Land-Use System and Forest Floor Explain Prokaryotic Metacommunity Structuring and Spatial Turnover in Amazonian Forest-to-Pasture Conversion Areas

Detalhes bibliográficos
Autor(a) principal: Rocha, Fernando Igne
Data de Publicação: 2021
Outros Autores: Ribeiro, Thiago Goncalves, Fontes, Marcelo Antoniol, Schwab, Stefan, Rodrigues Coelho, Marcia Reed, Lumbreras, Jose Francisco, Ferreira da Motta, Paulo Emilio, Teixeira, Wenceslau Geraldes, Cole, James, Borsanelli, Ana Carolina, Dutra, Iveraldo dos Santos [UNESP], Howe, Adina, Oliveira, Aline Pacobahyba de, Jesus, Ederson da Conceicao
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.3389/fmicb.2021.657508
http://hdl.handle.net/11449/210299
Resumo: Advancing extensive cattle production is a major threat to biodiversity conservation in Amazonia. The dominant vegetation cover has a drastic impact on soil microbial communities, affecting their composition, structure, and ecological services. Herein, we explored relationships between land-use, soil types, and forest floor compartments on the prokaryotic metacommunity structuring in Western Amazonia. Soil samples were taken in sites under high anthropogenic pressure and distributed along a +/- 800 km gradient. Additionally, the litter and a root layer, characteristic of the forest environment, were sampled. DNA was extracted, and metacommunity composition and structure were assessed through 16S rRNA gene sequencing. Prokaryotic metacommunities in the bulk soil were strongly affected by pH, base and aluminum saturation, Ca + Mg concentration, the sum of bases, and silt percentage, due to land-use management and natural differences among the soil types. Higher alpha, beta, and gamma diversities were observed in sites with higher soil pH and fertility, such as pasture soils or fertile soils of the state of Acre. When taking litter and root layer communities into account, the beta diversity was significantly higher in the forest floor than in pasture bulk soil for all study regions. Our results show that the forest floor's prokaryotic metacommunity performs a spatial turnover hitherto underestimated to the regional scale of diversity.
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spelling Land-Use System and Forest Floor Explain Prokaryotic Metacommunity Structuring and Spatial Turnover in Amazonian Forest-to-Pasture Conversion AreasAmazoniatropical rainforest16S rRNA genenext generation sequencingmicrobial biodiversityland-use changeprokaryotesAdvancing extensive cattle production is a major threat to biodiversity conservation in Amazonia. The dominant vegetation cover has a drastic impact on soil microbial communities, affecting their composition, structure, and ecological services. Herein, we explored relationships between land-use, soil types, and forest floor compartments on the prokaryotic metacommunity structuring in Western Amazonia. Soil samples were taken in sites under high anthropogenic pressure and distributed along a +/- 800 km gradient. Additionally, the litter and a root layer, characteristic of the forest environment, were sampled. DNA was extracted, and metacommunity composition and structure were assessed through 16S rRNA gene sequencing. Prokaryotic metacommunities in the bulk soil were strongly affected by pH, base and aluminum saturation, Ca + Mg concentration, the sum of bases, and silt percentage, due to land-use management and natural differences among the soil types. Higher alpha, beta, and gamma diversities were observed in sites with higher soil pH and fertility, such as pasture soils or fertile soils of the state of Acre. When taking litter and root layer communities into account, the beta diversity was significantly higher in the forest floor than in pasture bulk soil for all study regions. Our results show that the forest floor's prokaryotic metacommunity performs a spatial turnover hitherto underestimated to the regional scale of diversity.USAIDNational Academies of Sciences, Engineering, and Medicine of the United States (NAS)United States National Science FoundationConselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)Univ Fed Rural Rio De Janeiro, Dept Soil, Seropedica, BrazilIowa State Univ, Dept Agr & Biosyst Engn, Ames, IA USANatl Agrobiol Res Ctr, Embrapa Agrobiol, Seropedica, BrazilNatl Soil Res Ctr, Embrapa Solos, Rio De Janeiro, BrazilMichigan State Univ, Dept Plant Soil & Microbial Sci, E Lansing, MI USAUniv Fed Goias, Dept Vet Med, Goiania, Go, BrazilUniv Estadual Paulista, Dept Support Prod & Anim Hlth, Aracatuba, BrazilUniv Estadual Paulista, Dept Support Prod & Anim Hlth, Aracatuba, BrazilUSAID: AID-OAA-A-11-00012National Academies of Sciences, Engineering, and Medicine of the United States (NAS): 4299United States National Science Foundation: DBI-1356380United States National Science Foundation: DBI-1759892CNPq: 311796/2019-2CNPq: 165571/2017-9CAPES: 41/2018Frontiers Media SaUniv Fed Rural Rio De JaneiroIowa State UnivEmpresa Brasileira de Pesquisa Agropecuária (EMBRAPA)Michigan State UnivUniversidade Federal de Goiás (UFG)Universidade Estadual Paulista (Unesp)Rocha, Fernando IgneRibeiro, Thiago GoncalvesFontes, Marcelo AntoniolSchwab, StefanRodrigues Coelho, Marcia ReedLumbreras, Jose FranciscoFerreira da Motta, Paulo EmilioTeixeira, Wenceslau GeraldesCole, JamesBorsanelli, Ana CarolinaDutra, Iveraldo dos Santos [UNESP]Howe, AdinaOliveira, Aline Pacobahyba deJesus, Ederson da Conceicao2021-06-25T15:04:11Z2021-06-25T15:04:11Z2021-04-21info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article13http://dx.doi.org/10.3389/fmicb.2021.657508Frontiers In Microbiology. Lausanne: Frontiers Media Sa, v. 12, 13 p., 2021.1664-302Xhttp://hdl.handle.net/11449/21029910.3389/fmicb.2021.657508WOS:000647016700001Web of Sciencereponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengFrontiers In Microbiologyinfo:eu-repo/semantics/openAccess2024-09-04T19:15:39Zoai:repositorio.unesp.br:11449/210299Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestrepositoriounesp@unesp.bropendoar:29462024-09-04T19:15:39Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Land-Use System and Forest Floor Explain Prokaryotic Metacommunity Structuring and Spatial Turnover in Amazonian Forest-to-Pasture Conversion Areas
title Land-Use System and Forest Floor Explain Prokaryotic Metacommunity Structuring and Spatial Turnover in Amazonian Forest-to-Pasture Conversion Areas
spellingShingle Land-Use System and Forest Floor Explain Prokaryotic Metacommunity Structuring and Spatial Turnover in Amazonian Forest-to-Pasture Conversion Areas
Rocha, Fernando Igne
Amazonia
tropical rainforest
16S rRNA gene
next generation sequencing
microbial biodiversity
land-use change
prokaryotes
title_short Land-Use System and Forest Floor Explain Prokaryotic Metacommunity Structuring and Spatial Turnover in Amazonian Forest-to-Pasture Conversion Areas
title_full Land-Use System and Forest Floor Explain Prokaryotic Metacommunity Structuring and Spatial Turnover in Amazonian Forest-to-Pasture Conversion Areas
title_fullStr Land-Use System and Forest Floor Explain Prokaryotic Metacommunity Structuring and Spatial Turnover in Amazonian Forest-to-Pasture Conversion Areas
title_full_unstemmed Land-Use System and Forest Floor Explain Prokaryotic Metacommunity Structuring and Spatial Turnover in Amazonian Forest-to-Pasture Conversion Areas
title_sort Land-Use System and Forest Floor Explain Prokaryotic Metacommunity Structuring and Spatial Turnover in Amazonian Forest-to-Pasture Conversion Areas
author Rocha, Fernando Igne
author_facet Rocha, Fernando Igne
Ribeiro, Thiago Goncalves
Fontes, Marcelo Antoniol
Schwab, Stefan
Rodrigues Coelho, Marcia Reed
Lumbreras, Jose Francisco
Ferreira da Motta, Paulo Emilio
Teixeira, Wenceslau Geraldes
Cole, James
Borsanelli, Ana Carolina
Dutra, Iveraldo dos Santos [UNESP]
Howe, Adina
Oliveira, Aline Pacobahyba de
Jesus, Ederson da Conceicao
author_role author
author2 Ribeiro, Thiago Goncalves
Fontes, Marcelo Antoniol
Schwab, Stefan
Rodrigues Coelho, Marcia Reed
Lumbreras, Jose Francisco
Ferreira da Motta, Paulo Emilio
Teixeira, Wenceslau Geraldes
Cole, James
Borsanelli, Ana Carolina
Dutra, Iveraldo dos Santos [UNESP]
Howe, Adina
Oliveira, Aline Pacobahyba de
Jesus, Ederson da Conceicao
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Univ Fed Rural Rio De Janeiro
Iowa State Univ
Empresa Brasileira de Pesquisa Agropecuária (EMBRAPA)
Michigan State Univ
Universidade Federal de Goiás (UFG)
Universidade Estadual Paulista (Unesp)
dc.contributor.author.fl_str_mv Rocha, Fernando Igne
Ribeiro, Thiago Goncalves
Fontes, Marcelo Antoniol
Schwab, Stefan
Rodrigues Coelho, Marcia Reed
Lumbreras, Jose Francisco
Ferreira da Motta, Paulo Emilio
Teixeira, Wenceslau Geraldes
Cole, James
Borsanelli, Ana Carolina
Dutra, Iveraldo dos Santos [UNESP]
Howe, Adina
Oliveira, Aline Pacobahyba de
Jesus, Ederson da Conceicao
dc.subject.por.fl_str_mv Amazonia
tropical rainforest
16S rRNA gene
next generation sequencing
microbial biodiversity
land-use change
prokaryotes
topic Amazonia
tropical rainforest
16S rRNA gene
next generation sequencing
microbial biodiversity
land-use change
prokaryotes
description Advancing extensive cattle production is a major threat to biodiversity conservation in Amazonia. The dominant vegetation cover has a drastic impact on soil microbial communities, affecting their composition, structure, and ecological services. Herein, we explored relationships between land-use, soil types, and forest floor compartments on the prokaryotic metacommunity structuring in Western Amazonia. Soil samples were taken in sites under high anthropogenic pressure and distributed along a +/- 800 km gradient. Additionally, the litter and a root layer, characteristic of the forest environment, were sampled. DNA was extracted, and metacommunity composition and structure were assessed through 16S rRNA gene sequencing. Prokaryotic metacommunities in the bulk soil were strongly affected by pH, base and aluminum saturation, Ca + Mg concentration, the sum of bases, and silt percentage, due to land-use management and natural differences among the soil types. Higher alpha, beta, and gamma diversities were observed in sites with higher soil pH and fertility, such as pasture soils or fertile soils of the state of Acre. When taking litter and root layer communities into account, the beta diversity was significantly higher in the forest floor than in pasture bulk soil for all study regions. Our results show that the forest floor's prokaryotic metacommunity performs a spatial turnover hitherto underestimated to the regional scale of diversity.
publishDate 2021
dc.date.none.fl_str_mv 2021-06-25T15:04:11Z
2021-06-25T15:04:11Z
2021-04-21
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.3389/fmicb.2021.657508
Frontiers In Microbiology. Lausanne: Frontiers Media Sa, v. 12, 13 p., 2021.
1664-302X
http://hdl.handle.net/11449/210299
10.3389/fmicb.2021.657508
WOS:000647016700001
url http://dx.doi.org/10.3389/fmicb.2021.657508
http://hdl.handle.net/11449/210299
identifier_str_mv Frontiers In Microbiology. Lausanne: Frontiers Media Sa, v. 12, 13 p., 2021.
1664-302X
10.3389/fmicb.2021.657508
WOS:000647016700001
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Frontiers In Microbiology
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 13
dc.publisher.none.fl_str_mv Frontiers Media Sa
publisher.none.fl_str_mv Frontiers Media Sa
dc.source.none.fl_str_mv Web of Science
reponame:Repositório Institucional da UNESP
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institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv repositoriounesp@unesp.br
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