Introduction of SARS-CoV-2 C.37 (WHO VOI lambda) in the Sao Paulo State, Southeast Brazil
Autor(a) principal: | |
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Data de Publicação: | 2022 |
Outros Autores: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.1002/jmv.27389 http://hdl.handle.net/11449/222677 |
Resumo: | The Lambda variants of interest (VOI) (C37/GR/452Q.V1/21G) was initially reported in Lima, Peru but has gained rapid dissemination through other Latin American countries. Nevertheless, the dissemination and molecular epidemiology of the Lambda VOI in Brazil is unknown apart from a single case report. In this respect, we characterized the circulation of the SARS-CoV-2 Lambda VOI (C37/GR/452Q.V1/21G) in Sao Paulo State, Brazil. From March to June 2021, we identified seven Lambda isolates in a set of approximately 8000 newly sequenced genomes of the Network for Pandemic Alert of Emerging SARS-CoV-2 variants from Sao Paulo State. Interestingly, in three of the positive patients, the Lambda VOI infection was probably related to a contact transmission. These individuals were fully vaccinated to COVID-19 and presented mild symptoms. The remaining positive for Lambda VOI individuals showed different levels of COVID-19 symptoms and one of them needed hospitalization (score 5, WHO). In our study, we present a low level of Lambda VOI circulation in the Sao Paulo State. This reinforces the essential role of molecular surveillance for the effective SARS-CoV-2 pandemic response, especially in regard to circulating variants. |
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Introduction of SARS-CoV-2 C.37 (WHO VOI lambda) in the Sao Paulo State, Southeast BrazilThe Lambda variants of interest (VOI) (C37/GR/452Q.V1/21G) was initially reported in Lima, Peru but has gained rapid dissemination through other Latin American countries. Nevertheless, the dissemination and molecular epidemiology of the Lambda VOI in Brazil is unknown apart from a single case report. In this respect, we characterized the circulation of the SARS-CoV-2 Lambda VOI (C37/GR/452Q.V1/21G) in Sao Paulo State, Brazil. From March to June 2021, we identified seven Lambda isolates in a set of approximately 8000 newly sequenced genomes of the Network for Pandemic Alert of Emerging SARS-CoV-2 variants from Sao Paulo State. Interestingly, in three of the positive patients, the Lambda VOI infection was probably related to a contact transmission. These individuals were fully vaccinated to COVID-19 and presented mild symptoms. The remaining positive for Lambda VOI individuals showed different levels of COVID-19 symptoms and one of them needed hospitalization (score 5, WHO). In our study, we present a low level of Lambda VOI circulation in the Sao Paulo State. This reinforces the essential role of molecular surveillance for the effective SARS-CoV-2 pandemic response, especially in regard to circulating variants.Blood Center of Ribeirão Preto Ribeirão Preto Medical School University of São PauloButantan InstituteInstituto de Ciências Biológicas Universidade Federal de Minas Gerais, Minas GeraisInstituto Oswaldo Cruz (FIOCRUZ)Ribeirão Preto Medical School University of São PauloSerrana State HospitalEpidemic ServiceCentro de Genômica Funcional da ESALQ University of São Paulo, SPNGS Soluções Genômicas, SPMendelics Análise Genômica SA, Sao PauloDepartment of Bioprocesses and Biotechnology School of Agricultural Sciences São Paulo State University (UNESP)Department of Veterinary Medicine School of Animal Science and Food Engineering University of Sao PauloMedicine School of São José do Rio Preto (FAMERP) São José do Rio PretoSchool of Agricultural Sciences São Paulo State University (UNESP)Molecular Biology Laboratory Applied Biotechnology Laboratory Clinical Hospital of the Botucatu Medical SchoolCoordenação Geral de Laboratórios de Saúde Pública/Secretaria de Vigilância em Saúde Ministério da Saúde (CGLAB/SVS-MS) BrasíliaDepartment of Bioprocesses and Biotechnology School of Agricultural Sciences São Paulo State University (UNESP)School of Agricultural Sciences São Paulo State University (UNESP)Molecular Biology Laboratory Applied Biotechnology Laboratory Clinical Hospital of the Botucatu Medical SchoolUniversidade de São Paulo (USP)Butantan InstituteUniversidade Federal de Minas Gerais (UFMG)Instituto Oswaldo Cruz (FIOCRUZ)Serrana State HospitalEpidemic ServiceNGS Soluções GenômicasMendelics Análise Genômica SAUniversidade Estadual Paulista (UNESP)São José do Rio Preto(CGLAB/SVS-MS) BrasíliaKashima, SimoneSlavov, Svetoslav N.Giovanetti, MartaRodrigues, Evandra S.Patané, José S. L.Viala, Vincent L.Santos, Elaine V.Evaristo, Marianede Lima, Loyze P. O.Martins, Antonio J.dos Santos Barros, Claudia R.Marqueze, Elaine C.Garibaldi, Pedro M. M.Ferreira, Natasha N.Moraes, Glenda R.Brassaloti, Ricardo A.Cassano, Raquel L. R. C.Mariani, Pilar D. S. C.Kitajima, João P.Schlesinger, DavidBezerra, Rafael S.Assato, Patricia A. [UNESP]da Costa, Felipe A. S. [UNESP]Poleti, Mirele DaianaLesbon, Jessika C. C.Mattos, Elisangela C.Banho, Cecilia A.Sacchetto, LíviaGrotto, Rejane M. T. [UNESP]Souza-Neto, Jayme A. [UNESP]Fonseca, Vagnerde Alcantara, Luiz C. J.Nogueira, Maurício L.Fukumasu, HeidgeCoutinho, Luiz L.Borges, MarcosCalado, Rodrigo T.Elias, Maria C.Sampaio, Sandra C.Covas, Dimas T.2022-04-28T19:46:04Z2022-04-28T19:46:04Z2022-03-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article1206-1211http://dx.doi.org/10.1002/jmv.27389Journal of Medical Virology, v. 94, n. 3, p. 1206-1211, 2022.1096-90710146-6615http://hdl.handle.net/11449/22267710.1002/jmv.273892-s2.0-85117351008Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengJournal of Medical Virologyinfo:eu-repo/semantics/openAccess2022-04-28T19:46:04Zoai:repositorio.unesp.br:11449/222677Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T20:57:13.131013Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Introduction of SARS-CoV-2 C.37 (WHO VOI lambda) in the Sao Paulo State, Southeast Brazil |
title |
Introduction of SARS-CoV-2 C.37 (WHO VOI lambda) in the Sao Paulo State, Southeast Brazil |
spellingShingle |
Introduction of SARS-CoV-2 C.37 (WHO VOI lambda) in the Sao Paulo State, Southeast Brazil Kashima, Simone |
title_short |
Introduction of SARS-CoV-2 C.37 (WHO VOI lambda) in the Sao Paulo State, Southeast Brazil |
title_full |
Introduction of SARS-CoV-2 C.37 (WHO VOI lambda) in the Sao Paulo State, Southeast Brazil |
title_fullStr |
Introduction of SARS-CoV-2 C.37 (WHO VOI lambda) in the Sao Paulo State, Southeast Brazil |
title_full_unstemmed |
Introduction of SARS-CoV-2 C.37 (WHO VOI lambda) in the Sao Paulo State, Southeast Brazil |
title_sort |
Introduction of SARS-CoV-2 C.37 (WHO VOI lambda) in the Sao Paulo State, Southeast Brazil |
author |
Kashima, Simone |
author_facet |
Kashima, Simone Slavov, Svetoslav N. Giovanetti, Marta Rodrigues, Evandra S. Patané, José S. L. Viala, Vincent L. Santos, Elaine V. Evaristo, Mariane de Lima, Loyze P. O. Martins, Antonio J. dos Santos Barros, Claudia R. Marqueze, Elaine C. Garibaldi, Pedro M. M. Ferreira, Natasha N. Moraes, Glenda R. Brassaloti, Ricardo A. Cassano, Raquel L. R. C. Mariani, Pilar D. S. C. Kitajima, João P. Schlesinger, David Bezerra, Rafael S. Assato, Patricia A. [UNESP] da Costa, Felipe A. S. [UNESP] Poleti, Mirele Daiana Lesbon, Jessika C. C. Mattos, Elisangela C. Banho, Cecilia A. Sacchetto, Lívia Grotto, Rejane M. T. [UNESP] Souza-Neto, Jayme A. [UNESP] Fonseca, Vagner de Alcantara, Luiz C. J. Nogueira, Maurício L. Fukumasu, Heidge Coutinho, Luiz L. Borges, Marcos Calado, Rodrigo T. Elias, Maria C. Sampaio, Sandra C. Covas, Dimas T. |
author_role |
author |
author2 |
Slavov, Svetoslav N. Giovanetti, Marta Rodrigues, Evandra S. Patané, José S. L. Viala, Vincent L. Santos, Elaine V. Evaristo, Mariane de Lima, Loyze P. O. Martins, Antonio J. dos Santos Barros, Claudia R. Marqueze, Elaine C. Garibaldi, Pedro M. M. Ferreira, Natasha N. Moraes, Glenda R. Brassaloti, Ricardo A. Cassano, Raquel L. R. C. Mariani, Pilar D. S. C. Kitajima, João P. Schlesinger, David Bezerra, Rafael S. Assato, Patricia A. [UNESP] da Costa, Felipe A. S. [UNESP] Poleti, Mirele Daiana Lesbon, Jessika C. C. Mattos, Elisangela C. Banho, Cecilia A. Sacchetto, Lívia Grotto, Rejane M. T. [UNESP] Souza-Neto, Jayme A. [UNESP] Fonseca, Vagner de Alcantara, Luiz C. J. Nogueira, Maurício L. Fukumasu, Heidge Coutinho, Luiz L. Borges, Marcos Calado, Rodrigo T. Elias, Maria C. Sampaio, Sandra C. Covas, Dimas T. |
author2_role |
author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author |
dc.contributor.none.fl_str_mv |
Universidade de São Paulo (USP) Butantan Institute Universidade Federal de Minas Gerais (UFMG) Instituto Oswaldo Cruz (FIOCRUZ) Serrana State Hospital Epidemic Service NGS Soluções Genômicas Mendelics Análise Genômica SA Universidade Estadual Paulista (UNESP) São José do Rio Preto (CGLAB/SVS-MS) Brasília |
dc.contributor.author.fl_str_mv |
Kashima, Simone Slavov, Svetoslav N. Giovanetti, Marta Rodrigues, Evandra S. Patané, José S. L. Viala, Vincent L. Santos, Elaine V. Evaristo, Mariane de Lima, Loyze P. O. Martins, Antonio J. dos Santos Barros, Claudia R. Marqueze, Elaine C. Garibaldi, Pedro M. M. Ferreira, Natasha N. Moraes, Glenda R. Brassaloti, Ricardo A. Cassano, Raquel L. R. C. Mariani, Pilar D. S. C. Kitajima, João P. Schlesinger, David Bezerra, Rafael S. Assato, Patricia A. [UNESP] da Costa, Felipe A. S. [UNESP] Poleti, Mirele Daiana Lesbon, Jessika C. C. Mattos, Elisangela C. Banho, Cecilia A. Sacchetto, Lívia Grotto, Rejane M. T. [UNESP] Souza-Neto, Jayme A. [UNESP] Fonseca, Vagner de Alcantara, Luiz C. J. Nogueira, Maurício L. Fukumasu, Heidge Coutinho, Luiz L. Borges, Marcos Calado, Rodrigo T. Elias, Maria C. Sampaio, Sandra C. Covas, Dimas T. |
description |
The Lambda variants of interest (VOI) (C37/GR/452Q.V1/21G) was initially reported in Lima, Peru but has gained rapid dissemination through other Latin American countries. Nevertheless, the dissemination and molecular epidemiology of the Lambda VOI in Brazil is unknown apart from a single case report. In this respect, we characterized the circulation of the SARS-CoV-2 Lambda VOI (C37/GR/452Q.V1/21G) in Sao Paulo State, Brazil. From March to June 2021, we identified seven Lambda isolates in a set of approximately 8000 newly sequenced genomes of the Network for Pandemic Alert of Emerging SARS-CoV-2 variants from Sao Paulo State. Interestingly, in three of the positive patients, the Lambda VOI infection was probably related to a contact transmission. These individuals were fully vaccinated to COVID-19 and presented mild symptoms. The remaining positive for Lambda VOI individuals showed different levels of COVID-19 symptoms and one of them needed hospitalization (score 5, WHO). In our study, we present a low level of Lambda VOI circulation in the Sao Paulo State. This reinforces the essential role of molecular surveillance for the effective SARS-CoV-2 pandemic response, especially in regard to circulating variants. |
publishDate |
2022 |
dc.date.none.fl_str_mv |
2022-04-28T19:46:04Z 2022-04-28T19:46:04Z 2022-03-01 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1002/jmv.27389 Journal of Medical Virology, v. 94, n. 3, p. 1206-1211, 2022. 1096-9071 0146-6615 http://hdl.handle.net/11449/222677 10.1002/jmv.27389 2-s2.0-85117351008 |
url |
http://dx.doi.org/10.1002/jmv.27389 http://hdl.handle.net/11449/222677 |
identifier_str_mv |
Journal of Medical Virology, v. 94, n. 3, p. 1206-1211, 2022. 1096-9071 0146-6615 10.1002/jmv.27389 2-s2.0-85117351008 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
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Journal of Medical Virology |
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info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
1206-1211 |
dc.source.none.fl_str_mv |
Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
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1808129266580193280 |