Tree Species Classification in a Complex Brazilian Tropical Forest Using Hyperspectral and LiDAR Data

Detalhes bibliográficos
Autor(a) principal: Pereira Martins-Neto, Rorai [UNESP]
Data de Publicação: 2023
Outros Autores: Garcia Tommaselli, Antonio Maria [UNESP], Imai, Nilton Nobuhiro [UNESP], Honkavaara, Eija, Miltiadou, Milto, Saito Moriya, Erika Akemi [UNESP], David, Hassan Camil
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.3390/f14050945
http://hdl.handle.net/11449/248926
Resumo: This study experiments with different combinations of UAV hyperspectral data and LiDAR metrics for classifying eight tree species found in a Brazilian Atlantic Forest remnant, the most degraded Brazilian biome with high fragmentation but with huge structural complexity. The selection of the species was done based on the number of tree samples, which exist in the plot data and in the fact the UAV imagery does not acquire information below the forest canopy. Due to the complexity of the forest, only species that exist in the upper canopy of the remnant were included in the classification. A combination of hyperspectral UAV images and LiDAR point clouds were in the experiment. The hyperspectral images were photogrammetric and radiometric processed to obtain orthomosaics with reflectance factor values. Raw spectra were extracted from the trees, and vegetation indices (VIs) were calculated. Regarding the LiDAR data, both the point cloud—referred to as Peak Returns (PR)—and the full-waveform (FWF) LiDAR were included in this study. The point clouds were processed to normalize the intensities and heights, and different metrics for each data type (PR and FWF) were extracted. Segmentation was preformed semi-automatically using the superpixel algorithm, followed with manual correction to ensure precise tree crown delineation before tree species classification. Thirteen different classification scenarios were tested. The scenarios included spectral features and LiDAR metrics either combined or not. The best result was obtained with all features transformed with principal component analysis with an accuracy of 76%, which did not differ significantly from the scenarios using the raw spectra or VIs with PR or FWF LiDAR metrics. The combination of spectral data with geometric information from LiDAR improved the classification of tree species in a complex tropical forest, and these results can serve to inform management and conservation practices of these forest remnants.
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spelling Tree Species Classification in a Complex Brazilian Tropical Forest Using Hyperspectral and LiDAR DataBrazilian Atlantic Foresthyperspectral imagingLiDARsuperpixel segmentationtree species mappingThis study experiments with different combinations of UAV hyperspectral data and LiDAR metrics for classifying eight tree species found in a Brazilian Atlantic Forest remnant, the most degraded Brazilian biome with high fragmentation but with huge structural complexity. The selection of the species was done based on the number of tree samples, which exist in the plot data and in the fact the UAV imagery does not acquire information below the forest canopy. Due to the complexity of the forest, only species that exist in the upper canopy of the remnant were included in the classification. A combination of hyperspectral UAV images and LiDAR point clouds were in the experiment. The hyperspectral images were photogrammetric and radiometric processed to obtain orthomosaics with reflectance factor values. Raw spectra were extracted from the trees, and vegetation indices (VIs) were calculated. Regarding the LiDAR data, both the point cloud—referred to as Peak Returns (PR)—and the full-waveform (FWF) LiDAR were included in this study. The point clouds were processed to normalize the intensities and heights, and different metrics for each data type (PR and FWF) were extracted. Segmentation was preformed semi-automatically using the superpixel algorithm, followed with manual correction to ensure precise tree crown delineation before tree species classification. Thirteen different classification scenarios were tested. The scenarios included spectral features and LiDAR metrics either combined or not. The best result was obtained with all features transformed with principal component analysis with an accuracy of 76%, which did not differ significantly from the scenarios using the raw spectra or VIs with PR or FWF LiDAR metrics. The combination of spectral data with geometric information from LiDAR improved the classification of tree species in a complex tropical forest, and these results can serve to inform management and conservation practices of these forest remnants.Academy of FinlandFaculty of Forestry and Wood Sciences Czech University of Life Sciences Prague (CULS), Kamýcká 129Department of Cartography São Paulo State University (FCT/UNSEP), Roberto Simonsen 305, SPDepartment of Remote Sensing and Photogrammetry Finnish Geospatial Research Institute (FGI) National Land Survey of Finland (NLS), Vuorimiehentie 5Department of Geography University of Cambridge, Downing Site, 20 Downing PlaceBrazilian Forest Service (SFB), SCEN Trecho 2, Sede do Ibama, DFDepartment of Cartography São Paulo State University (FCT/UNSEP), Roberto Simonsen 305, SPAcademy of Finland: 273806Czech University of Life Sciences Prague (CULS)Universidade Estadual Paulista (UNESP)National Land Survey of Finland (NLS)University of CambridgeBrazilian Forest Service (SFB)Pereira Martins-Neto, Rorai [UNESP]Garcia Tommaselli, Antonio Maria [UNESP]Imai, Nilton Nobuhiro [UNESP]Honkavaara, EijaMiltiadou, MiltoSaito Moriya, Erika Akemi [UNESP]David, Hassan Camil2023-07-29T13:57:33Z2023-07-29T13:57:33Z2023-05-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.3390/f14050945Forests, v. 14, n. 5, 2023.1999-4907http://hdl.handle.net/11449/24892610.3390/f140509452-s2.0-85160791384Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengForestsinfo:eu-repo/semantics/openAccess2023-07-29T13:57:33Zoai:repositorio.unesp.br:11449/248926Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462023-07-29T13:57:33Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Tree Species Classification in a Complex Brazilian Tropical Forest Using Hyperspectral and LiDAR Data
title Tree Species Classification in a Complex Brazilian Tropical Forest Using Hyperspectral and LiDAR Data
spellingShingle Tree Species Classification in a Complex Brazilian Tropical Forest Using Hyperspectral and LiDAR Data
Pereira Martins-Neto, Rorai [UNESP]
Brazilian Atlantic Forest
hyperspectral imaging
LiDAR
superpixel segmentation
tree species mapping
title_short Tree Species Classification in a Complex Brazilian Tropical Forest Using Hyperspectral and LiDAR Data
title_full Tree Species Classification in a Complex Brazilian Tropical Forest Using Hyperspectral and LiDAR Data
title_fullStr Tree Species Classification in a Complex Brazilian Tropical Forest Using Hyperspectral and LiDAR Data
title_full_unstemmed Tree Species Classification in a Complex Brazilian Tropical Forest Using Hyperspectral and LiDAR Data
title_sort Tree Species Classification in a Complex Brazilian Tropical Forest Using Hyperspectral and LiDAR Data
author Pereira Martins-Neto, Rorai [UNESP]
author_facet Pereira Martins-Neto, Rorai [UNESP]
Garcia Tommaselli, Antonio Maria [UNESP]
Imai, Nilton Nobuhiro [UNESP]
Honkavaara, Eija
Miltiadou, Milto
Saito Moriya, Erika Akemi [UNESP]
David, Hassan Camil
author_role author
author2 Garcia Tommaselli, Antonio Maria [UNESP]
Imai, Nilton Nobuhiro [UNESP]
Honkavaara, Eija
Miltiadou, Milto
Saito Moriya, Erika Akemi [UNESP]
David, Hassan Camil
author2_role author
author
author
author
author
author
dc.contributor.none.fl_str_mv Czech University of Life Sciences Prague (CULS)
Universidade Estadual Paulista (UNESP)
National Land Survey of Finland (NLS)
University of Cambridge
Brazilian Forest Service (SFB)
dc.contributor.author.fl_str_mv Pereira Martins-Neto, Rorai [UNESP]
Garcia Tommaselli, Antonio Maria [UNESP]
Imai, Nilton Nobuhiro [UNESP]
Honkavaara, Eija
Miltiadou, Milto
Saito Moriya, Erika Akemi [UNESP]
David, Hassan Camil
dc.subject.por.fl_str_mv Brazilian Atlantic Forest
hyperspectral imaging
LiDAR
superpixel segmentation
tree species mapping
topic Brazilian Atlantic Forest
hyperspectral imaging
LiDAR
superpixel segmentation
tree species mapping
description This study experiments with different combinations of UAV hyperspectral data and LiDAR metrics for classifying eight tree species found in a Brazilian Atlantic Forest remnant, the most degraded Brazilian biome with high fragmentation but with huge structural complexity. The selection of the species was done based on the number of tree samples, which exist in the plot data and in the fact the UAV imagery does not acquire information below the forest canopy. Due to the complexity of the forest, only species that exist in the upper canopy of the remnant were included in the classification. A combination of hyperspectral UAV images and LiDAR point clouds were in the experiment. The hyperspectral images were photogrammetric and radiometric processed to obtain orthomosaics with reflectance factor values. Raw spectra were extracted from the trees, and vegetation indices (VIs) were calculated. Regarding the LiDAR data, both the point cloud—referred to as Peak Returns (PR)—and the full-waveform (FWF) LiDAR were included in this study. The point clouds were processed to normalize the intensities and heights, and different metrics for each data type (PR and FWF) were extracted. Segmentation was preformed semi-automatically using the superpixel algorithm, followed with manual correction to ensure precise tree crown delineation before tree species classification. Thirteen different classification scenarios were tested. The scenarios included spectral features and LiDAR metrics either combined or not. The best result was obtained with all features transformed with principal component analysis with an accuracy of 76%, which did not differ significantly from the scenarios using the raw spectra or VIs with PR or FWF LiDAR metrics. The combination of spectral data with geometric information from LiDAR improved the classification of tree species in a complex tropical forest, and these results can serve to inform management and conservation practices of these forest remnants.
publishDate 2023
dc.date.none.fl_str_mv 2023-07-29T13:57:33Z
2023-07-29T13:57:33Z
2023-05-01
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.3390/f14050945
Forests, v. 14, n. 5, 2023.
1999-4907
http://hdl.handle.net/11449/248926
10.3390/f14050945
2-s2.0-85160791384
url http://dx.doi.org/10.3390/f14050945
http://hdl.handle.net/11449/248926
identifier_str_mv Forests, v. 14, n. 5, 2023.
1999-4907
10.3390/f14050945
2-s2.0-85160791384
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Forests
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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