Land-Use System and Forest Floor Explain Prokaryotic Metacommunity Structuring and Spatial Turnover in Amazonian Forest-to-Pasture Conversion Areas
Autor(a) principal: | |
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Data de Publicação: | 2021 |
Outros Autores: | , , , , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.3389/fmicb.2021.657508 http://hdl.handle.net/11449/210299 |
Resumo: | Advancing extensive cattle production is a major threat to biodiversity conservation in Amazonia. The dominant vegetation cover has a drastic impact on soil microbial communities, affecting their composition, structure, and ecological services. Herein, we explored relationships between land-use, soil types, and forest floor compartments on the prokaryotic metacommunity structuring in Western Amazonia. Soil samples were taken in sites under high anthropogenic pressure and distributed along a +/- 800 km gradient. Additionally, the litter and a root layer, characteristic of the forest environment, were sampled. DNA was extracted, and metacommunity composition and structure were assessed through 16S rRNA gene sequencing. Prokaryotic metacommunities in the bulk soil were strongly affected by pH, base and aluminum saturation, Ca + Mg concentration, the sum of bases, and silt percentage, due to land-use management and natural differences among the soil types. Higher alpha, beta, and gamma diversities were observed in sites with higher soil pH and fertility, such as pasture soils or fertile soils of the state of Acre. When taking litter and root layer communities into account, the beta diversity was significantly higher in the forest floor than in pasture bulk soil for all study regions. Our results show that the forest floor's prokaryotic metacommunity performs a spatial turnover hitherto underestimated to the regional scale of diversity. |
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Land-Use System and Forest Floor Explain Prokaryotic Metacommunity Structuring and Spatial Turnover in Amazonian Forest-to-Pasture Conversion AreasAmazoniatropical rainforest16S rRNA genenext generation sequencingmicrobial biodiversityland-use changeprokaryotesAdvancing extensive cattle production is a major threat to biodiversity conservation in Amazonia. The dominant vegetation cover has a drastic impact on soil microbial communities, affecting their composition, structure, and ecological services. Herein, we explored relationships between land-use, soil types, and forest floor compartments on the prokaryotic metacommunity structuring in Western Amazonia. Soil samples were taken in sites under high anthropogenic pressure and distributed along a +/- 800 km gradient. Additionally, the litter and a root layer, characteristic of the forest environment, were sampled. DNA was extracted, and metacommunity composition and structure were assessed through 16S rRNA gene sequencing. Prokaryotic metacommunities in the bulk soil were strongly affected by pH, base and aluminum saturation, Ca + Mg concentration, the sum of bases, and silt percentage, due to land-use management and natural differences among the soil types. Higher alpha, beta, and gamma diversities were observed in sites with higher soil pH and fertility, such as pasture soils or fertile soils of the state of Acre. When taking litter and root layer communities into account, the beta diversity was significantly higher in the forest floor than in pasture bulk soil for all study regions. Our results show that the forest floor's prokaryotic metacommunity performs a spatial turnover hitherto underestimated to the regional scale of diversity.USAIDNational Academies of Sciences, Engineering, and Medicine of the United States (NAS)United States National Science FoundationConselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)Univ Fed Rural Rio De Janeiro, Dept Soil, Seropedica, BrazilIowa State Univ, Dept Agr & Biosyst Engn, Ames, IA USANatl Agrobiol Res Ctr, Embrapa Agrobiol, Seropedica, BrazilNatl Soil Res Ctr, Embrapa Solos, Rio De Janeiro, BrazilMichigan State Univ, Dept Plant Soil & Microbial Sci, E Lansing, MI USAUniv Fed Goias, Dept Vet Med, Goiania, Go, BrazilUniv Estadual Paulista, Dept Support Prod & Anim Hlth, Aracatuba, BrazilUniv Estadual Paulista, Dept Support Prod & Anim Hlth, Aracatuba, BrazilUSAID: AID-OAA-A-11-00012National Academies of Sciences, Engineering, and Medicine of the United States (NAS): 4299United States National Science Foundation: DBI-1356380United States National Science Foundation: DBI-1759892CNPq: 311796/2019-2CNPq: 165571/2017-9CAPES: 41/2018Frontiers Media SaUniv Fed Rural Rio De JaneiroIowa State UnivEmpresa Brasileira de Pesquisa Agropecuária (EMBRAPA)Michigan State UnivUniversidade Federal de Goiás (UFG)Universidade Estadual Paulista (Unesp)Rocha, Fernando IgneRibeiro, Thiago GoncalvesFontes, Marcelo AntoniolSchwab, StefanRodrigues Coelho, Marcia ReedLumbreras, Jose FranciscoFerreira da Motta, Paulo EmilioTeixeira, Wenceslau GeraldesCole, JamesBorsanelli, Ana CarolinaDutra, Iveraldo dos Santos [UNESP]Howe, AdinaOliveira, Aline Pacobahyba deJesus, Ederson da Conceicao2021-06-25T15:04:11Z2021-06-25T15:04:11Z2021-04-21info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article13http://dx.doi.org/10.3389/fmicb.2021.657508Frontiers In Microbiology. Lausanne: Frontiers Media Sa, v. 12, 13 p., 2021.1664-302Xhttp://hdl.handle.net/11449/21029910.3389/fmicb.2021.657508WOS:000647016700001Web of Sciencereponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengFrontiers In Microbiologyinfo:eu-repo/semantics/openAccess2024-09-04T19:15:39Zoai:repositorio.unesp.br:11449/210299Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestrepositoriounesp@unesp.bropendoar:29462024-09-04T19:15:39Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Land-Use System and Forest Floor Explain Prokaryotic Metacommunity Structuring and Spatial Turnover in Amazonian Forest-to-Pasture Conversion Areas |
title |
Land-Use System and Forest Floor Explain Prokaryotic Metacommunity Structuring and Spatial Turnover in Amazonian Forest-to-Pasture Conversion Areas |
spellingShingle |
Land-Use System and Forest Floor Explain Prokaryotic Metacommunity Structuring and Spatial Turnover in Amazonian Forest-to-Pasture Conversion Areas Rocha, Fernando Igne Amazonia tropical rainforest 16S rRNA gene next generation sequencing microbial biodiversity land-use change prokaryotes |
title_short |
Land-Use System and Forest Floor Explain Prokaryotic Metacommunity Structuring and Spatial Turnover in Amazonian Forest-to-Pasture Conversion Areas |
title_full |
Land-Use System and Forest Floor Explain Prokaryotic Metacommunity Structuring and Spatial Turnover in Amazonian Forest-to-Pasture Conversion Areas |
title_fullStr |
Land-Use System and Forest Floor Explain Prokaryotic Metacommunity Structuring and Spatial Turnover in Amazonian Forest-to-Pasture Conversion Areas |
title_full_unstemmed |
Land-Use System and Forest Floor Explain Prokaryotic Metacommunity Structuring and Spatial Turnover in Amazonian Forest-to-Pasture Conversion Areas |
title_sort |
Land-Use System and Forest Floor Explain Prokaryotic Metacommunity Structuring and Spatial Turnover in Amazonian Forest-to-Pasture Conversion Areas |
author |
Rocha, Fernando Igne |
author_facet |
Rocha, Fernando Igne Ribeiro, Thiago Goncalves Fontes, Marcelo Antoniol Schwab, Stefan Rodrigues Coelho, Marcia Reed Lumbreras, Jose Francisco Ferreira da Motta, Paulo Emilio Teixeira, Wenceslau Geraldes Cole, James Borsanelli, Ana Carolina Dutra, Iveraldo dos Santos [UNESP] Howe, Adina Oliveira, Aline Pacobahyba de Jesus, Ederson da Conceicao |
author_role |
author |
author2 |
Ribeiro, Thiago Goncalves Fontes, Marcelo Antoniol Schwab, Stefan Rodrigues Coelho, Marcia Reed Lumbreras, Jose Francisco Ferreira da Motta, Paulo Emilio Teixeira, Wenceslau Geraldes Cole, James Borsanelli, Ana Carolina Dutra, Iveraldo dos Santos [UNESP] Howe, Adina Oliveira, Aline Pacobahyba de Jesus, Ederson da Conceicao |
author2_role |
author author author author author author author author author author author author author |
dc.contributor.none.fl_str_mv |
Univ Fed Rural Rio De Janeiro Iowa State Univ Empresa Brasileira de Pesquisa Agropecuária (EMBRAPA) Michigan State Univ Universidade Federal de Goiás (UFG) Universidade Estadual Paulista (Unesp) |
dc.contributor.author.fl_str_mv |
Rocha, Fernando Igne Ribeiro, Thiago Goncalves Fontes, Marcelo Antoniol Schwab, Stefan Rodrigues Coelho, Marcia Reed Lumbreras, Jose Francisco Ferreira da Motta, Paulo Emilio Teixeira, Wenceslau Geraldes Cole, James Borsanelli, Ana Carolina Dutra, Iveraldo dos Santos [UNESP] Howe, Adina Oliveira, Aline Pacobahyba de Jesus, Ederson da Conceicao |
dc.subject.por.fl_str_mv |
Amazonia tropical rainforest 16S rRNA gene next generation sequencing microbial biodiversity land-use change prokaryotes |
topic |
Amazonia tropical rainforest 16S rRNA gene next generation sequencing microbial biodiversity land-use change prokaryotes |
description |
Advancing extensive cattle production is a major threat to biodiversity conservation in Amazonia. The dominant vegetation cover has a drastic impact on soil microbial communities, affecting their composition, structure, and ecological services. Herein, we explored relationships between land-use, soil types, and forest floor compartments on the prokaryotic metacommunity structuring in Western Amazonia. Soil samples were taken in sites under high anthropogenic pressure and distributed along a +/- 800 km gradient. Additionally, the litter and a root layer, characteristic of the forest environment, were sampled. DNA was extracted, and metacommunity composition and structure were assessed through 16S rRNA gene sequencing. Prokaryotic metacommunities in the bulk soil were strongly affected by pH, base and aluminum saturation, Ca + Mg concentration, the sum of bases, and silt percentage, due to land-use management and natural differences among the soil types. Higher alpha, beta, and gamma diversities were observed in sites with higher soil pH and fertility, such as pasture soils or fertile soils of the state of Acre. When taking litter and root layer communities into account, the beta diversity was significantly higher in the forest floor than in pasture bulk soil for all study regions. Our results show that the forest floor's prokaryotic metacommunity performs a spatial turnover hitherto underestimated to the regional scale of diversity. |
publishDate |
2021 |
dc.date.none.fl_str_mv |
2021-06-25T15:04:11Z 2021-06-25T15:04:11Z 2021-04-21 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.3389/fmicb.2021.657508 Frontiers In Microbiology. Lausanne: Frontiers Media Sa, v. 12, 13 p., 2021. 1664-302X http://hdl.handle.net/11449/210299 10.3389/fmicb.2021.657508 WOS:000647016700001 |
url |
http://dx.doi.org/10.3389/fmicb.2021.657508 http://hdl.handle.net/11449/210299 |
identifier_str_mv |
Frontiers In Microbiology. Lausanne: Frontiers Media Sa, v. 12, 13 p., 2021. 1664-302X 10.3389/fmicb.2021.657508 WOS:000647016700001 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Frontiers In Microbiology |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
13 |
dc.publisher.none.fl_str_mv |
Frontiers Media Sa |
publisher.none.fl_str_mv |
Frontiers Media Sa |
dc.source.none.fl_str_mv |
Web of Science reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
repositoriounesp@unesp.br |
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1810021395173736448 |