Introduction of SARS-CoV-2 C.37 (WHO VOI lambda) in the Sao Paulo State, Southeast Brazil

Detalhes bibliográficos
Autor(a) principal: Kashima, Simone
Data de Publicação: 2022
Outros Autores: Slavov, Svetoslav N., Giovanetti, Marta, Rodrigues, Evandra S., Patané, José S. L., Viala, Vincent L., Santos, Elaine V., Evaristo, Mariane, de Lima, Loyze P. O., Martins, Antonio J., dos Santos Barros, Claudia R., Marqueze, Elaine C., Garibaldi, Pedro M. M., Ferreira, Natasha N., Moraes, Glenda R., Brassaloti, Ricardo A., Cassano, Raquel L. R. C., Mariani, Pilar D. S. C., Kitajima, João P., Schlesinger, David, Bezerra, Rafael S., Assato, Patricia A. [UNESP], da Costa, Felipe A. S. [UNESP], Poleti, Mirele Daiana, Lesbon, Jessika C. C., Mattos, Elisangela C., Banho, Cecilia A., Sacchetto, Lívia, Grotto, Rejane M. T. [UNESP], Souza-Neto, Jayme A. [UNESP], Fonseca, Vagner, de Alcantara, Luiz C. J., Nogueira, Maurício L., Fukumasu, Heidge, Coutinho, Luiz L., Borges, Marcos, Calado, Rodrigo T., Elias, Maria C., Sampaio, Sandra C., Covas, Dimas T.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1002/jmv.27389
http://hdl.handle.net/11449/222677
Resumo: The Lambda variants of interest (VOI) (C37/GR/452Q.V1/21G) was initially reported in Lima, Peru but has gained rapid dissemination through other Latin American countries. Nevertheless, the dissemination and molecular epidemiology of the Lambda VOI in Brazil is unknown apart from a single case report. In this respect, we characterized the circulation of the SARS-CoV-2 Lambda VOI (C37/GR/452Q.V1/21G) in Sao Paulo State, Brazil. From March to June 2021, we identified seven Lambda isolates in a set of approximately 8000 newly sequenced genomes of the Network for Pandemic Alert of Emerging SARS-CoV-2 variants from Sao Paulo State. Interestingly, in three of the positive patients, the Lambda VOI infection was probably related to a contact transmission. These individuals were fully vaccinated to COVID-19 and presented mild symptoms. The remaining positive for Lambda VOI individuals showed different levels of COVID-19 symptoms and one of them needed hospitalization (score 5, WHO). In our study, we present a low level of Lambda VOI circulation in the Sao Paulo State. This reinforces the essential role of molecular surveillance for the effective SARS-CoV-2 pandemic response, especially in regard to circulating variants.
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spelling Introduction of SARS-CoV-2 C.37 (WHO VOI lambda) in the Sao Paulo State, Southeast BrazilThe Lambda variants of interest (VOI) (C37/GR/452Q.V1/21G) was initially reported in Lima, Peru but has gained rapid dissemination through other Latin American countries. Nevertheless, the dissemination and molecular epidemiology of the Lambda VOI in Brazil is unknown apart from a single case report. In this respect, we characterized the circulation of the SARS-CoV-2 Lambda VOI (C37/GR/452Q.V1/21G) in Sao Paulo State, Brazil. From March to June 2021, we identified seven Lambda isolates in a set of approximately 8000 newly sequenced genomes of the Network for Pandemic Alert of Emerging SARS-CoV-2 variants from Sao Paulo State. Interestingly, in three of the positive patients, the Lambda VOI infection was probably related to a contact transmission. These individuals were fully vaccinated to COVID-19 and presented mild symptoms. The remaining positive for Lambda VOI individuals showed different levels of COVID-19 symptoms and one of them needed hospitalization (score 5, WHO). In our study, we present a low level of Lambda VOI circulation in the Sao Paulo State. This reinforces the essential role of molecular surveillance for the effective SARS-CoV-2 pandemic response, especially in regard to circulating variants.Blood Center of Ribeirão Preto Ribeirão Preto Medical School University of São PauloButantan InstituteInstituto de Ciências Biológicas Universidade Federal de Minas Gerais, Minas GeraisInstituto Oswaldo Cruz (FIOCRUZ)Ribeirão Preto Medical School University of São PauloSerrana State HospitalEpidemic ServiceCentro de Genômica Funcional da ESALQ University of São Paulo, SPNGS Soluções Genômicas, SPMendelics Análise Genômica SA, Sao PauloDepartment of Bioprocesses and Biotechnology School of Agricultural Sciences São Paulo State University (UNESP)Department of Veterinary Medicine School of Animal Science and Food Engineering University of Sao PauloMedicine School of São José do Rio Preto (FAMERP) São José do Rio PretoSchool of Agricultural Sciences São Paulo State University (UNESP)Molecular Biology Laboratory Applied Biotechnology Laboratory Clinical Hospital of the Botucatu Medical SchoolCoordenação Geral de Laboratórios de Saúde Pública/Secretaria de Vigilância em Saúde Ministério da Saúde (CGLAB/SVS-MS) BrasíliaDepartment of Bioprocesses and Biotechnology School of Agricultural Sciences São Paulo State University (UNESP)School of Agricultural Sciences São Paulo State University (UNESP)Molecular Biology Laboratory Applied Biotechnology Laboratory Clinical Hospital of the Botucatu Medical SchoolUniversidade de São Paulo (USP)Butantan InstituteUniversidade Federal de Minas Gerais (UFMG)Instituto Oswaldo Cruz (FIOCRUZ)Serrana State HospitalEpidemic ServiceNGS Soluções GenômicasMendelics Análise Genômica SAUniversidade Estadual Paulista (UNESP)São José do Rio Preto(CGLAB/SVS-MS) BrasíliaKashima, SimoneSlavov, Svetoslav N.Giovanetti, MartaRodrigues, Evandra S.Patané, José S. L.Viala, Vincent L.Santos, Elaine V.Evaristo, Marianede Lima, Loyze P. O.Martins, Antonio J.dos Santos Barros, Claudia R.Marqueze, Elaine C.Garibaldi, Pedro M. M.Ferreira, Natasha N.Moraes, Glenda R.Brassaloti, Ricardo A.Cassano, Raquel L. R. C.Mariani, Pilar D. S. C.Kitajima, João P.Schlesinger, DavidBezerra, Rafael S.Assato, Patricia A. [UNESP]da Costa, Felipe A. S. [UNESP]Poleti, Mirele DaianaLesbon, Jessika C. C.Mattos, Elisangela C.Banho, Cecilia A.Sacchetto, LíviaGrotto, Rejane M. T. [UNESP]Souza-Neto, Jayme A. [UNESP]Fonseca, Vagnerde Alcantara, Luiz C. J.Nogueira, Maurício L.Fukumasu, HeidgeCoutinho, Luiz L.Borges, MarcosCalado, Rodrigo T.Elias, Maria C.Sampaio, Sandra C.Covas, Dimas T.2022-04-28T19:46:04Z2022-04-28T19:46:04Z2022-03-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article1206-1211http://dx.doi.org/10.1002/jmv.27389Journal of Medical Virology, v. 94, n. 3, p. 1206-1211, 2022.1096-90710146-6615http://hdl.handle.net/11449/22267710.1002/jmv.273892-s2.0-85117351008Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengJournal of Medical Virologyinfo:eu-repo/semantics/openAccess2022-04-28T19:46:04Zoai:repositorio.unesp.br:11449/222677Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T20:57:13.131013Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Introduction of SARS-CoV-2 C.37 (WHO VOI lambda) in the Sao Paulo State, Southeast Brazil
title Introduction of SARS-CoV-2 C.37 (WHO VOI lambda) in the Sao Paulo State, Southeast Brazil
spellingShingle Introduction of SARS-CoV-2 C.37 (WHO VOI lambda) in the Sao Paulo State, Southeast Brazil
Kashima, Simone
title_short Introduction of SARS-CoV-2 C.37 (WHO VOI lambda) in the Sao Paulo State, Southeast Brazil
title_full Introduction of SARS-CoV-2 C.37 (WHO VOI lambda) in the Sao Paulo State, Southeast Brazil
title_fullStr Introduction of SARS-CoV-2 C.37 (WHO VOI lambda) in the Sao Paulo State, Southeast Brazil
title_full_unstemmed Introduction of SARS-CoV-2 C.37 (WHO VOI lambda) in the Sao Paulo State, Southeast Brazil
title_sort Introduction of SARS-CoV-2 C.37 (WHO VOI lambda) in the Sao Paulo State, Southeast Brazil
author Kashima, Simone
author_facet Kashima, Simone
Slavov, Svetoslav N.
Giovanetti, Marta
Rodrigues, Evandra S.
Patané, José S. L.
Viala, Vincent L.
Santos, Elaine V.
Evaristo, Mariane
de Lima, Loyze P. O.
Martins, Antonio J.
dos Santos Barros, Claudia R.
Marqueze, Elaine C.
Garibaldi, Pedro M. M.
Ferreira, Natasha N.
Moraes, Glenda R.
Brassaloti, Ricardo A.
Cassano, Raquel L. R. C.
Mariani, Pilar D. S. C.
Kitajima, João P.
Schlesinger, David
Bezerra, Rafael S.
Assato, Patricia A. [UNESP]
da Costa, Felipe A. S. [UNESP]
Poleti, Mirele Daiana
Lesbon, Jessika C. C.
Mattos, Elisangela C.
Banho, Cecilia A.
Sacchetto, Lívia
Grotto, Rejane M. T. [UNESP]
Souza-Neto, Jayme A. [UNESP]
Fonseca, Vagner
de Alcantara, Luiz C. J.
Nogueira, Maurício L.
Fukumasu, Heidge
Coutinho, Luiz L.
Borges, Marcos
Calado, Rodrigo T.
Elias, Maria C.
Sampaio, Sandra C.
Covas, Dimas T.
author_role author
author2 Slavov, Svetoslav N.
Giovanetti, Marta
Rodrigues, Evandra S.
Patané, José S. L.
Viala, Vincent L.
Santos, Elaine V.
Evaristo, Mariane
de Lima, Loyze P. O.
Martins, Antonio J.
dos Santos Barros, Claudia R.
Marqueze, Elaine C.
Garibaldi, Pedro M. M.
Ferreira, Natasha N.
Moraes, Glenda R.
Brassaloti, Ricardo A.
Cassano, Raquel L. R. C.
Mariani, Pilar D. S. C.
Kitajima, João P.
Schlesinger, David
Bezerra, Rafael S.
Assato, Patricia A. [UNESP]
da Costa, Felipe A. S. [UNESP]
Poleti, Mirele Daiana
Lesbon, Jessika C. C.
Mattos, Elisangela C.
Banho, Cecilia A.
Sacchetto, Lívia
Grotto, Rejane M. T. [UNESP]
Souza-Neto, Jayme A. [UNESP]
Fonseca, Vagner
de Alcantara, Luiz C. J.
Nogueira, Maurício L.
Fukumasu, Heidge
Coutinho, Luiz L.
Borges, Marcos
Calado, Rodrigo T.
Elias, Maria C.
Sampaio, Sandra C.
Covas, Dimas T.
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade de São Paulo (USP)
Butantan Institute
Universidade Federal de Minas Gerais (UFMG)
Instituto Oswaldo Cruz (FIOCRUZ)
Serrana State Hospital
Epidemic Service
NGS Soluções Genômicas
Mendelics Análise Genômica SA
Universidade Estadual Paulista (UNESP)
São José do Rio Preto
(CGLAB/SVS-MS) Brasília
dc.contributor.author.fl_str_mv Kashima, Simone
Slavov, Svetoslav N.
Giovanetti, Marta
Rodrigues, Evandra S.
Patané, José S. L.
Viala, Vincent L.
Santos, Elaine V.
Evaristo, Mariane
de Lima, Loyze P. O.
Martins, Antonio J.
dos Santos Barros, Claudia R.
Marqueze, Elaine C.
Garibaldi, Pedro M. M.
Ferreira, Natasha N.
Moraes, Glenda R.
Brassaloti, Ricardo A.
Cassano, Raquel L. R. C.
Mariani, Pilar D. S. C.
Kitajima, João P.
Schlesinger, David
Bezerra, Rafael S.
Assato, Patricia A. [UNESP]
da Costa, Felipe A. S. [UNESP]
Poleti, Mirele Daiana
Lesbon, Jessika C. C.
Mattos, Elisangela C.
Banho, Cecilia A.
Sacchetto, Lívia
Grotto, Rejane M. T. [UNESP]
Souza-Neto, Jayme A. [UNESP]
Fonseca, Vagner
de Alcantara, Luiz C. J.
Nogueira, Maurício L.
Fukumasu, Heidge
Coutinho, Luiz L.
Borges, Marcos
Calado, Rodrigo T.
Elias, Maria C.
Sampaio, Sandra C.
Covas, Dimas T.
description The Lambda variants of interest (VOI) (C37/GR/452Q.V1/21G) was initially reported in Lima, Peru but has gained rapid dissemination through other Latin American countries. Nevertheless, the dissemination and molecular epidemiology of the Lambda VOI in Brazil is unknown apart from a single case report. In this respect, we characterized the circulation of the SARS-CoV-2 Lambda VOI (C37/GR/452Q.V1/21G) in Sao Paulo State, Brazil. From March to June 2021, we identified seven Lambda isolates in a set of approximately 8000 newly sequenced genomes of the Network for Pandemic Alert of Emerging SARS-CoV-2 variants from Sao Paulo State. Interestingly, in three of the positive patients, the Lambda VOI infection was probably related to a contact transmission. These individuals were fully vaccinated to COVID-19 and presented mild symptoms. The remaining positive for Lambda VOI individuals showed different levels of COVID-19 symptoms and one of them needed hospitalization (score 5, WHO). In our study, we present a low level of Lambda VOI circulation in the Sao Paulo State. This reinforces the essential role of molecular surveillance for the effective SARS-CoV-2 pandemic response, especially in regard to circulating variants.
publishDate 2022
dc.date.none.fl_str_mv 2022-04-28T19:46:04Z
2022-04-28T19:46:04Z
2022-03-01
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1002/jmv.27389
Journal of Medical Virology, v. 94, n. 3, p. 1206-1211, 2022.
1096-9071
0146-6615
http://hdl.handle.net/11449/222677
10.1002/jmv.27389
2-s2.0-85117351008
url http://dx.doi.org/10.1002/jmv.27389
http://hdl.handle.net/11449/222677
identifier_str_mv Journal of Medical Virology, v. 94, n. 3, p. 1206-1211, 2022.
1096-9071
0146-6615
10.1002/jmv.27389
2-s2.0-85117351008
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Journal of Medical Virology
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 1206-1211
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
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instname_str Universidade Estadual Paulista (UNESP)
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reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
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