Structure of a novel class II phospholipase D: Catalytic cleft is modified by a disulphide bridge
Autor(a) principal: | |
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Data de Publicação: | 2011 |
Outros Autores: | , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.1016/j.bbrc.2011.05.053 http://hdl.handle.net/11449/72498 |
Resumo: | Phospholipases D (PLDs) are principally responsible for the local and systemic effects of Loxosceles envenomation including dermonecrosis and hemolysis. Despite their clinical relevance in loxoscelism, to date, only the SMase I from Loxosceles laeta, a class I member, has been structurally characterized. The crystal structure of a class II member from Loxosceles intermedia venom has been determined at 1.7. Å resolution. Structural comparison to the class I member showed that the presence of an additional disulphide bridge which links the catalytic loop to the flexible loop significantly changes the volume and shape of the catalytic cleft. An examination of the crystal structures of PLD homologues in the presence of low molecular weight compounds at their active sites suggests the existence of a ligand-dependent rotamer conformation of the highly conserved residue Trp230 (equivalent to Trp192 in the glycerophosphodiester phosphodiesterase from Thermus thermophofilus, PDB code: 1VD6) indicating its role in substrate binding in both enzymes. Sequence and structural analyses suggest that the reduced sphingomyelinase activity observed in some class IIb PLDs is probably due to point mutations which lead to a different substrate preference. © 2011 Elsevier Inc. |
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Structure of a novel class II phospholipase D: Catalytic cleft is modified by a disulphide bridgeCrystal structureLoxosceles spider venomPhospholipase Dphosphodiesterasephospholipase Dsphingomyelin phosphodiesterasespider venomcatalysiscrystal structuredisulfide bondenzyme activityenzyme bindingmolecular weightnonhumanpriority journalspiderstructure analysisAmino Acid SequenceAnimalsCatalytic DomainCrystallography, X-RayCysteineMolecular Sequence DataSpider VenomsSpidersAraneaeLoxoscelesLoxosceles intermediaLoxosceles laetaThermusPhospholipases D (PLDs) are principally responsible for the local and systemic effects of Loxosceles envenomation including dermonecrosis and hemolysis. Despite their clinical relevance in loxoscelism, to date, only the SMase I from Loxosceles laeta, a class I member, has been structurally characterized. The crystal structure of a class II member from Loxosceles intermedia venom has been determined at 1.7. Å resolution. Structural comparison to the class I member showed that the presence of an additional disulphide bridge which links the catalytic loop to the flexible loop significantly changes the volume and shape of the catalytic cleft. An examination of the crystal structures of PLD homologues in the presence of low molecular weight compounds at their active sites suggests the existence of a ligand-dependent rotamer conformation of the highly conserved residue Trp230 (equivalent to Trp192 in the glycerophosphodiester phosphodiesterase from Thermus thermophofilus, PDB code: 1VD6) indicating its role in substrate binding in both enzymes. Sequence and structural analyses suggest that the reduced sphingomyelinase activity observed in some class IIb PLDs is probably due to point mutations which lead to a different substrate preference. © 2011 Elsevier Inc.Laboratório Nacional de Biociências (LNBio) Centro Nacional de Pesquisa em Energia e Materiais, Campinas, 13083-970 SPCentro Multiusuário de Inovação Biomolecular Departamento de Física Universidade Estadual Paulista (UNESP), São José do Rio Preto, 15054-000 SPDepartamento de Biologia Celular Universidade Federal do Paraná, Curitiba, 80060-000 PRDepartment of Structural Molecular Biology and Genetics State University of Ponta Grossa, Ponta Grossa, ParanáCentro Multiusuário de Inovação Biomolecular Departamento de Física Universidade Estadual Paulista (UNESP), São José do Rio Preto, 15054-000 SPCentro Nacional de Pesquisa em Energia e MateriaisUniversidade Estadual Paulista (Unesp)Universidade Federal do Paraná (UFPR)State University of Ponta Grossade Giuseppe, Priscila OliveiraUllah, Anwar [UNESP]Silva, Dilza TrevisanGremski, Luiza HelenaWille, Ana Carolina MartinsChaves Moreira, DanieleRibeiro, Andrea SenffChaim, Olga MeiriMurakami, Mario TyagoVeiga, Silvio SanchesArni, Raghuvir Krishnaswamy [UNESP]2014-05-27T11:25:55Z2014-05-27T11:25:55Z2011-06-17info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article622-627application/pdfhttp://dx.doi.org/10.1016/j.bbrc.2011.05.053Biochemical and Biophysical Research Communications, v. 409, n. 4, p. 622-627, 2011.0006-291X1090-2104http://hdl.handle.net/11449/7249810.1016/j.bbrc.2011.05.0532-s2.0-799592085672-s2.0-79959208567.pdf91625089789458870000-0003-2460-1145Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengBiochemical and Biophysical Research Communications2.5591,087info:eu-repo/semantics/openAccess2023-10-08T06:01:56Zoai:repositorio.unesp.br:11449/72498Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462023-10-08T06:01:56Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
Structure of a novel class II phospholipase D: Catalytic cleft is modified by a disulphide bridge |
title |
Structure of a novel class II phospholipase D: Catalytic cleft is modified by a disulphide bridge |
spellingShingle |
Structure of a novel class II phospholipase D: Catalytic cleft is modified by a disulphide bridge de Giuseppe, Priscila Oliveira Crystal structure Loxosceles spider venom Phospholipase D phosphodiesterase phospholipase D sphingomyelin phosphodiesterase spider venom catalysis crystal structure disulfide bond enzyme activity enzyme binding molecular weight nonhuman priority journal spider structure analysis Amino Acid Sequence Animals Catalytic Domain Crystallography, X-Ray Cysteine Molecular Sequence Data Spider Venoms Spiders Araneae Loxosceles Loxosceles intermedia Loxosceles laeta Thermus |
title_short |
Structure of a novel class II phospholipase D: Catalytic cleft is modified by a disulphide bridge |
title_full |
Structure of a novel class II phospholipase D: Catalytic cleft is modified by a disulphide bridge |
title_fullStr |
Structure of a novel class II phospholipase D: Catalytic cleft is modified by a disulphide bridge |
title_full_unstemmed |
Structure of a novel class II phospholipase D: Catalytic cleft is modified by a disulphide bridge |
title_sort |
Structure of a novel class II phospholipase D: Catalytic cleft is modified by a disulphide bridge |
author |
de Giuseppe, Priscila Oliveira |
author_facet |
de Giuseppe, Priscila Oliveira Ullah, Anwar [UNESP] Silva, Dilza Trevisan Gremski, Luiza Helena Wille, Ana Carolina Martins Chaves Moreira, Daniele Ribeiro, Andrea Senff Chaim, Olga Meiri Murakami, Mario Tyago Veiga, Silvio Sanches Arni, Raghuvir Krishnaswamy [UNESP] |
author_role |
author |
author2 |
Ullah, Anwar [UNESP] Silva, Dilza Trevisan Gremski, Luiza Helena Wille, Ana Carolina Martins Chaves Moreira, Daniele Ribeiro, Andrea Senff Chaim, Olga Meiri Murakami, Mario Tyago Veiga, Silvio Sanches Arni, Raghuvir Krishnaswamy [UNESP] |
author2_role |
author author author author author author author author author author |
dc.contributor.none.fl_str_mv |
Centro Nacional de Pesquisa em Energia e Materiais Universidade Estadual Paulista (Unesp) Universidade Federal do Paraná (UFPR) State University of Ponta Grossa |
dc.contributor.author.fl_str_mv |
de Giuseppe, Priscila Oliveira Ullah, Anwar [UNESP] Silva, Dilza Trevisan Gremski, Luiza Helena Wille, Ana Carolina Martins Chaves Moreira, Daniele Ribeiro, Andrea Senff Chaim, Olga Meiri Murakami, Mario Tyago Veiga, Silvio Sanches Arni, Raghuvir Krishnaswamy [UNESP] |
dc.subject.por.fl_str_mv |
Crystal structure Loxosceles spider venom Phospholipase D phosphodiesterase phospholipase D sphingomyelin phosphodiesterase spider venom catalysis crystal structure disulfide bond enzyme activity enzyme binding molecular weight nonhuman priority journal spider structure analysis Amino Acid Sequence Animals Catalytic Domain Crystallography, X-Ray Cysteine Molecular Sequence Data Spider Venoms Spiders Araneae Loxosceles Loxosceles intermedia Loxosceles laeta Thermus |
topic |
Crystal structure Loxosceles spider venom Phospholipase D phosphodiesterase phospholipase D sphingomyelin phosphodiesterase spider venom catalysis crystal structure disulfide bond enzyme activity enzyme binding molecular weight nonhuman priority journal spider structure analysis Amino Acid Sequence Animals Catalytic Domain Crystallography, X-Ray Cysteine Molecular Sequence Data Spider Venoms Spiders Araneae Loxosceles Loxosceles intermedia Loxosceles laeta Thermus |
description |
Phospholipases D (PLDs) are principally responsible for the local and systemic effects of Loxosceles envenomation including dermonecrosis and hemolysis. Despite their clinical relevance in loxoscelism, to date, only the SMase I from Loxosceles laeta, a class I member, has been structurally characterized. The crystal structure of a class II member from Loxosceles intermedia venom has been determined at 1.7. Å resolution. Structural comparison to the class I member showed that the presence of an additional disulphide bridge which links the catalytic loop to the flexible loop significantly changes the volume and shape of the catalytic cleft. An examination of the crystal structures of PLD homologues in the presence of low molecular weight compounds at their active sites suggests the existence of a ligand-dependent rotamer conformation of the highly conserved residue Trp230 (equivalent to Trp192 in the glycerophosphodiester phosphodiesterase from Thermus thermophofilus, PDB code: 1VD6) indicating its role in substrate binding in both enzymes. Sequence and structural analyses suggest that the reduced sphingomyelinase activity observed in some class IIb PLDs is probably due to point mutations which lead to a different substrate preference. © 2011 Elsevier Inc. |
publishDate |
2011 |
dc.date.none.fl_str_mv |
2011-06-17 2014-05-27T11:25:55Z 2014-05-27T11:25:55Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1016/j.bbrc.2011.05.053 Biochemical and Biophysical Research Communications, v. 409, n. 4, p. 622-627, 2011. 0006-291X 1090-2104 http://hdl.handle.net/11449/72498 10.1016/j.bbrc.2011.05.053 2-s2.0-79959208567 2-s2.0-79959208567.pdf 9162508978945887 0000-0003-2460-1145 |
url |
http://dx.doi.org/10.1016/j.bbrc.2011.05.053 http://hdl.handle.net/11449/72498 |
identifier_str_mv |
Biochemical and Biophysical Research Communications, v. 409, n. 4, p. 622-627, 2011. 0006-291X 1090-2104 10.1016/j.bbrc.2011.05.053 2-s2.0-79959208567 2-s2.0-79959208567.pdf 9162508978945887 0000-0003-2460-1145 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Biochemical and Biophysical Research Communications 2.559 1,087 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
622-627 application/pdf |
dc.source.none.fl_str_mv |
Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
|
_version_ |
1799964476045262848 |