Donatus B.
Akame, Simeon
Arreyetta-Bawak, Augustine B.
Ebob, Oyere T.
Metuge, Jonathan A.
Bekono, Boris D.
Isa, Mustafa A.
Onuku, Raphael
Shadrack, Daniel M.
Musyoka, Thommas M.
Patil, Vaishali M.
van der Hooft, Justin J. J.
da Silva Bolzani, Vanderlan [UNESP]
Medina-Franco, José L.
Kirchmair, Johannes
Weber, Tilmann
Tastan Bishop, Özlem
Medema, Marnix H.
Wessjohann, Ludger A.
Ludwig-Müller, Jutta
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv University of Buea
Martin-Luther University of Halle-Wittenberg
Technische Universität Dresden
Tarunavadaanenasaha Muktbharatonnayana Samstha Foundation
Technische Universität Braunschweig
Covenant University
University of the Western Cape
Universidade Estadual Paulista (UNESP)
Corteva Agriscience
Friedrich Schiller University
Universität Hamburg
University of Bergen
Albert-Ludwigs-University
Universidad Nacional Autónoma de México
Ersilia Open Source Initiative
The Barcelona Institute of Science and Technology
University of Dschang
Catholic University of Central Africa
University of Yaoundé I
University of Maiduguri
University of Nigeria Nsukka
St. John’s University of Tanzania
Rhodes University
KIET Group of Institutions
Wageningen University
University of Vienna
Technical University of Denmark
Leibniz Institute of Plant Biochemistry (IPB)
German Centre for Integrative Biodiversity Research (iDiv)
dc.contributor.author.fl_str_mv Ntie-Kang, Fidele
Telukunta, Kiran K.
Fobofou, Serge A. T.
Chukwudi Osamor, Victor
Egieyeh, Samuel A.
Valli, Marilia [UNESP]
Djoumbou-Feunang, Yannick
Sorokina, Maria
Stork, Conrad
Mathai, Neann
Zierep, Paul
Chávez-Hernández, Ana L.
Duran-Frigola, Miquel
Babiaka, Smith B.
Tematio Fouedjou, Romuald
Eni, Donatus B.
Akame, Simeon
Arreyetta-Bawak, Augustine B.
Ebob, Oyere T.
Metuge, Jonathan A.
Bekono, Boris D.
Isa, Mustafa A.
Onuku, Raphael
Shadrack, Daniel M.
Musyoka, Thommas M.
Patil, Vaishali M.
van der Hooft, Justin J. J.
da Silva Bolzani, Vanderlan [UNESP]
Medina-Franco, José L.
Kirchmair, Johannes
Weber, Tilmann
Tastan Bishop, Özlem
Medema, Marnix H.
Wessjohann, Ludger A.
Ludwig-Müller, Jutta
dc.subject.por.fl_str_mv Bioinformatics
Chemoinformatics
Metabolites
Online workshop
Predictions
Web tools
topic Bioinformatics
Chemoinformatics
Metabolites
Online workshop
Predictions
Web tools
description We report the major conclusions of the online open-access workshop “Computational Applications in Secondary Metabolite Discovery (CAiSMD)” that took place from 08 to 10 March 2021. Invited speakers from academia and industry and about 200 registered participants from five continents (Africa, Asia, Europe, South America, and North America) took part in the workshop. The workshop highlighted the potential applications of computational methodologies in the search for secondary metabolites (SMs) or natural products (NPs) as potential drugs and drug leads. During 3 days, the participants of this online workshop received an overview of modern computer-based approaches for exploring NP discovery in the “omics” age. The invited experts gave keynote lectures, trained participants in hands-on sessions, and held round table discussions. This was followed by oral presentations with much interaction between the speakers and the audience. Selected applicants (early-career scientists) were offered the opportunity to give oral presentations (15 min) and present posters in the form of flash presentations (5 min) upon submission of an abstract. The final program available on the workshop website (https://caismd.indiayouth.info/) comprised of 4 keynote lectures (KLs), 12 oral presentations (OPs), 2 round table discussions (RTDs), and 5 hands-on sessions (HSs). This meeting report also references internet resources for computational biology in the area of secondary metabolites that are of use outside of the workshop areas and will constitute a long-term valuable source for the community. The workshop concluded with an online survey form to be completed by speakers and participants for the goal of improving any subsequent editions.
publishDate 2021
dc.date.none.fl_str_mv 2021-12-01
2022-04-29T08:32:47Z
2022-04-29T08:32:47Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1186/s13321-021-00546-8
Journal of Cheminformatics, v. 13, n. 1, 2021.
1758-2946
http://hdl.handle.net/11449/229494
10.1186/s13321-021-00546-8
2-s2.0-85114625773
url http://dx.doi.org/10.1186/s13321-021-00546-8
http://hdl.handle.net/11449/229494
identifier_str_mv Journal of Cheminformatics, v. 13, n. 1, 2021.
1758-2946
10.1186/s13321-021-00546-8
2-s2.0-85114625773
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Journal of Cheminformatics
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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