Circulating lymphocytes and monocytes transcriptomic analysis of patients with type 2 diabetes mellitus, dyslipidemia and periodontitis

Detalhes bibliográficos
Autor(a) principal: Corbi, Sâmia C. T. [UNESP]
Data de Publicação: 2020
Outros Autores: de Vasconcellos, Jaira F., Bastos, Alliny S. [UNESP], Bussaneli, Diego Girotto [UNESP], da Silva, Bárbara Roque [UNESP], Santos, Raquel Alves, Takahashi, Catarina S., de S. Rocha, Cristiane, Carvalho, Benilton de Sá, Maurer-Morelli, Cláudia V., Orrico, Silvana R. P. [UNESP], Barros, Silvana P., Scarel-Caminaga, Raquel M. [UNESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1038/s41598-020-65042-9
http://hdl.handle.net/11449/200429
Resumo: Type 2 diabetes mellitus (T2DM), dyslipidemia and periodontitis are frequently associated pathologies; however, there are no studies showing the peripheral blood transcript profile of these combined diseases. Here we identified the differentially expressed genes (DEGs) of circulating lymphocytes and monocytes to reveal potential biomarkers that may be used as molecular targets for future diagnosis of each combination of these pathologies (compared to healthy patients) and give insights into the underlying molecular mechanisms of these diseases. Study participants (n = 150) were divided into groups: (H) systemically and periodontal healthy (control group); (P) with periodontitis, but systemically healthy; (DL-P) with dyslipidemia and periodontitis; (T2DMwell-DL-P) well-controlled type 2 diabetes mellitus with dyslipidemia and periodontitis; and (T2DMpoorly-DL-P) poorly-controlled type 2 diabetes mellitus with dyslipidemia and periodontitis. We preprocessed the microarray data using the Robust Multichip Average (RMA) strategy, followed by the RankProd method to identify candidates for DEGs. Furthermore, we performed functional enrichment analysis using Ingenuity Pathway Analysis and Gene Set Enrichment Analysis. DEGs were submitted to pairwise comparisons, and selected DEGs were validated by quantitative polymerase chain reaction. Validated DEGs verified from T2DMpoorly-DL-P versus H were: TGFB1I1, VNN1, HLADRB4 and CXCL8; T2DMwell-DL-P versus H: FN1, BPTF and PDE3B; DL-P versus H: DAB2, CD47 and HLADRB4; P versus H: IGHDL-P, ITGB2 and HLADRB4. In conclusion, we identified that circulating lymphocytes and monocytes of individuals simultaneously affected by T2DM, dyslipidemia and periodontitis, showed an altered molecular profile mainly associated to inflammatory response, immune cell trafficking, and infectious disease pathways. Altogether, these results shed light on novel potential targets for future diagnosis, monitoring or development of targeted therapies for patients sharing these conditions.
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spelling Circulating lymphocytes and monocytes transcriptomic analysis of patients with type 2 diabetes mellitus, dyslipidemia and periodontitisType 2 diabetes mellitus (T2DM), dyslipidemia and periodontitis are frequently associated pathologies; however, there are no studies showing the peripheral blood transcript profile of these combined diseases. Here we identified the differentially expressed genes (DEGs) of circulating lymphocytes and monocytes to reveal potential biomarkers that may be used as molecular targets for future diagnosis of each combination of these pathologies (compared to healthy patients) and give insights into the underlying molecular mechanisms of these diseases. Study participants (n = 150) were divided into groups: (H) systemically and periodontal healthy (control group); (P) with periodontitis, but systemically healthy; (DL-P) with dyslipidemia and periodontitis; (T2DMwell-DL-P) well-controlled type 2 diabetes mellitus with dyslipidemia and periodontitis; and (T2DMpoorly-DL-P) poorly-controlled type 2 diabetes mellitus with dyslipidemia and periodontitis. We preprocessed the microarray data using the Robust Multichip Average (RMA) strategy, followed by the RankProd method to identify candidates for DEGs. Furthermore, we performed functional enrichment analysis using Ingenuity Pathway Analysis and Gene Set Enrichment Analysis. DEGs were submitted to pairwise comparisons, and selected DEGs were validated by quantitative polymerase chain reaction. Validated DEGs verified from T2DMpoorly-DL-P versus H were: TGFB1I1, VNN1, HLADRB4 and CXCL8; T2DMwell-DL-P versus H: FN1, BPTF and PDE3B; DL-P versus H: DAB2, CD47 and HLADRB4; P versus H: IGHDL-P, ITGB2 and HLADRB4. In conclusion, we identified that circulating lymphocytes and monocytes of individuals simultaneously affected by T2DM, dyslipidemia and periodontitis, showed an altered molecular profile mainly associated to inflammatory response, immune cell trafficking, and infectious disease pathways. Altogether, these results shed light on novel potential targets for future diagnosis, monitoring or development of targeted therapies for patients sharing these conditions.Department of Diagnosis and Surgery School of Dentistry at Araraquara UNESP- São Paulo State UniversityDepartment of Morphology Genetics Orthodontics and Pediatric Dentistry School of Dentistry at Araraquara UNESP- São Paulo State UniversityMolecular Genomics and Therapeutics Section Genetics of Development and Disease Branch National Institute of Diabetes and Digestive and Kidney Diseases National Institutes of Health 10 Center Drive Building 10 Room 9D11Department of Surgery Uniformed Services University of the Health Sciences and Henry Jackson Foundation for the Advancement of Military MedicinePostgraduate Program in Sciences of the University of FrancaDepartment of Genetics Faculty of Medicine of Ribeirão Preto USP – University of São PauloDepartment of Biology Faculty of Philosophy Sciences and Letters of Ribeirão Preto USP –University of São PauloDepartment of Medical Genetics and Medicine Genomics University of Campinas – UNICAMPDepartment of Statistics Institute of Mathematics Statistics and Scientific Computing University of CampinasDepartment of Periodontology University of North Carolina at Chapel Hill – UNC School of DentistryAdvanced Research Center in Medicine Union of the Colleges of the Great Lakes (UNILAGO)Department of Diagnosis and Surgery School of Dentistry at Araraquara UNESP- São Paulo State UniversityDepartment of Morphology Genetics Orthodontics and Pediatric Dentistry School of Dentistry at Araraquara UNESP- São Paulo State UniversityUniversidade Estadual Paulista (Unesp)Room 9D11Uniformed Services University of the Health Sciences and Henry Jackson Foundation for the Advancement of Military MedicinePostgraduate Program in Sciences of the University of FrancaUniversidade de São Paulo (USP)Universidade Estadual de Campinas (UNICAMP)School of DentistryUnion of the Colleges of the Great Lakes (UNILAGO)Corbi, Sâmia C. T. [UNESP]de Vasconcellos, Jaira F.Bastos, Alliny S. [UNESP]Bussaneli, Diego Girotto [UNESP]da Silva, Bárbara Roque [UNESP]Santos, Raquel AlvesTakahashi, Catarina S.de S. Rocha, CristianeCarvalho, Benilton de SáMaurer-Morelli, Cláudia V.Orrico, Silvana R. P. [UNESP]Barros, Silvana P.Scarel-Caminaga, Raquel M. [UNESP]2020-12-12T02:06:26Z2020-12-12T02:06:26Z2020-12-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://dx.doi.org/10.1038/s41598-020-65042-9Scientific Reports, v. 10, n. 1, 2020.2045-2322http://hdl.handle.net/11449/20042910.1038/s41598-020-65042-92-s2.0-85084874483Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengScientific Reportsinfo:eu-repo/semantics/openAccess2024-09-26T15:21:09Zoai:repositorio.unesp.br:11449/200429Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestrepositoriounesp@unesp.bropendoar:29462024-09-26T15:21:09Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv Circulating lymphocytes and monocytes transcriptomic analysis of patients with type 2 diabetes mellitus, dyslipidemia and periodontitis
title Circulating lymphocytes and monocytes transcriptomic analysis of patients with type 2 diabetes mellitus, dyslipidemia and periodontitis
spellingShingle Circulating lymphocytes and monocytes transcriptomic analysis of patients with type 2 diabetes mellitus, dyslipidemia and periodontitis
Corbi, Sâmia C. T. [UNESP]
title_short Circulating lymphocytes and monocytes transcriptomic analysis of patients with type 2 diabetes mellitus, dyslipidemia and periodontitis
title_full Circulating lymphocytes and monocytes transcriptomic analysis of patients with type 2 diabetes mellitus, dyslipidemia and periodontitis
title_fullStr Circulating lymphocytes and monocytes transcriptomic analysis of patients with type 2 diabetes mellitus, dyslipidemia and periodontitis
title_full_unstemmed Circulating lymphocytes and monocytes transcriptomic analysis of patients with type 2 diabetes mellitus, dyslipidemia and periodontitis
title_sort Circulating lymphocytes and monocytes transcriptomic analysis of patients with type 2 diabetes mellitus, dyslipidemia and periodontitis
author Corbi, Sâmia C. T. [UNESP]
author_facet Corbi, Sâmia C. T. [UNESP]
de Vasconcellos, Jaira F.
Bastos, Alliny S. [UNESP]
Bussaneli, Diego Girotto [UNESP]
da Silva, Bárbara Roque [UNESP]
Santos, Raquel Alves
Takahashi, Catarina S.
de S. Rocha, Cristiane
Carvalho, Benilton de Sá
Maurer-Morelli, Cláudia V.
Orrico, Silvana R. P. [UNESP]
Barros, Silvana P.
Scarel-Caminaga, Raquel M. [UNESP]
author_role author
author2 de Vasconcellos, Jaira F.
Bastos, Alliny S. [UNESP]
Bussaneli, Diego Girotto [UNESP]
da Silva, Bárbara Roque [UNESP]
Santos, Raquel Alves
Takahashi, Catarina S.
de S. Rocha, Cristiane
Carvalho, Benilton de Sá
Maurer-Morelli, Cláudia V.
Orrico, Silvana R. P. [UNESP]
Barros, Silvana P.
Scarel-Caminaga, Raquel M. [UNESP]
author2_role author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (Unesp)
Room 9D11
Uniformed Services University of the Health Sciences and Henry Jackson Foundation for the Advancement of Military Medicine
Postgraduate Program in Sciences of the University of Franca
Universidade de São Paulo (USP)
Universidade Estadual de Campinas (UNICAMP)
School of Dentistry
Union of the Colleges of the Great Lakes (UNILAGO)
dc.contributor.author.fl_str_mv Corbi, Sâmia C. T. [UNESP]
de Vasconcellos, Jaira F.
Bastos, Alliny S. [UNESP]
Bussaneli, Diego Girotto [UNESP]
da Silva, Bárbara Roque [UNESP]
Santos, Raquel Alves
Takahashi, Catarina S.
de S. Rocha, Cristiane
Carvalho, Benilton de Sá
Maurer-Morelli, Cláudia V.
Orrico, Silvana R. P. [UNESP]
Barros, Silvana P.
Scarel-Caminaga, Raquel M. [UNESP]
description Type 2 diabetes mellitus (T2DM), dyslipidemia and periodontitis are frequently associated pathologies; however, there are no studies showing the peripheral blood transcript profile of these combined diseases. Here we identified the differentially expressed genes (DEGs) of circulating lymphocytes and monocytes to reveal potential biomarkers that may be used as molecular targets for future diagnosis of each combination of these pathologies (compared to healthy patients) and give insights into the underlying molecular mechanisms of these diseases. Study participants (n = 150) were divided into groups: (H) systemically and periodontal healthy (control group); (P) with periodontitis, but systemically healthy; (DL-P) with dyslipidemia and periodontitis; (T2DMwell-DL-P) well-controlled type 2 diabetes mellitus with dyslipidemia and periodontitis; and (T2DMpoorly-DL-P) poorly-controlled type 2 diabetes mellitus with dyslipidemia and periodontitis. We preprocessed the microarray data using the Robust Multichip Average (RMA) strategy, followed by the RankProd method to identify candidates for DEGs. Furthermore, we performed functional enrichment analysis using Ingenuity Pathway Analysis and Gene Set Enrichment Analysis. DEGs were submitted to pairwise comparisons, and selected DEGs were validated by quantitative polymerase chain reaction. Validated DEGs verified from T2DMpoorly-DL-P versus H were: TGFB1I1, VNN1, HLADRB4 and CXCL8; T2DMwell-DL-P versus H: FN1, BPTF and PDE3B; DL-P versus H: DAB2, CD47 and HLADRB4; P versus H: IGHDL-P, ITGB2 and HLADRB4. In conclusion, we identified that circulating lymphocytes and monocytes of individuals simultaneously affected by T2DM, dyslipidemia and periodontitis, showed an altered molecular profile mainly associated to inflammatory response, immune cell trafficking, and infectious disease pathways. Altogether, these results shed light on novel potential targets for future diagnosis, monitoring or development of targeted therapies for patients sharing these conditions.
publishDate 2020
dc.date.none.fl_str_mv 2020-12-12T02:06:26Z
2020-12-12T02:06:26Z
2020-12-01
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1038/s41598-020-65042-9
Scientific Reports, v. 10, n. 1, 2020.
2045-2322
http://hdl.handle.net/11449/200429
10.1038/s41598-020-65042-9
2-s2.0-85084874483
url http://dx.doi.org/10.1038/s41598-020-65042-9
http://hdl.handle.net/11449/200429
identifier_str_mv Scientific Reports, v. 10, n. 1, 2020.
2045-2322
10.1038/s41598-020-65042-9
2-s2.0-85084874483
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Scientific Reports
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv repositoriounesp@unesp.br
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