Expression signatures of DNA repair genes correlate with survival prognosis of astrocytoma patients

Detalhes bibliográficos
Autor(a) principal: de Sousa, Juliana Ferreira
Data de Publicação: 2017
Outros Autores: Torrieri, Raul, Serafim, Rodolfo Bortolozo, Di Cristofaro, Luis Fernando Macedo, Escanfella, Fábio Dalbon, Ribeiro, Rodrigo, Zanette, Dalila Lucíola, Paçó-Larson, Maria Luisa, da Silva, Wilson Araujo, Tirapelli, Daniela Pretti da Cunha, Neder, Luciano, Carlotti, Carlos Gilberto, Valente, Valeria
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1177/1010428317694552
http://hdl.handle.net/11449/231396
Resumo: Astrocytomas are the most common primary brain tumors. They are very resistant to therapies and usually progress rapidly to high-grade lesions. Here, we investigated the potential role of DNA repair genes in astrocytoma progression and resistance. To this aim, we performed a polymerase chain reaction array-based analysis focused on DNA repair genes and searched for correlations between expression patters and survival prognoses. We found 19 genes significantly altered. Combining these genes in all possible arrangements, we found 421 expression signatures strongly associated with poor survival. Importantly, five genes (DDB2, EXO1, NEIL3, BRCA2, and BRIP1) were independently correlated with worse prognoses, revealing single-gene signatures. Moreover, silencing of EXO1, which is remarkably overexpressed, promoted faster restoration of double-strand breaks, while NEIL3 knockdown, also highly overexpressed, caused an increment in DNA damage and cell death after irradiation of glioblastoma cells. These results disclose the importance of DNA repair pathways for the maintenance of genomic stability of high-grade astrocytomas and suggest that EXO1 and NEIL3 overexpression confers more efficiency for double-strand break repair and resistance to reactive oxygen species, respectively. Thereby, we highlight these two genes as potentially related with tumor aggressiveness and promising candidates as novel therapeutic targets.
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spelling Expression signatures of DNA repair genes correlate with survival prognosis of astrocytoma patientsastrocytomaDNA repairgenomic instabilityglioblastomatumor progressionAstrocytomas are the most common primary brain tumors. They are very resistant to therapies and usually progress rapidly to high-grade lesions. Here, we investigated the potential role of DNA repair genes in astrocytoma progression and resistance. To this aim, we performed a polymerase chain reaction array-based analysis focused on DNA repair genes and searched for correlations between expression patters and survival prognoses. We found 19 genes significantly altered. Combining these genes in all possible arrangements, we found 421 expression signatures strongly associated with poor survival. Importantly, five genes (DDB2, EXO1, NEIL3, BRCA2, and BRIP1) were independently correlated with worse prognoses, revealing single-gene signatures. Moreover, silencing of EXO1, which is remarkably overexpressed, promoted faster restoration of double-strand breaks, while NEIL3 knockdown, also highly overexpressed, caused an increment in DNA damage and cell death after irradiation of glioblastoma cells. These results disclose the importance of DNA repair pathways for the maintenance of genomic stability of high-grade astrocytomas and suggest that EXO1 and NEIL3 overexpression confers more efficiency for double-strand break repair and resistance to reactive oxygen species, respectively. Thereby, we highlight these two genes as potentially related with tumor aggressiveness and promising candidates as novel therapeutic targets.Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Department of Clinical Analysis Faculty of Pharmaceutical Sciences of Araraquara University of São Paulo StateDepartment of Cellular and Molecular Biology Ribeirão Preto Medical School University of São Paulo (USP)FAEPA Center for Medical Genomics (CMG) of the Clinical Hospital Ribeirão Preto Medical School University of São Paulo (USP)Department of Genetics Ribeirão Preto Medical School University of São Paulo (USP)Regional Blood Center of Ribeirão Preto and Center for Cell-Based Therapy—CEPID/FAPESPNational Institute of Science and Technology in Stem cell and Cell TherapyCenter for Integrative Systems Biology (CISBi) NAP/USPDepartment of Surgery and Anatomy Ribeirão Preto Medical School University of São Paulo (USP)Department of Pathology Ribeirão Preto Medical School University of São Paulo (USP)FAPESP: 2013/13465-1Universidade de São Paulo (USP)Regional Blood Center of Ribeirão Preto and Center for Cell-Based Therapy—CEPID/FAPESPNational Institute of Science and Technology in Stem cell and Cell Therapyde Sousa, Juliana FerreiraTorrieri, RaulSerafim, Rodolfo BortolozoDi Cristofaro, Luis Fernando MacedoEscanfella, Fábio DalbonRibeiro, RodrigoZanette, Dalila LucíolaPaçó-Larson, Maria Luisada Silva, Wilson AraujoTirapelli, Daniela Pretti da CunhaNeder, LucianoCarlotti, Carlos GilbertoValente, Valeria2022-04-29T08:45:04Z2022-04-29T08:45:04Z2017-04-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1177/1010428317694552Tumor Biology, v. 39, n. 4, 2017.1423-03801010-4283http://hdl.handle.net/11449/23139610.1177/10104283176945522-s2.0-85017488547Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengTumor Biologyinfo:eu-repo/semantics/openAccess2024-09-03T13:14:54Zoai:repositorio.unesp.br:11449/231396Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestrepositoriounesp@unesp.bropendoar:29462024-09-03T13:14:54Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Expression signatures of DNA repair genes correlate with survival prognosis of astrocytoma patients
title Expression signatures of DNA repair genes correlate with survival prognosis of astrocytoma patients
spellingShingle Expression signatures of DNA repair genes correlate with survival prognosis of astrocytoma patients
de Sousa, Juliana Ferreira
astrocytoma
DNA repair
genomic instability
glioblastoma
tumor progression
title_short Expression signatures of DNA repair genes correlate with survival prognosis of astrocytoma patients
title_full Expression signatures of DNA repair genes correlate with survival prognosis of astrocytoma patients
title_fullStr Expression signatures of DNA repair genes correlate with survival prognosis of astrocytoma patients
title_full_unstemmed Expression signatures of DNA repair genes correlate with survival prognosis of astrocytoma patients
title_sort Expression signatures of DNA repair genes correlate with survival prognosis of astrocytoma patients
author de Sousa, Juliana Ferreira
author_facet de Sousa, Juliana Ferreira
Torrieri, Raul
Serafim, Rodolfo Bortolozo
Di Cristofaro, Luis Fernando Macedo
Escanfella, Fábio Dalbon
Ribeiro, Rodrigo
Zanette, Dalila Lucíola
Paçó-Larson, Maria Luisa
da Silva, Wilson Araujo
Tirapelli, Daniela Pretti da Cunha
Neder, Luciano
Carlotti, Carlos Gilberto
Valente, Valeria
author_role author
author2 Torrieri, Raul
Serafim, Rodolfo Bortolozo
Di Cristofaro, Luis Fernando Macedo
Escanfella, Fábio Dalbon
Ribeiro, Rodrigo
Zanette, Dalila Lucíola
Paçó-Larson, Maria Luisa
da Silva, Wilson Araujo
Tirapelli, Daniela Pretti da Cunha
Neder, Luciano
Carlotti, Carlos Gilberto
Valente, Valeria
author2_role author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade de São Paulo (USP)
Regional Blood Center of Ribeirão Preto and Center for Cell-Based Therapy—CEPID/FAPESP
National Institute of Science and Technology in Stem cell and Cell Therapy
dc.contributor.author.fl_str_mv de Sousa, Juliana Ferreira
Torrieri, Raul
Serafim, Rodolfo Bortolozo
Di Cristofaro, Luis Fernando Macedo
Escanfella, Fábio Dalbon
Ribeiro, Rodrigo
Zanette, Dalila Lucíola
Paçó-Larson, Maria Luisa
da Silva, Wilson Araujo
Tirapelli, Daniela Pretti da Cunha
Neder, Luciano
Carlotti, Carlos Gilberto
Valente, Valeria
dc.subject.por.fl_str_mv astrocytoma
DNA repair
genomic instability
glioblastoma
tumor progression
topic astrocytoma
DNA repair
genomic instability
glioblastoma
tumor progression
description Astrocytomas are the most common primary brain tumors. They are very resistant to therapies and usually progress rapidly to high-grade lesions. Here, we investigated the potential role of DNA repair genes in astrocytoma progression and resistance. To this aim, we performed a polymerase chain reaction array-based analysis focused on DNA repair genes and searched for correlations between expression patters and survival prognoses. We found 19 genes significantly altered. Combining these genes in all possible arrangements, we found 421 expression signatures strongly associated with poor survival. Importantly, five genes (DDB2, EXO1, NEIL3, BRCA2, and BRIP1) were independently correlated with worse prognoses, revealing single-gene signatures. Moreover, silencing of EXO1, which is remarkably overexpressed, promoted faster restoration of double-strand breaks, while NEIL3 knockdown, also highly overexpressed, caused an increment in DNA damage and cell death after irradiation of glioblastoma cells. These results disclose the importance of DNA repair pathways for the maintenance of genomic stability of high-grade astrocytomas and suggest that EXO1 and NEIL3 overexpression confers more efficiency for double-strand break repair and resistance to reactive oxygen species, respectively. Thereby, we highlight these two genes as potentially related with tumor aggressiveness and promising candidates as novel therapeutic targets.
publishDate 2017
dc.date.none.fl_str_mv 2017-04-01
2022-04-29T08:45:04Z
2022-04-29T08:45:04Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1177/1010428317694552
Tumor Biology, v. 39, n. 4, 2017.
1423-0380
1010-4283
http://hdl.handle.net/11449/231396
10.1177/1010428317694552
2-s2.0-85017488547
url http://dx.doi.org/10.1177/1010428317694552
http://hdl.handle.net/11449/231396
identifier_str_mv Tumor Biology, v. 39, n. 4, 2017.
1423-0380
1010-4283
10.1177/1010428317694552
2-s2.0-85017488547
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Tumor Biology
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv repositoriounesp@unesp.br
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