DNA Barcoding em Utricularia (Lentibulariaceae)

Detalhes bibliográficos
Autor(a) principal: Pena, Michelle Mendonça [UNESP]
Data de Publicação: 2015
Tipo de documento: Dissertação
Idioma: por
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://hdl.handle.net/11449/136705
Resumo: The family Lentibulariaceae Rich. is considered the largest group of carnivorous plants among the angiosperms. Utricularia is the richest genus with approximately 250 species. Several studies based on morphological identification have been published for the family Lentibulariaceae, but they are limited regarding some groups of species. Hence, DNA Barcoding may be an important alternative. The present study used DNA sequences of chloroplast intergenic spacers trnS-trnG and trnL-trnF and also the mitochondrial gene coxI in order to test them with the DNA Barcoding approach to intraspecific, interspecific and between sections differentiation in the Utricularia genus. Based on the distance analyses, the average intraspecific distance was 0.004 for both chloroplast markers and 0.006 for the coxI gene, the average interspecific distance was 0.260 to trnS-trnG, 0.190 to trnL-trnF, 0.043 to coxI and the average distance between sections was 0.036, 0.029 and 0.025 to trnS-trnG, trnL-trnF and coxI, respectively. The analysis based on Neighbor-Joining tree indicated that most species were grouped into sections according to the proposed for the phylogeny of the genus, forming monophyletic groups. The efficacy of interspecies discrimination was 82% to trnS-trnG and 61% to trnL-trnF, intraspecific discrimination was 36% to trnS-trnG and 23% to trnL-trnF. The mitochondrial gene coxI showed 24% of inter and intraspecific discrimination, with low resolution of species on trees Neighbor-Joining. These results demonstrate that the chloroplast regions have satisfactory information to separate species in clades that corroborate the phylogeny of the group and therefore trnS-trnG and trnL-trnF can be considered good barcodes for the Utricularia genus
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spelling DNA Barcoding em Utricularia (Lentibulariaceae)Plantas carnivorasDNAMitocondriaGenesMarcadores genéticosPlantas - Genetica molecularPlant molecular geneticsThe family Lentibulariaceae Rich. is considered the largest group of carnivorous plants among the angiosperms. Utricularia is the richest genus with approximately 250 species. Several studies based on morphological identification have been published for the family Lentibulariaceae, but they are limited regarding some groups of species. Hence, DNA Barcoding may be an important alternative. The present study used DNA sequences of chloroplast intergenic spacers trnS-trnG and trnL-trnF and also the mitochondrial gene coxI in order to test them with the DNA Barcoding approach to intraspecific, interspecific and between sections differentiation in the Utricularia genus. Based on the distance analyses, the average intraspecific distance was 0.004 for both chloroplast markers and 0.006 for the coxI gene, the average interspecific distance was 0.260 to trnS-trnG, 0.190 to trnL-trnF, 0.043 to coxI and the average distance between sections was 0.036, 0.029 and 0.025 to trnS-trnG, trnL-trnF and coxI, respectively. The analysis based on Neighbor-Joining tree indicated that most species were grouped into sections according to the proposed for the phylogeny of the genus, forming monophyletic groups. The efficacy of interspecies discrimination was 82% to trnS-trnG and 61% to trnL-trnF, intraspecific discrimination was 36% to trnS-trnG and 23% to trnL-trnF. The mitochondrial gene coxI showed 24% of inter and intraspecific discrimination, with low resolution of species on trees Neighbor-Joining. These results demonstrate that the chloroplast regions have satisfactory information to separate species in clades that corroborate the phylogeny of the group and therefore trnS-trnG and trnL-trnF can be considered good barcodes for the Utricularia genusA família Lentibulariaceae Rich. é considerada o maior grupo de plantas carnívoras dentre as angiospermas. Utricularia é o gênero de maior riqueza, com aproximadamente 250 espécies. Diversos estudos de identificação baseados em morfologia foram realizados para a família Lentibulariaceae, porém eles se mostram limitados para determinados grupos de espécies. Com base nisso a aplicação do DNA Barcoding pode ser uma importante alternativa. No presente estudo foram utilizadas sequências de DNA dos espaçadores intergênicos cloroplastidiais trnS-trnG e trnL-trnF e também do gene mitocondrial coxI com o objetivo de testá-las com a abordagem DNA Barcoding na diferenciação intraespecífica, interespecífica e entre as seções do gênero Utricularia. Com base nas matrizes de distâncias, a distância intraespecífica média foi de 0,004 para ambos os marcadores cloroplastidiais e de 0,006 para o gene coxI, a distância interespecífica média foi de 0,260 para trnS-trnG, 0,190 para trnL-trnF, 0,043 para coxI e a distância média entre as seções foi de 0,036, 0,029 e 0,025 para trnS-trnG, trnL-trnF e coxI, respectivamente. A análise baseada na árvore de Neighbor-Joining indicou que a maioria das espécies se agruparam em seções de acordo com o proposto para a filogenia do gênero, formando grupos monofiléticos. A eficácia de discriminação interespecífica foi 82% para trnS-trnG e 61% trnL-trnF, a discriminação intraespecífica foi de 36% para trnS-trnG e 23% para trnL-trnF. O gene mitocondrial coxI apresentou 24% de discriminação inter e intraespecífica, com resolução baixa de espécies na árvores de Neighbor-Joining. Esses resultados demonstram que as regiões cloroplastidiais apresentam informações satisfatórias para separação das espécies em clados que corroboram com a filogenia do grupo e que portanto trnS-trnG e trnL-trnF podem ser considerados bons barcodes para o...Universidade Estadual Paulista (Unesp)Miranda, Vitor Fernandes Oliveira de [UNESP]Varani, Alessandro de Mello [UNESP]Universidade Estadual Paulista (Unesp)Pena, Michelle Mendonça [UNESP]2016-04-01T17:54:52Z2016-04-01T17:54:52Z2015-07-15info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisiv, 109 p. : il.application/pdfPENA, Michelle Mendonça. DNA Barcoding em Utricularia (Lentibulariaceae). 2015. iv, 109 p. Dissertação (mestrado) - Universidade Estadual Paulista Júlio de Mesquita Filho, Faculdade de Ciências Agrárias e Veterinárias, 2015.http://hdl.handle.net/11449/136705000859555000859555.pdf33004102029P69429712259649346Alephreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPporinfo:eu-repo/semantics/openAccess2024-06-04T19:26:29Zoai:repositorio.unesp.br:11449/136705Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T23:44:18.923798Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv DNA Barcoding em Utricularia (Lentibulariaceae)
title DNA Barcoding em Utricularia (Lentibulariaceae)
spellingShingle DNA Barcoding em Utricularia (Lentibulariaceae)
Pena, Michelle Mendonça [UNESP]
Plantas carnivoras
DNA
Mitocondria
Genes
Marcadores genéticos
Plantas - Genetica molecular
Plant molecular genetics
title_short DNA Barcoding em Utricularia (Lentibulariaceae)
title_full DNA Barcoding em Utricularia (Lentibulariaceae)
title_fullStr DNA Barcoding em Utricularia (Lentibulariaceae)
title_full_unstemmed DNA Barcoding em Utricularia (Lentibulariaceae)
title_sort DNA Barcoding em Utricularia (Lentibulariaceae)
author Pena, Michelle Mendonça [UNESP]
author_facet Pena, Michelle Mendonça [UNESP]
author_role author
dc.contributor.none.fl_str_mv Miranda, Vitor Fernandes Oliveira de [UNESP]
Varani, Alessandro de Mello [UNESP]
Universidade Estadual Paulista (Unesp)
dc.contributor.author.fl_str_mv Pena, Michelle Mendonça [UNESP]
dc.subject.por.fl_str_mv Plantas carnivoras
DNA
Mitocondria
Genes
Marcadores genéticos
Plantas - Genetica molecular
Plant molecular genetics
topic Plantas carnivoras
DNA
Mitocondria
Genes
Marcadores genéticos
Plantas - Genetica molecular
Plant molecular genetics
description The family Lentibulariaceae Rich. is considered the largest group of carnivorous plants among the angiosperms. Utricularia is the richest genus with approximately 250 species. Several studies based on morphological identification have been published for the family Lentibulariaceae, but they are limited regarding some groups of species. Hence, DNA Barcoding may be an important alternative. The present study used DNA sequences of chloroplast intergenic spacers trnS-trnG and trnL-trnF and also the mitochondrial gene coxI in order to test them with the DNA Barcoding approach to intraspecific, interspecific and between sections differentiation in the Utricularia genus. Based on the distance analyses, the average intraspecific distance was 0.004 for both chloroplast markers and 0.006 for the coxI gene, the average interspecific distance was 0.260 to trnS-trnG, 0.190 to trnL-trnF, 0.043 to coxI and the average distance between sections was 0.036, 0.029 and 0.025 to trnS-trnG, trnL-trnF and coxI, respectively. The analysis based on Neighbor-Joining tree indicated that most species were grouped into sections according to the proposed for the phylogeny of the genus, forming monophyletic groups. The efficacy of interspecies discrimination was 82% to trnS-trnG and 61% to trnL-trnF, intraspecific discrimination was 36% to trnS-trnG and 23% to trnL-trnF. The mitochondrial gene coxI showed 24% of inter and intraspecific discrimination, with low resolution of species on trees Neighbor-Joining. These results demonstrate that the chloroplast regions have satisfactory information to separate species in clades that corroborate the phylogeny of the group and therefore trnS-trnG and trnL-trnF can be considered good barcodes for the Utricularia genus
publishDate 2015
dc.date.none.fl_str_mv 2015-07-15
2016-04-01T17:54:52Z
2016-04-01T17:54:52Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
format masterThesis
status_str publishedVersion
dc.identifier.uri.fl_str_mv PENA, Michelle Mendonça. DNA Barcoding em Utricularia (Lentibulariaceae). 2015. iv, 109 p. Dissertação (mestrado) - Universidade Estadual Paulista Júlio de Mesquita Filho, Faculdade de Ciências Agrárias e Veterinárias, 2015.
http://hdl.handle.net/11449/136705
000859555
000859555.pdf
33004102029P6
9429712259649346
identifier_str_mv PENA, Michelle Mendonça. DNA Barcoding em Utricularia (Lentibulariaceae). 2015. iv, 109 p. Dissertação (mestrado) - Universidade Estadual Paulista Júlio de Mesquita Filho, Faculdade de Ciências Agrárias e Veterinárias, 2015.
000859555
000859555.pdf
33004102029P6
9429712259649346
url http://hdl.handle.net/11449/136705
dc.language.iso.fl_str_mv por
language por
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv iv, 109 p. : il.
application/pdf
dc.publisher.none.fl_str_mv Universidade Estadual Paulista (Unesp)
publisher.none.fl_str_mv Universidade Estadual Paulista (Unesp)
dc.source.none.fl_str_mv Aleph
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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