Exploring Folding Aspects of Monomeric Superoxide Dismutase

Detalhes bibliográficos
Autor(a) principal: Mouro, Paulo R. [UNESP]
Data de Publicação: 2020
Outros Autores: Povinelli, Ana P. R. [UNESP], Leite, Vitor B. P. [UNESP], Chahine, Jorge [UNESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1021/acs.jpcb.9b09640
http://hdl.handle.net/11449/201509
Resumo: Recent studies have associated the absence of bound metals (Apo protein) and mutations in Cu-Zn Human Superoxide Dismutase (SOD1) with amyotrophic lateral sclerosis (ALS) disease, suggesting mechanisms of SOD1 aggregation. Using a structure-based model and modifying the energy of interaction between amino acids in the metal-binding site, we detected differences between the folding of the apo and holo proteins. The presence of metal ions decreases the free-energy barrier and also suggests that the folding pathway may change to reach the native state. The kinetics of folding of the apo and holo forms also correlates with the amount of free-energy barrier in the folding process. Also, the stability of the native state is significantly affected by the absence of metal ions. Our results, obtained from a very simplified model, correlate with more detailed studies, which also have shown that the transition and the native states are affected by the absence of the metal ions, hindering the folding of SOD1 and decreasing the stability of the native state. Regarding the disulfide bond, the results show that its absence decreases the stability of the native structure but affects the transition state less, suggesting that it is possibly made late in the folding process.
id UNSP_787a95c50d1f5ab6c0100d6072933d8c
oai_identifier_str oai:repositorio.unesp.br:11449/201509
network_acronym_str UNSP
network_name_str Repositório Institucional da UNESP
repository_id_str 2946
spelling Exploring Folding Aspects of Monomeric Superoxide DismutaseRecent studies have associated the absence of bound metals (Apo protein) and mutations in Cu-Zn Human Superoxide Dismutase (SOD1) with amyotrophic lateral sclerosis (ALS) disease, suggesting mechanisms of SOD1 aggregation. Using a structure-based model and modifying the energy of interaction between amino acids in the metal-binding site, we detected differences between the folding of the apo and holo proteins. The presence of metal ions decreases the free-energy barrier and also suggests that the folding pathway may change to reach the native state. The kinetics of folding of the apo and holo forms also correlates with the amount of free-energy barrier in the folding process. Also, the stability of the native state is significantly affected by the absence of metal ions. Our results, obtained from a very simplified model, correlate with more detailed studies, which also have shown that the transition and the native states are affected by the absence of the metal ions, hindering the folding of SOD1 and decreasing the stability of the native state. Regarding the disulfide bond, the results show that its absence decreases the stability of the native structure but affects the transition state less, suggesting that it is possibly made late in the folding process.São Paulo State University (UNESP) IBILCECenter for Theoretical Biological Physics Rice UniversitySão Paulo State University (UNESP) IBILCEUniversidade Estadual Paulista (Unesp)Rice UniversityMouro, Paulo R. [UNESP]Povinelli, Ana P. R. [UNESP]Leite, Vitor B. P. [UNESP]Chahine, Jorge [UNESP]2020-12-12T02:34:25Z2020-12-12T02:34:25Z2020-01-30info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article650-661http://dx.doi.org/10.1021/acs.jpcb.9b09640Journal of Physical Chemistry B, v. 124, n. 4, p. 650-661, 2020.1520-52071520-6106http://hdl.handle.net/11449/20150910.1021/acs.jpcb.9b096402-s2.0-85078693653Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengJournal of Physical Chemistry Binfo:eu-repo/semantics/openAccess2021-10-22T20:04:27Zoai:repositorio.unesp.br:11449/201509Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462021-10-22T20:04:27Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Exploring Folding Aspects of Monomeric Superoxide Dismutase
title Exploring Folding Aspects of Monomeric Superoxide Dismutase
spellingShingle Exploring Folding Aspects of Monomeric Superoxide Dismutase
Mouro, Paulo R. [UNESP]
title_short Exploring Folding Aspects of Monomeric Superoxide Dismutase
title_full Exploring Folding Aspects of Monomeric Superoxide Dismutase
title_fullStr Exploring Folding Aspects of Monomeric Superoxide Dismutase
title_full_unstemmed Exploring Folding Aspects of Monomeric Superoxide Dismutase
title_sort Exploring Folding Aspects of Monomeric Superoxide Dismutase
author Mouro, Paulo R. [UNESP]
author_facet Mouro, Paulo R. [UNESP]
Povinelli, Ana P. R. [UNESP]
Leite, Vitor B. P. [UNESP]
Chahine, Jorge [UNESP]
author_role author
author2 Povinelli, Ana P. R. [UNESP]
Leite, Vitor B. P. [UNESP]
Chahine, Jorge [UNESP]
author2_role author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (Unesp)
Rice University
dc.contributor.author.fl_str_mv Mouro, Paulo R. [UNESP]
Povinelli, Ana P. R. [UNESP]
Leite, Vitor B. P. [UNESP]
Chahine, Jorge [UNESP]
description Recent studies have associated the absence of bound metals (Apo protein) and mutations in Cu-Zn Human Superoxide Dismutase (SOD1) with amyotrophic lateral sclerosis (ALS) disease, suggesting mechanisms of SOD1 aggregation. Using a structure-based model and modifying the energy of interaction between amino acids in the metal-binding site, we detected differences between the folding of the apo and holo proteins. The presence of metal ions decreases the free-energy barrier and also suggests that the folding pathway may change to reach the native state. The kinetics of folding of the apo and holo forms also correlates with the amount of free-energy barrier in the folding process. Also, the stability of the native state is significantly affected by the absence of metal ions. Our results, obtained from a very simplified model, correlate with more detailed studies, which also have shown that the transition and the native states are affected by the absence of the metal ions, hindering the folding of SOD1 and decreasing the stability of the native state. Regarding the disulfide bond, the results show that its absence decreases the stability of the native structure but affects the transition state less, suggesting that it is possibly made late in the folding process.
publishDate 2020
dc.date.none.fl_str_mv 2020-12-12T02:34:25Z
2020-12-12T02:34:25Z
2020-01-30
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1021/acs.jpcb.9b09640
Journal of Physical Chemistry B, v. 124, n. 4, p. 650-661, 2020.
1520-5207
1520-6106
http://hdl.handle.net/11449/201509
10.1021/acs.jpcb.9b09640
2-s2.0-85078693653
url http://dx.doi.org/10.1021/acs.jpcb.9b09640
http://hdl.handle.net/11449/201509
identifier_str_mv Journal of Physical Chemistry B, v. 124, n. 4, p. 650-661, 2020.
1520-5207
1520-6106
10.1021/acs.jpcb.9b09640
2-s2.0-85078693653
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Journal of Physical Chemistry B
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 650-661
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
_version_ 1803046447022604288