DNA barcoding techniques used to identify the shared ichthyofauna between the Pantanal floodplain and Upper Parana River
Autor(a) principal: | |
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Data de Publicação: | 2018 |
Outros Autores: | , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.1080/24701394.2017.1404046 http://hdl.handle.net/11449/179536 |
Resumo: | The biological invasion process is widely debated topic, as the population depletion of some species and the extinction of others are related to this process. To accelerate the identification of species and to detect non-native forms, new tools are being developed, such as those based on genetic markers. This study aimed to use Barcode DNA methodology to identify fish species that had translocated between the Parana and Paraguay River Basins. Based on a database of two studies that were conducted in these regions, 289 sequences of Cytochrome Oxidase C subunit 1 (COI) were used for General Mixed Youle Coalecent (GMYC) analysis, including 29 morphospecies that were sampled in both river basins. As a result, we observed that while some morphospecies have low variation, demonstrating a recent occupation of the basins, other morphospecies probably represent species complexes. A third of the morphospecies had well-defined lineages but not enough to be treated as different Molecular Operational Taxonomic Units (MOTUs). These results demonstrate that human interventions possibly participated in the distribution of some lineages. However, biogeographical historical processes are also important for the morphospecies distribution. The data suggest that the number of species that are present in these two basins is underestimated and that human actions can irreversibly affect the natural history of the species in these regions. |
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DNA barcoding techniques used to identify the shared ichthyofauna between the Pantanal floodplain and Upper Parana Rivercytochrome oxidase 1DNA barcodingneotropical speciesPantanalUpper Parana RiverThe biological invasion process is widely debated topic, as the population depletion of some species and the extinction of others are related to this process. To accelerate the identification of species and to detect non-native forms, new tools are being developed, such as those based on genetic markers. This study aimed to use Barcode DNA methodology to identify fish species that had translocated between the Parana and Paraguay River Basins. Based on a database of two studies that were conducted in these regions, 289 sequences of Cytochrome Oxidase C subunit 1 (COI) were used for General Mixed Youle Coalecent (GMYC) analysis, including 29 morphospecies that were sampled in both river basins. As a result, we observed that while some morphospecies have low variation, demonstrating a recent occupation of the basins, other morphospecies probably represent species complexes. A third of the morphospecies had well-defined lineages but not enough to be treated as different Molecular Operational Taxonomic Units (MOTUs). These results demonstrate that human interventions possibly participated in the distribution of some lineages. However, biogeographical historical processes are also important for the morphospecies distribution. The data suggest that the number of species that are present in these two basins is underestimated and that human actions can irreversibly affect the natural history of the species in these regions.Departamento de Morfologia Instituto de Biociências Universidade Estadual Paulista (UNESP)Instituto de Ciências da Vida e da Natureza Universidade Federal da Integração Latino-Americana (UNILA)Departamento de Morfologia Instituto de Biociências Universidade Estadual Paulista (UNESP)Universidade Estadual Paulista (Unesp)Universidade Federal da Integração Latino-Americana (UNILA)da Costa-Silva, Guilherme J. [UNESP]Yuldi Ashikaga, Fernando [UNESP]Kioko Shimabukuro Dias, Cristiane [UNESP]Garcia Pereira, Luiz HenriqueForesti, Fausto [UNESP]Oliveira, Claudio [UNESP]2018-12-11T17:35:34Z2018-12-11T17:35:34Z2018-10-03info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article1063-1072application/pdfhttp://dx.doi.org/10.1080/24701394.2017.1404046Mitochondrial DNA Part A: DNA Mapping, Sequencing, and Analysis, v. 29, n. 7, p. 1063-1072, 2018.2470-14082470-1394http://hdl.handle.net/11449/17953610.1080/24701394.2017.14040462-s2.0-850411215332-s2.0-85041121533.pdfScopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengMitochondrial DNA Part A: DNA Mapping, Sequencing, and Analysis0,1500,150info:eu-repo/semantics/openAccess2023-11-17T06:11:38Zoai:repositorio.unesp.br:11449/179536Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T17:56:24.437579Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
DNA barcoding techniques used to identify the shared ichthyofauna between the Pantanal floodplain and Upper Parana River |
title |
DNA barcoding techniques used to identify the shared ichthyofauna between the Pantanal floodplain and Upper Parana River |
spellingShingle |
DNA barcoding techniques used to identify the shared ichthyofauna between the Pantanal floodplain and Upper Parana River da Costa-Silva, Guilherme J. [UNESP] cytochrome oxidase 1 DNA barcoding neotropical species Pantanal Upper Parana River |
title_short |
DNA barcoding techniques used to identify the shared ichthyofauna between the Pantanal floodplain and Upper Parana River |
title_full |
DNA barcoding techniques used to identify the shared ichthyofauna between the Pantanal floodplain and Upper Parana River |
title_fullStr |
DNA barcoding techniques used to identify the shared ichthyofauna between the Pantanal floodplain and Upper Parana River |
title_full_unstemmed |
DNA barcoding techniques used to identify the shared ichthyofauna between the Pantanal floodplain and Upper Parana River |
title_sort |
DNA barcoding techniques used to identify the shared ichthyofauna between the Pantanal floodplain and Upper Parana River |
author |
da Costa-Silva, Guilherme J. [UNESP] |
author_facet |
da Costa-Silva, Guilherme J. [UNESP] Yuldi Ashikaga, Fernando [UNESP] Kioko Shimabukuro Dias, Cristiane [UNESP] Garcia Pereira, Luiz Henrique Foresti, Fausto [UNESP] Oliveira, Claudio [UNESP] |
author_role |
author |
author2 |
Yuldi Ashikaga, Fernando [UNESP] Kioko Shimabukuro Dias, Cristiane [UNESP] Garcia Pereira, Luiz Henrique Foresti, Fausto [UNESP] Oliveira, Claudio [UNESP] |
author2_role |
author author author author author |
dc.contributor.none.fl_str_mv |
Universidade Estadual Paulista (Unesp) Universidade Federal da Integração Latino-Americana (UNILA) |
dc.contributor.author.fl_str_mv |
da Costa-Silva, Guilherme J. [UNESP] Yuldi Ashikaga, Fernando [UNESP] Kioko Shimabukuro Dias, Cristiane [UNESP] Garcia Pereira, Luiz Henrique Foresti, Fausto [UNESP] Oliveira, Claudio [UNESP] |
dc.subject.por.fl_str_mv |
cytochrome oxidase 1 DNA barcoding neotropical species Pantanal Upper Parana River |
topic |
cytochrome oxidase 1 DNA barcoding neotropical species Pantanal Upper Parana River |
description |
The biological invasion process is widely debated topic, as the population depletion of some species and the extinction of others are related to this process. To accelerate the identification of species and to detect non-native forms, new tools are being developed, such as those based on genetic markers. This study aimed to use Barcode DNA methodology to identify fish species that had translocated between the Parana and Paraguay River Basins. Based on a database of two studies that were conducted in these regions, 289 sequences of Cytochrome Oxidase C subunit 1 (COI) were used for General Mixed Youle Coalecent (GMYC) analysis, including 29 morphospecies that were sampled in both river basins. As a result, we observed that while some morphospecies have low variation, demonstrating a recent occupation of the basins, other morphospecies probably represent species complexes. A third of the morphospecies had well-defined lineages but not enough to be treated as different Molecular Operational Taxonomic Units (MOTUs). These results demonstrate that human interventions possibly participated in the distribution of some lineages. However, biogeographical historical processes are also important for the morphospecies distribution. The data suggest that the number of species that are present in these two basins is underestimated and that human actions can irreversibly affect the natural history of the species in these regions. |
publishDate |
2018 |
dc.date.none.fl_str_mv |
2018-12-11T17:35:34Z 2018-12-11T17:35:34Z 2018-10-03 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.1080/24701394.2017.1404046 Mitochondrial DNA Part A: DNA Mapping, Sequencing, and Analysis, v. 29, n. 7, p. 1063-1072, 2018. 2470-1408 2470-1394 http://hdl.handle.net/11449/179536 10.1080/24701394.2017.1404046 2-s2.0-85041121533 2-s2.0-85041121533.pdf |
url |
http://dx.doi.org/10.1080/24701394.2017.1404046 http://hdl.handle.net/11449/179536 |
identifier_str_mv |
Mitochondrial DNA Part A: DNA Mapping, Sequencing, and Analysis, v. 29, n. 7, p. 1063-1072, 2018. 2470-1408 2470-1394 10.1080/24701394.2017.1404046 2-s2.0-85041121533 2-s2.0-85041121533.pdf |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Mitochondrial DNA Part A: DNA Mapping, Sequencing, and Analysis 0,150 0,150 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
1063-1072 application/pdf |
dc.source.none.fl_str_mv |
Scopus reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
|
_version_ |
1808128877717880832 |