The genome sequence of the gram-positive sugarcane pathogen Leifsonia xyli subsp. xyli

Detalhes bibliográficos
Autor(a) principal: Monteiro-Vitorello, Claudia B.
Data de Publicação: 2004
Outros Autores: Camargo, Luis E. A., Van Sluys, Marie A., Kitajima, João P., Truffi, Daniela, Do Amaral, Alexandre M., Harakava, Ricardo, De Oliveira, Julio C. F., Wood, Derek, De Oliveira, Mariana C., Miyaki, Cristina, Takita, Marco A., Da Silva, Ana C. R., Furlan, Luis R. [UNESP], Carraro, Dirce M., Camarotte, Giovana, Almeida Jr., Nalvo F., Carrer, Helaine, Coutinho, Luiz L., El-Dorry, Hamza A., Ferro, Maria I. T. [UNESP], Gagliardi, Paulo R., Giglioti, Eder, Goldman, Maria H. S., Goldman, Gustavo H., Kimura, Edna T., Ferro, Emer S., Kuramae, Eiko E. [UNESP], Lemos, Eliana G. M. [UNESP], Lemos, Manoel V. F. [UNESP], Mauro, Sonia M. Z. [UNESP], Machado, Marcos A., Marino, Celso L. [UNESP], Menck, Carlos F., Nunes, Luiz R., Oliveira, Regina C., Pereira, Gonçalo G., Siqueira, Walter, De Souza, Alessandra A., Tsai, Siu M., Zanca, A. S., Simpson, Andrew J. G., Brumbley, Stevens M., Setúbal, João C.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1094/MPMI.2004.17.8.827
http://hdl.handle.net/11449/67815
Resumo: The genome sequence of Leifsonia xyli subsp. xyli, which causes ratoon stunting disease and affects sugarcane worldwide, was determined. The single circular chromosome of Leifsonia xyli subsp. xyli CTCB07 was 2.6 Mb in length with a GC content of 68% and 2,044 predicted open reading frames. The analysis also revealed 307 predicted pseudogenes, which is more than any bacterial plant pathogen sequenced to date. Many of these pseudogenes, if functional, would likely be involved in the degradation of plant heteropolysaccharides, uptake of free sugars, and synthesis of amino acids. Although L. xyli subsp. xyli has only been identified colonizing the xylem vessels of sugarcane, the numbers of predicted regulatory genes and sugar transporters are similar to those in free-living organisms. Some of the predicted pathogenicity genes appear to have been acquired by lateral transfer and include genes for cellulase, pectinase, wilt-inducing protein, lysozyme, and desaturase. The presence of the latter may contribute to stunting, since it is likely involved in the synthesis of abscisic acid, a hormone that arrests growth. Our findings are consistent with the nutritionally fastidious behavior exhibited by L. xyli subsp. xyli and suggest an ongoing adaptation to the restricted ecological niche it inhabits.
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spelling The genome sequence of the gram-positive sugarcane pathogen Leifsonia xyli subsp. xyliActinomycetalesbacterial genebacterial genomeclassificationDNA base compositiongeneticsmicrobiologymolecular geneticsnucleotide sequencepseudogenesugarcaneBase CompositionGenes, BacterialGenome, BacterialMolecular Sequence DataPseudogenesSaccharumActinobacteria (class)Bacteria (microorganisms)LeifsoniaLeifsonia xyli subsp. xyliPosibacteriaProkaryotaSaccharum hybrid cultivaruncultured actinomyceteThe genome sequence of Leifsonia xyli subsp. xyli, which causes ratoon stunting disease and affects sugarcane worldwide, was determined. The single circular chromosome of Leifsonia xyli subsp. xyli CTCB07 was 2.6 Mb in length with a GC content of 68% and 2,044 predicted open reading frames. The analysis also revealed 307 predicted pseudogenes, which is more than any bacterial plant pathogen sequenced to date. Many of these pseudogenes, if functional, would likely be involved in the degradation of plant heteropolysaccharides, uptake of free sugars, and synthesis of amino acids. Although L. xyli subsp. xyli has only been identified colonizing the xylem vessels of sugarcane, the numbers of predicted regulatory genes and sugar transporters are similar to those in free-living organisms. Some of the predicted pathogenicity genes appear to have been acquired by lateral transfer and include genes for cellulase, pectinase, wilt-inducing protein, lysozyme, and desaturase. The presence of the latter may contribute to stunting, since it is likely involved in the synthesis of abscisic acid, a hormone that arrests growth. Our findings are consistent with the nutritionally fastidious behavior exhibited by L. xyli subsp. xyli and suggest an ongoing adaptation to the restricted ecological niche it inhabits.Esc. Sup. de Agric. Luiz de Queiroz Universidade de São Paulo, Av. Pádua Dias, 11, 13418-900, Piracicaba, SPInstituto de Biociências Universidade de São Paulo, R. do Matão, 277, 05508-900, São Paulo, SPAlellyx Applied Genomics, R. James Clerk Maxwell 320, 13067-850, Campinas, SPEmbrapa Recurs. Geneticos B., 70770-900 Brasília-DFInstituto Biológico, Av. C. Rodrigues Alves, 1252, 04014-002, São Paulo, SPFaculdade Cie. Agrarias Veterinarias Universidade Estadual Paulista, Av. Prof. Paulo D, Castellane s/n, 14884-900, Jaboticabal, SPDept. of Microbiology University of Washington HSB, Seattle, WA 98195-7242Ctro. de Citricultura Sylvio Moreira, 13490-000, Cordeirópolis, SPInstituto de Química Universidade de São Paulo, Av. Prof. Lineu Prestes, 748, 05508-900, São Paulo, SPFaculdade de Cie. Agronômicas Universidade Estadual Paulista, C. P. 237, 18603-970, Botucatu, SPInst. Ludwig Pesquisa Sobre O Cancer, Rua Prof. Antonio Prudente, 109, 01509-010, São Paulo, SPCtro. de Cie. Exatas e Tecnologia Univ. Federal do Mato Grosso do Sul, C. P. 549, 79070-900, Campo Grande, MSCtro. de Ciê. Agrárias Univ. Federal de São Carlos, C. P. 153, 13600-970, Araras, SPFaculdade de Filosofia Ciências e Letras Universidade de São Paulo, Av. Bandeirantes, 3900, 14040-901, Ribeirão Preto, SPFaculdade Cie. Farmaceuticas R. Universidade de São Paulo, Av. do Café S/N, 14040-903, Ribeirão Preto, SPInst. de Ciê. Bioméd. Universidade de São Paulo, Av. Prof. Lineu Prestes, 1374, 05508-900, São Paulo, SPInstituto de Biociências Universidade Estadual Paulista, 18618-000, Botucatu, SPNucleo Integrado de Biotecnologia Universidade de Mogi Das Cruzes, Av. Dr. C. Xavier Almeida Souza, 200, 08780-911, Mogi das Cruzes, SPInstituto de Biociências Universidade Estadual de Campinas, C. P. 6109, 13083-970, Campinas, SPInst. Agronômico de Campinas, C. P. 28, 13001-970, Campinas, SPCtro. de Ener. Nucl. na Agricultura Universidade de São Paulo, C. P. 96, 13400-970, Piracicaba, SPLudwig Institute for Cancer Research, 605 Third Avenue, New York, NY 10158BSES Limited, 50 Meiers Road, Indooroopilly, QLD 4068CRC for Tropical Plant Protection University of Queensland, St. Lucia, QLD 4072Instituto de Computação Universidade Estadual de Campinas, C.P. 6176, Campinas, SP, 13084-971Faculdade Cie. Agrarias Veterinarias Universidade Estadual Paulista, Av. Prof. Paulo D, Castellane s/n, 14884-900, Jaboticabal, SPFaculdade de Cie. Agronômicas Universidade Estadual Paulista, C. P. 237, 18603-970, Botucatu, SPInstituto de Biociências Universidade Estadual Paulista, 18618-000, Botucatu, SPUniversidade de São Paulo (USP)Alellyx Applied GenomicsEmpresa Brasileira de Pesquisa Agropecuária (EMBRAPA)Instituto BiológicoUniversidade Estadual Paulista (Unesp)HSBCtro. de Citricultura Sylvio MoreiraInst. Ludwig Pesquisa Sobre O CancerUniv. Federal do Mato Grosso do SulUniversidade Federal de São Carlos (UFSCar)Universidade de Mogi Das CruzesUniversidade Estadual de Campinas (UNICAMP)Inst. Agronômico de CampinasLudwig Institute for Cancer ResearchBSES LimitedUniversity of QueenslandMonteiro-Vitorello, Claudia B.Camargo, Luis E. A.Van Sluys, Marie A.Kitajima, João P.Truffi, DanielaDo Amaral, Alexandre M.Harakava, RicardoDe Oliveira, Julio C. F.Wood, DerekDe Oliveira, Mariana C.Miyaki, CristinaTakita, Marco A.Da Silva, Ana C. R.Furlan, Luis R. [UNESP]Carraro, Dirce M.Camarotte, GiovanaAlmeida Jr., Nalvo F.Carrer, HelaineCoutinho, Luiz L.El-Dorry, Hamza A.Ferro, Maria I. T. [UNESP]Gagliardi, Paulo R.Giglioti, EderGoldman, Maria H. S.Goldman, Gustavo H.Kimura, Edna T.Ferro, Emer S.Kuramae, Eiko E. [UNESP]Lemos, Eliana G. M. [UNESP]Lemos, Manoel V. F. [UNESP]Mauro, Sonia M. Z. [UNESP]Machado, Marcos A.Marino, Celso L. [UNESP]Menck, Carlos F.Nunes, Luiz R.Oliveira, Regina C.Pereira, Gonçalo G.Siqueira, WalterDe Souza, Alessandra A.Tsai, Siu M.Zanca, A. S.Simpson, Andrew J. G.Brumbley, Stevens M.Setúbal, João C.2014-05-27T11:21:07Z2014-05-27T11:21:07Z2004-08-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article827-836application/pdfhttp://dx.doi.org/10.1094/MPMI.2004.17.8.827Molecular Plant-Microbe Interactions, v. 17, n. 8, p. 827-836, 2004.0894-0282http://hdl.handle.net/11449/6781510.1094/MPMI.2004.17.8.827WOS:0002227312000012-s2.0-32426908782-s2.0-3242690878.pdf01653487382083190000-0003-4524-954XScopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengMolecular Plant-Microbe Interactions3.5881,935info:eu-repo/semantics/openAccess2024-06-07T15:32:35Zoai:repositorio.unesp.br:11449/67815Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T22:07:17.368425Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv The genome sequence of the gram-positive sugarcane pathogen Leifsonia xyli subsp. xyli
title The genome sequence of the gram-positive sugarcane pathogen Leifsonia xyli subsp. xyli
spellingShingle The genome sequence of the gram-positive sugarcane pathogen Leifsonia xyli subsp. xyli
Monteiro-Vitorello, Claudia B.
Actinomycetales
bacterial gene
bacterial genome
classification
DNA base composition
genetics
microbiology
molecular genetics
nucleotide sequence
pseudogene
sugarcane
Base Composition
Genes, Bacterial
Genome, Bacterial
Molecular Sequence Data
Pseudogenes
Saccharum
Actinobacteria (class)
Bacteria (microorganisms)
Leifsonia
Leifsonia xyli subsp. xyli
Posibacteria
Prokaryota
Saccharum hybrid cultivar
uncultured actinomycete
title_short The genome sequence of the gram-positive sugarcane pathogen Leifsonia xyli subsp. xyli
title_full The genome sequence of the gram-positive sugarcane pathogen Leifsonia xyli subsp. xyli
title_fullStr The genome sequence of the gram-positive sugarcane pathogen Leifsonia xyli subsp. xyli
title_full_unstemmed The genome sequence of the gram-positive sugarcane pathogen Leifsonia xyli subsp. xyli
title_sort The genome sequence of the gram-positive sugarcane pathogen Leifsonia xyli subsp. xyli
author Monteiro-Vitorello, Claudia B.
author_facet Monteiro-Vitorello, Claudia B.
Camargo, Luis E. A.
Van Sluys, Marie A.
Kitajima, João P.
Truffi, Daniela
Do Amaral, Alexandre M.
Harakava, Ricardo
De Oliveira, Julio C. F.
Wood, Derek
De Oliveira, Mariana C.
Miyaki, Cristina
Takita, Marco A.
Da Silva, Ana C. R.
Furlan, Luis R. [UNESP]
Carraro, Dirce M.
Camarotte, Giovana
Almeida Jr., Nalvo F.
Carrer, Helaine
Coutinho, Luiz L.
El-Dorry, Hamza A.
Ferro, Maria I. T. [UNESP]
Gagliardi, Paulo R.
Giglioti, Eder
Goldman, Maria H. S.
Goldman, Gustavo H.
Kimura, Edna T.
Ferro, Emer S.
Kuramae, Eiko E. [UNESP]
Lemos, Eliana G. M. [UNESP]
Lemos, Manoel V. F. [UNESP]
Mauro, Sonia M. Z. [UNESP]
Machado, Marcos A.
Marino, Celso L. [UNESP]
Menck, Carlos F.
Nunes, Luiz R.
Oliveira, Regina C.
Pereira, Gonçalo G.
Siqueira, Walter
De Souza, Alessandra A.
Tsai, Siu M.
Zanca, A. S.
Simpson, Andrew J. G.
Brumbley, Stevens M.
Setúbal, João C.
author_role author
author2 Camargo, Luis E. A.
Van Sluys, Marie A.
Kitajima, João P.
Truffi, Daniela
Do Amaral, Alexandre M.
Harakava, Ricardo
De Oliveira, Julio C. F.
Wood, Derek
De Oliveira, Mariana C.
Miyaki, Cristina
Takita, Marco A.
Da Silva, Ana C. R.
Furlan, Luis R. [UNESP]
Carraro, Dirce M.
Camarotte, Giovana
Almeida Jr., Nalvo F.
Carrer, Helaine
Coutinho, Luiz L.
El-Dorry, Hamza A.
Ferro, Maria I. T. [UNESP]
Gagliardi, Paulo R.
Giglioti, Eder
Goldman, Maria H. S.
Goldman, Gustavo H.
Kimura, Edna T.
Ferro, Emer S.
Kuramae, Eiko E. [UNESP]
Lemos, Eliana G. M. [UNESP]
Lemos, Manoel V. F. [UNESP]
Mauro, Sonia M. Z. [UNESP]
Machado, Marcos A.
Marino, Celso L. [UNESP]
Menck, Carlos F.
Nunes, Luiz R.
Oliveira, Regina C.
Pereira, Gonçalo G.
Siqueira, Walter
De Souza, Alessandra A.
Tsai, Siu M.
Zanca, A. S.
Simpson, Andrew J. G.
Brumbley, Stevens M.
Setúbal, João C.
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade de São Paulo (USP)
Alellyx Applied Genomics
Empresa Brasileira de Pesquisa Agropecuária (EMBRAPA)
Instituto Biológico
Universidade Estadual Paulista (Unesp)
HSB
Ctro. de Citricultura Sylvio Moreira
Inst. Ludwig Pesquisa Sobre O Cancer
Univ. Federal do Mato Grosso do Sul
Universidade Federal de São Carlos (UFSCar)
Universidade de Mogi Das Cruzes
Universidade Estadual de Campinas (UNICAMP)
Inst. Agronômico de Campinas
Ludwig Institute for Cancer Research
BSES Limited
University of Queensland
dc.contributor.author.fl_str_mv Monteiro-Vitorello, Claudia B.
Camargo, Luis E. A.
Van Sluys, Marie A.
Kitajima, João P.
Truffi, Daniela
Do Amaral, Alexandre M.
Harakava, Ricardo
De Oliveira, Julio C. F.
Wood, Derek
De Oliveira, Mariana C.
Miyaki, Cristina
Takita, Marco A.
Da Silva, Ana C. R.
Furlan, Luis R. [UNESP]
Carraro, Dirce M.
Camarotte, Giovana
Almeida Jr., Nalvo F.
Carrer, Helaine
Coutinho, Luiz L.
El-Dorry, Hamza A.
Ferro, Maria I. T. [UNESP]
Gagliardi, Paulo R.
Giglioti, Eder
Goldman, Maria H. S.
Goldman, Gustavo H.
Kimura, Edna T.
Ferro, Emer S.
Kuramae, Eiko E. [UNESP]
Lemos, Eliana G. M. [UNESP]
Lemos, Manoel V. F. [UNESP]
Mauro, Sonia M. Z. [UNESP]
Machado, Marcos A.
Marino, Celso L. [UNESP]
Menck, Carlos F.
Nunes, Luiz R.
Oliveira, Regina C.
Pereira, Gonçalo G.
Siqueira, Walter
De Souza, Alessandra A.
Tsai, Siu M.
Zanca, A. S.
Simpson, Andrew J. G.
Brumbley, Stevens M.
Setúbal, João C.
dc.subject.por.fl_str_mv Actinomycetales
bacterial gene
bacterial genome
classification
DNA base composition
genetics
microbiology
molecular genetics
nucleotide sequence
pseudogene
sugarcane
Base Composition
Genes, Bacterial
Genome, Bacterial
Molecular Sequence Data
Pseudogenes
Saccharum
Actinobacteria (class)
Bacteria (microorganisms)
Leifsonia
Leifsonia xyli subsp. xyli
Posibacteria
Prokaryota
Saccharum hybrid cultivar
uncultured actinomycete
topic Actinomycetales
bacterial gene
bacterial genome
classification
DNA base composition
genetics
microbiology
molecular genetics
nucleotide sequence
pseudogene
sugarcane
Base Composition
Genes, Bacterial
Genome, Bacterial
Molecular Sequence Data
Pseudogenes
Saccharum
Actinobacteria (class)
Bacteria (microorganisms)
Leifsonia
Leifsonia xyli subsp. xyli
Posibacteria
Prokaryota
Saccharum hybrid cultivar
uncultured actinomycete
description The genome sequence of Leifsonia xyli subsp. xyli, which causes ratoon stunting disease and affects sugarcane worldwide, was determined. The single circular chromosome of Leifsonia xyli subsp. xyli CTCB07 was 2.6 Mb in length with a GC content of 68% and 2,044 predicted open reading frames. The analysis also revealed 307 predicted pseudogenes, which is more than any bacterial plant pathogen sequenced to date. Many of these pseudogenes, if functional, would likely be involved in the degradation of plant heteropolysaccharides, uptake of free sugars, and synthesis of amino acids. Although L. xyli subsp. xyli has only been identified colonizing the xylem vessels of sugarcane, the numbers of predicted regulatory genes and sugar transporters are similar to those in free-living organisms. Some of the predicted pathogenicity genes appear to have been acquired by lateral transfer and include genes for cellulase, pectinase, wilt-inducing protein, lysozyme, and desaturase. The presence of the latter may contribute to stunting, since it is likely involved in the synthesis of abscisic acid, a hormone that arrests growth. Our findings are consistent with the nutritionally fastidious behavior exhibited by L. xyli subsp. xyli and suggest an ongoing adaptation to the restricted ecological niche it inhabits.
publishDate 2004
dc.date.none.fl_str_mv 2004-08-01
2014-05-27T11:21:07Z
2014-05-27T11:21:07Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1094/MPMI.2004.17.8.827
Molecular Plant-Microbe Interactions, v. 17, n. 8, p. 827-836, 2004.
0894-0282
http://hdl.handle.net/11449/67815
10.1094/MPMI.2004.17.8.827
WOS:000222731200001
2-s2.0-3242690878
2-s2.0-3242690878.pdf
0165348738208319
0000-0003-4524-954X
url http://dx.doi.org/10.1094/MPMI.2004.17.8.827
http://hdl.handle.net/11449/67815
identifier_str_mv Molecular Plant-Microbe Interactions, v. 17, n. 8, p. 827-836, 2004.
0894-0282
10.1094/MPMI.2004.17.8.827
WOS:000222731200001
2-s2.0-3242690878
2-s2.0-3242690878.pdf
0165348738208319
0000-0003-4524-954X
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Molecular Plant-Microbe Interactions
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1,935
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
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dc.format.none.fl_str_mv 827-836
application/pdf
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
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