Investigation of the functional role of human Interleukin-8 gene haplotypes by CRISPR/Cas9 mediated genome editing

Detalhes bibliográficos
Autor(a) principal: Benakanakere, Manjunatha R.
Data de Publicação: 2016
Outros Autores: Finoti, Livia S. [UNESP], Tanaka, Urara, Grant, Gregory R., Scarel-Caminaga, Raquel M. [UNESP], Kinane, Denis F.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1038/srep31180
http://hdl.handle.net/11449/173330
Resumo: Interleukin-8 (IL-8) gene polymorphisms have been considered as susceptibility factors in periodontal disease. However, the functional roles of IL-8 gene haplotypes have not been investigated. Here, we demonstrate for the first time the use of the CRISPR/Cas9 system to engineer the IL-8 gene, and tested the functionality of different haplotypes. Two sgRNAs vectors targeting the IL-8 gene and the naked homologous repair DNA carrying different haplotypes were used to successfully generate HEK293T cells carrying the AT genotype at the first SNP-rs4073 (alias-251), TT genotype at the second SNP-rs2227307 (alias +396), TC or CC genotypes at the third SNP-rs2227306 (alias +781) at the IL-8 locus. When stimulated with Poly I:C, ATC/TTC haplotype, cells significantly up-regulated the IL-8 at both transcriptional and translational levels. To test whether ATC/TTC haplotype is functional, we used a trans-well assay to measure the transmigration of primary neutrophils incubated with supernatants from the Poly I:C stimulation experiment. ATC/TTC haplotype cells significantly increased transmigration of neutrophils confirming the functional role for this IL-8 haplotype. Taken together, our data provides evidence that carriage of the ATC/TTC haplotype in itself may increase the influx of neutrophils in inflammatory lesions and influence disease susceptibility.
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spelling Investigation of the functional role of human Interleukin-8 gene haplotypes by CRISPR/Cas9 mediated genome editingInterleukin-8 (IL-8) gene polymorphisms have been considered as susceptibility factors in periodontal disease. However, the functional roles of IL-8 gene haplotypes have not been investigated. Here, we demonstrate for the first time the use of the CRISPR/Cas9 system to engineer the IL-8 gene, and tested the functionality of different haplotypes. Two sgRNAs vectors targeting the IL-8 gene and the naked homologous repair DNA carrying different haplotypes were used to successfully generate HEK293T cells carrying the AT genotype at the first SNP-rs4073 (alias-251), TT genotype at the second SNP-rs2227307 (alias +396), TC or CC genotypes at the third SNP-rs2227306 (alias +781) at the IL-8 locus. When stimulated with Poly I:C, ATC/TTC haplotype, cells significantly up-regulated the IL-8 at both transcriptional and translational levels. To test whether ATC/TTC haplotype is functional, we used a trans-well assay to measure the transmigration of primary neutrophils incubated with supernatants from the Poly I:C stimulation experiment. ATC/TTC haplotype cells significantly increased transmigration of neutrophils confirming the functional role for this IL-8 haplotype. Taken together, our data provides evidence that carriage of the ATC/TTC haplotype in itself may increase the influx of neutrophils in inflammatory lesions and influence disease susceptibility.National Institute of Dental and Craniofacial ResearchDepartment of Periodontics School of Dental Medicine University of PennsylvaniaDepartment of Oral Diagnosis and Surgery School of Dentistry at Araraquara UNESP-Univ EstadualDepartment of Genetics Perelman School of Medicine University of PennsylvaniaDepartment of Morphology School of Dentistry at Araraquara UNESP-Univ EstadualDepartment of Pathology School of Dental Medicine University of PennsylvaniaDepartment of Oral Diagnosis and Surgery School of Dentistry at Araraquara UNESP-Univ EstadualDepartment of Morphology School of Dentistry at Araraquara UNESP-Univ EstadualUniversity of PennsylvaniaUniversidade Estadual Paulista (Unesp)Benakanakere, Manjunatha R.Finoti, Livia S. [UNESP]Tanaka, UraraGrant, Gregory R.Scarel-Caminaga, Raquel M. [UNESP]Kinane, Denis F.2018-12-11T17:04:42Z2018-12-11T17:04:42Z2016-08-08info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://dx.doi.org/10.1038/srep31180Scientific Reports, v. 6.2045-2322http://hdl.handle.net/11449/17333010.1038/srep311802-s2.0-849812142702-s2.0-84981214270.pdfScopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengScientific Reports1,533info:eu-repo/semantics/openAccess2023-10-03T06:06:15Zoai:repositorio.unesp.br:11449/173330Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462023-10-03T06:06:15Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Investigation of the functional role of human Interleukin-8 gene haplotypes by CRISPR/Cas9 mediated genome editing
title Investigation of the functional role of human Interleukin-8 gene haplotypes by CRISPR/Cas9 mediated genome editing
spellingShingle Investigation of the functional role of human Interleukin-8 gene haplotypes by CRISPR/Cas9 mediated genome editing
Benakanakere, Manjunatha R.
title_short Investigation of the functional role of human Interleukin-8 gene haplotypes by CRISPR/Cas9 mediated genome editing
title_full Investigation of the functional role of human Interleukin-8 gene haplotypes by CRISPR/Cas9 mediated genome editing
title_fullStr Investigation of the functional role of human Interleukin-8 gene haplotypes by CRISPR/Cas9 mediated genome editing
title_full_unstemmed Investigation of the functional role of human Interleukin-8 gene haplotypes by CRISPR/Cas9 mediated genome editing
title_sort Investigation of the functional role of human Interleukin-8 gene haplotypes by CRISPR/Cas9 mediated genome editing
author Benakanakere, Manjunatha R.
author_facet Benakanakere, Manjunatha R.
Finoti, Livia S. [UNESP]
Tanaka, Urara
Grant, Gregory R.
Scarel-Caminaga, Raquel M. [UNESP]
Kinane, Denis F.
author_role author
author2 Finoti, Livia S. [UNESP]
Tanaka, Urara
Grant, Gregory R.
Scarel-Caminaga, Raquel M. [UNESP]
Kinane, Denis F.
author2_role author
author
author
author
author
dc.contributor.none.fl_str_mv University of Pennsylvania
Universidade Estadual Paulista (Unesp)
dc.contributor.author.fl_str_mv Benakanakere, Manjunatha R.
Finoti, Livia S. [UNESP]
Tanaka, Urara
Grant, Gregory R.
Scarel-Caminaga, Raquel M. [UNESP]
Kinane, Denis F.
description Interleukin-8 (IL-8) gene polymorphisms have been considered as susceptibility factors in periodontal disease. However, the functional roles of IL-8 gene haplotypes have not been investigated. Here, we demonstrate for the first time the use of the CRISPR/Cas9 system to engineer the IL-8 gene, and tested the functionality of different haplotypes. Two sgRNAs vectors targeting the IL-8 gene and the naked homologous repair DNA carrying different haplotypes were used to successfully generate HEK293T cells carrying the AT genotype at the first SNP-rs4073 (alias-251), TT genotype at the second SNP-rs2227307 (alias +396), TC or CC genotypes at the third SNP-rs2227306 (alias +781) at the IL-8 locus. When stimulated with Poly I:C, ATC/TTC haplotype, cells significantly up-regulated the IL-8 at both transcriptional and translational levels. To test whether ATC/TTC haplotype is functional, we used a trans-well assay to measure the transmigration of primary neutrophils incubated with supernatants from the Poly I:C stimulation experiment. ATC/TTC haplotype cells significantly increased transmigration of neutrophils confirming the functional role for this IL-8 haplotype. Taken together, our data provides evidence that carriage of the ATC/TTC haplotype in itself may increase the influx of neutrophils in inflammatory lesions and influence disease susceptibility.
publishDate 2016
dc.date.none.fl_str_mv 2016-08-08
2018-12-11T17:04:42Z
2018-12-11T17:04:42Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1038/srep31180
Scientific Reports, v. 6.
2045-2322
http://hdl.handle.net/11449/173330
10.1038/srep31180
2-s2.0-84981214270
2-s2.0-84981214270.pdf
url http://dx.doi.org/10.1038/srep31180
http://hdl.handle.net/11449/173330
identifier_str_mv Scientific Reports, v. 6.
2045-2322
10.1038/srep31180
2-s2.0-84981214270
2-s2.0-84981214270.pdf
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Scientific Reports
1,533
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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