Expression signatures of DNA repair genes correlate with survival prognosis of astrocytoma patients
Autor(a) principal: | |
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Data de Publicação: | 2017 |
Outros Autores: | , , , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.1177/1010428317694552 http://hdl.handle.net/11449/231396 |
Resumo: | Astrocytomas are the most common primary brain tumors. They are very resistant to therapies and usually progress rapidly to high-grade lesions. Here, we investigated the potential role of DNA repair genes in astrocytoma progression and resistance. To this aim, we performed a polymerase chain reaction array-based analysis focused on DNA repair genes and searched for correlations between expression patters and survival prognoses. We found 19 genes significantly altered. Combining these genes in all possible arrangements, we found 421 expression signatures strongly associated with poor survival. Importantly, five genes (DDB2, EXO1, NEIL3, BRCA2, and BRIP1) were independently correlated with worse prognoses, revealing single-gene signatures. Moreover, silencing of EXO1, which is remarkably overexpressed, promoted faster restoration of double-strand breaks, while NEIL3 knockdown, also highly overexpressed, caused an increment in DNA damage and cell death after irradiation of glioblastoma cells. These results disclose the importance of DNA repair pathways for the maintenance of genomic stability of high-grade astrocytomas and suggest that EXO1 and NEIL3 overexpression confers more efficiency for double-strand break repair and resistance to reactive oxygen species, respectively. Thereby, we highlight these two genes as potentially related with tumor aggressiveness and promising candidates as novel therapeutic targets. |
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Expression signatures of DNA repair genes correlate with survival prognosis of astrocytoma patientsastrocytomaDNA repairgenomic instabilityglioblastomatumor progressionAstrocytomas are the most common primary brain tumors. They are very resistant to therapies and usually progress rapidly to high-grade lesions. Here, we investigated the potential role of DNA repair genes in astrocytoma progression and resistance. To this aim, we performed a polymerase chain reaction array-based analysis focused on DNA repair genes and searched for correlations between expression patters and survival prognoses. We found 19 genes significantly altered. Combining these genes in all possible arrangements, we found 421 expression signatures strongly associated with poor survival. Importantly, five genes (DDB2, EXO1, NEIL3, BRCA2, and BRIP1) were independently correlated with worse prognoses, revealing single-gene signatures. Moreover, silencing of EXO1, which is remarkably overexpressed, promoted faster restoration of double-strand breaks, while NEIL3 knockdown, also highly overexpressed, caused an increment in DNA damage and cell death after irradiation of glioblastoma cells. These results disclose the importance of DNA repair pathways for the maintenance of genomic stability of high-grade astrocytomas and suggest that EXO1 and NEIL3 overexpression confers more efficiency for double-strand break repair and resistance to reactive oxygen species, respectively. Thereby, we highlight these two genes as potentially related with tumor aggressiveness and promising candidates as novel therapeutic targets.Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Department of Clinical Analysis Faculty of Pharmaceutical Sciences of Araraquara University of São Paulo StateDepartment of Cellular and Molecular Biology Ribeirão Preto Medical School University of São Paulo (USP)FAEPA Center for Medical Genomics (CMG) of the Clinical Hospital Ribeirão Preto Medical School University of São Paulo (USP)Department of Genetics Ribeirão Preto Medical School University of São Paulo (USP)Regional Blood Center of Ribeirão Preto and Center for Cell-Based Therapy—CEPID/FAPESPNational Institute of Science and Technology in Stem cell and Cell TherapyCenter for Integrative Systems Biology (CISBi) NAP/USPDepartment of Surgery and Anatomy Ribeirão Preto Medical School University of São Paulo (USP)Department of Pathology Ribeirão Preto Medical School University of São Paulo (USP)FAPESP: 2013/13465-1Universidade de São Paulo (USP)Regional Blood Center of Ribeirão Preto and Center for Cell-Based Therapy—CEPID/FAPESPNational Institute of Science and Technology in Stem cell and Cell Therapyde Sousa, Juliana FerreiraTorrieri, RaulSerafim, Rodolfo BortolozoDi Cristofaro, Luis Fernando MacedoEscanfella, Fábio DalbonRibeiro, RodrigoZanette, Dalila LucíolaPaçó-Larson, Maria Luisada Silva, Wilson AraujoTirapelli, Daniela Pretti da CunhaNeder, LucianoCarlotti, Carlos GilbertoValente, Valeria2022-04-29T08:45:04Z2022-04-29T08:45:04Z2017-04-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1177/1010428317694552Tumor Biology, v. 39, n. 4, 2017.1423-03801010-4283http://hdl.handle.net/11449/23139610.1177/10104283176945522-s2.0-85017488547Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengTumor Biologyinfo:eu-repo/semantics/openAccess2024-09-03T13:14:54Zoai:repositorio.unesp.br:11449/231396Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestrepositoriounesp@unesp.bropendoar:29462024-09-03T13:14:54Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Expression signatures of DNA repair genes correlate with survival prognosis of astrocytoma patients |
title |
Expression signatures of DNA repair genes correlate with survival prognosis of astrocytoma patients |
spellingShingle |
Expression signatures of DNA repair genes correlate with survival prognosis of astrocytoma patients de Sousa, Juliana Ferreira astrocytoma DNA repair genomic instability glioblastoma tumor progression |
title_short |
Expression signatures of DNA repair genes correlate with survival prognosis of astrocytoma patients |
title_full |
Expression signatures of DNA repair genes correlate with survival prognosis of astrocytoma patients |
title_fullStr |
Expression signatures of DNA repair genes correlate with survival prognosis of astrocytoma patients |
title_full_unstemmed |
Expression signatures of DNA repair genes correlate with survival prognosis of astrocytoma patients |
title_sort |
Expression signatures of DNA repair genes correlate with survival prognosis of astrocytoma patients |
author |
de Sousa, Juliana Ferreira |
author_facet |
de Sousa, Juliana Ferreira Torrieri, Raul Serafim, Rodolfo Bortolozo Di Cristofaro, Luis Fernando Macedo Escanfella, Fábio Dalbon Ribeiro, Rodrigo Zanette, Dalila Lucíola Paçó-Larson, Maria Luisa da Silva, Wilson Araujo Tirapelli, Daniela Pretti da Cunha Neder, Luciano Carlotti, Carlos Gilberto Valente, Valeria |
author_role |
author |
author2 |
Torrieri, Raul Serafim, Rodolfo Bortolozo Di Cristofaro, Luis Fernando Macedo Escanfella, Fábio Dalbon Ribeiro, Rodrigo Zanette, Dalila Lucíola Paçó-Larson, Maria Luisa da Silva, Wilson Araujo Tirapelli, Daniela Pretti da Cunha Neder, Luciano Carlotti, Carlos Gilberto Valente, Valeria |
author2_role |
author author author author author author author author author author author author |
dc.contributor.none.fl_str_mv |
Universidade de São Paulo (USP) Regional Blood Center of Ribeirão Preto and Center for Cell-Based Therapy—CEPID/FAPESP National Institute of Science and Technology in Stem cell and Cell Therapy |
dc.contributor.author.fl_str_mv |
de Sousa, Juliana Ferreira Torrieri, Raul Serafim, Rodolfo Bortolozo Di Cristofaro, Luis Fernando Macedo Escanfella, Fábio Dalbon Ribeiro, Rodrigo Zanette, Dalila Lucíola Paçó-Larson, Maria Luisa da Silva, Wilson Araujo Tirapelli, Daniela Pretti da Cunha Neder, Luciano Carlotti, Carlos Gilberto Valente, Valeria |
dc.subject.por.fl_str_mv |
astrocytoma DNA repair genomic instability glioblastoma tumor progression |
topic |
astrocytoma DNA repair genomic instability glioblastoma tumor progression |
description |
Astrocytomas are the most common primary brain tumors. They are very resistant to therapies and usually progress rapidly to high-grade lesions. Here, we investigated the potential role of DNA repair genes in astrocytoma progression and resistance. To this aim, we performed a polymerase chain reaction array-based analysis focused on DNA repair genes and searched for correlations between expression patters and survival prognoses. We found 19 genes significantly altered. Combining these genes in all possible arrangements, we found 421 expression signatures strongly associated with poor survival. Importantly, five genes (DDB2, EXO1, NEIL3, BRCA2, and BRIP1) were independently correlated with worse prognoses, revealing single-gene signatures. Moreover, silencing of EXO1, which is remarkably overexpressed, promoted faster restoration of double-strand breaks, while NEIL3 knockdown, also highly overexpressed, caused an increment in DNA damage and cell death after irradiation of glioblastoma cells. These results disclose the importance of DNA repair pathways for the maintenance of genomic stability of high-grade astrocytomas and suggest that EXO1 and NEIL3 overexpression confers more efficiency for double-strand break repair and resistance to reactive oxygen species, respectively. Thereby, we highlight these two genes as potentially related with tumor aggressiveness and promising candidates as novel therapeutic targets. |
publishDate |
2017 |
dc.date.none.fl_str_mv |
2017-04-01 2022-04-29T08:45:04Z 2022-04-29T08:45:04Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1177/1010428317694552 Tumor Biology, v. 39, n. 4, 2017. 1423-0380 1010-4283 http://hdl.handle.net/11449/231396 10.1177/1010428317694552 2-s2.0-85017488547 |
url |
http://dx.doi.org/10.1177/1010428317694552 http://hdl.handle.net/11449/231396 |
identifier_str_mv |
Tumor Biology, v. 39, n. 4, 2017. 1423-0380 1010-4283 10.1177/1010428317694552 2-s2.0-85017488547 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Tumor Biology |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.source.none.fl_str_mv |
Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
repositoriounesp@unesp.br |
_version_ |
1810021377116209152 |