DNA barcoding techniques used to identify the shared ichthyofauna between the Pantanal floodplain and Upper Parana River

Detalhes bibliográficos
Autor(a) principal: da Costa-Silva, Guilherme J. [UNESP]
Data de Publicação: 2018
Outros Autores: Yuldi Ashikaga, Fernando [UNESP], Kioko Shimabukuro Dias, Cristiane [UNESP], Garcia Pereira, Luiz Henrique, Foresti, Fausto [UNESP], Oliveira, Claudio [UNESP]
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1080/24701394.2017.1404046
http://hdl.handle.net/11449/179536
Resumo: The biological invasion process is widely debated topic, as the population depletion of some species and the extinction of others are related to this process. To accelerate the identification of species and to detect non-native forms, new tools are being developed, such as those based on genetic markers. This study aimed to use Barcode DNA methodology to identify fish species that had translocated between the Parana and Paraguay River Basins. Based on a database of two studies that were conducted in these regions, 289 sequences of Cytochrome Oxidase C subunit 1 (COI) were used for General Mixed Youle Coalecent (GMYC) analysis, including 29 morphospecies that were sampled in both river basins. As a result, we observed that while some morphospecies have low variation, demonstrating a recent occupation of the basins, other morphospecies probably represent species complexes. A third of the morphospecies had well-defined lineages but not enough to be treated as different Molecular Operational Taxonomic Units (MOTUs). These results demonstrate that human interventions possibly participated in the distribution of some lineages. However, biogeographical historical processes are also important for the morphospecies distribution. The data suggest that the number of species that are present in these two basins is underestimated and that human actions can irreversibly affect the natural history of the species in these regions.
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spelling DNA barcoding techniques used to identify the shared ichthyofauna between the Pantanal floodplain and Upper Parana Rivercytochrome oxidase 1DNA barcodingneotropical speciesPantanalUpper Parana RiverThe biological invasion process is widely debated topic, as the population depletion of some species and the extinction of others are related to this process. To accelerate the identification of species and to detect non-native forms, new tools are being developed, such as those based on genetic markers. This study aimed to use Barcode DNA methodology to identify fish species that had translocated between the Parana and Paraguay River Basins. Based on a database of two studies that were conducted in these regions, 289 sequences of Cytochrome Oxidase C subunit 1 (COI) were used for General Mixed Youle Coalecent (GMYC) analysis, including 29 morphospecies that were sampled in both river basins. As a result, we observed that while some morphospecies have low variation, demonstrating a recent occupation of the basins, other morphospecies probably represent species complexes. A third of the morphospecies had well-defined lineages but not enough to be treated as different Molecular Operational Taxonomic Units (MOTUs). These results demonstrate that human interventions possibly participated in the distribution of some lineages. However, biogeographical historical processes are also important for the morphospecies distribution. The data suggest that the number of species that are present in these two basins is underestimated and that human actions can irreversibly affect the natural history of the species in these regions.Departamento de Morfologia Instituto de Biociências Universidade Estadual Paulista (UNESP)Instituto de Ciências da Vida e da Natureza Universidade Federal da Integração Latino-Americana (UNILA)Departamento de Morfologia Instituto de Biociências Universidade Estadual Paulista (UNESP)Universidade Estadual Paulista (Unesp)Universidade Federal da Integração Latino-Americana (UNILA)da Costa-Silva, Guilherme J. [UNESP]Yuldi Ashikaga, Fernando [UNESP]Kioko Shimabukuro Dias, Cristiane [UNESP]Garcia Pereira, Luiz HenriqueForesti, Fausto [UNESP]Oliveira, Claudio [UNESP]2018-12-11T17:35:34Z2018-12-11T17:35:34Z2018-10-03info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article1063-1072application/pdfhttp://dx.doi.org/10.1080/24701394.2017.1404046Mitochondrial DNA Part A: DNA Mapping, Sequencing, and Analysis, v. 29, n. 7, p. 1063-1072, 2018.2470-14082470-1394http://hdl.handle.net/11449/17953610.1080/24701394.2017.14040462-s2.0-850411215332-s2.0-85041121533.pdfScopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengMitochondrial DNA Part A: DNA Mapping, Sequencing, and Analysis0,1500,150info:eu-repo/semantics/openAccess2023-11-17T06:11:38Zoai:repositorio.unesp.br:11449/179536Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T17:56:24.437579Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv DNA barcoding techniques used to identify the shared ichthyofauna between the Pantanal floodplain and Upper Parana River
title DNA barcoding techniques used to identify the shared ichthyofauna between the Pantanal floodplain and Upper Parana River
spellingShingle DNA barcoding techniques used to identify the shared ichthyofauna between the Pantanal floodplain and Upper Parana River
da Costa-Silva, Guilherme J. [UNESP]
cytochrome oxidase 1
DNA barcoding
neotropical species
Pantanal
Upper Parana River
title_short DNA barcoding techniques used to identify the shared ichthyofauna between the Pantanal floodplain and Upper Parana River
title_full DNA barcoding techniques used to identify the shared ichthyofauna between the Pantanal floodplain and Upper Parana River
title_fullStr DNA barcoding techniques used to identify the shared ichthyofauna between the Pantanal floodplain and Upper Parana River
title_full_unstemmed DNA barcoding techniques used to identify the shared ichthyofauna between the Pantanal floodplain and Upper Parana River
title_sort DNA barcoding techniques used to identify the shared ichthyofauna between the Pantanal floodplain and Upper Parana River
author da Costa-Silva, Guilherme J. [UNESP]
author_facet da Costa-Silva, Guilherme J. [UNESP]
Yuldi Ashikaga, Fernando [UNESP]
Kioko Shimabukuro Dias, Cristiane [UNESP]
Garcia Pereira, Luiz Henrique
Foresti, Fausto [UNESP]
Oliveira, Claudio [UNESP]
author_role author
author2 Yuldi Ashikaga, Fernando [UNESP]
Kioko Shimabukuro Dias, Cristiane [UNESP]
Garcia Pereira, Luiz Henrique
Foresti, Fausto [UNESP]
Oliveira, Claudio [UNESP]
author2_role author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade Estadual Paulista (Unesp)
Universidade Federal da Integração Latino-Americana (UNILA)
dc.contributor.author.fl_str_mv da Costa-Silva, Guilherme J. [UNESP]
Yuldi Ashikaga, Fernando [UNESP]
Kioko Shimabukuro Dias, Cristiane [UNESP]
Garcia Pereira, Luiz Henrique
Foresti, Fausto [UNESP]
Oliveira, Claudio [UNESP]
dc.subject.por.fl_str_mv cytochrome oxidase 1
DNA barcoding
neotropical species
Pantanal
Upper Parana River
topic cytochrome oxidase 1
DNA barcoding
neotropical species
Pantanal
Upper Parana River
description The biological invasion process is widely debated topic, as the population depletion of some species and the extinction of others are related to this process. To accelerate the identification of species and to detect non-native forms, new tools are being developed, such as those based on genetic markers. This study aimed to use Barcode DNA methodology to identify fish species that had translocated between the Parana and Paraguay River Basins. Based on a database of two studies that were conducted in these regions, 289 sequences of Cytochrome Oxidase C subunit 1 (COI) were used for General Mixed Youle Coalecent (GMYC) analysis, including 29 morphospecies that were sampled in both river basins. As a result, we observed that while some morphospecies have low variation, demonstrating a recent occupation of the basins, other morphospecies probably represent species complexes. A third of the morphospecies had well-defined lineages but not enough to be treated as different Molecular Operational Taxonomic Units (MOTUs). These results demonstrate that human interventions possibly participated in the distribution of some lineages. However, biogeographical historical processes are also important for the morphospecies distribution. The data suggest that the number of species that are present in these two basins is underestimated and that human actions can irreversibly affect the natural history of the species in these regions.
publishDate 2018
dc.date.none.fl_str_mv 2018-12-11T17:35:34Z
2018-12-11T17:35:34Z
2018-10-03
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1080/24701394.2017.1404046
Mitochondrial DNA Part A: DNA Mapping, Sequencing, and Analysis, v. 29, n. 7, p. 1063-1072, 2018.
2470-1408
2470-1394
http://hdl.handle.net/11449/179536
10.1080/24701394.2017.1404046
2-s2.0-85041121533
2-s2.0-85041121533.pdf
url http://dx.doi.org/10.1080/24701394.2017.1404046
http://hdl.handle.net/11449/179536
identifier_str_mv Mitochondrial DNA Part A: DNA Mapping, Sequencing, and Analysis, v. 29, n. 7, p. 1063-1072, 2018.
2470-1408
2470-1394
10.1080/24701394.2017.1404046
2-s2.0-85041121533
2-s2.0-85041121533.pdf
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Mitochondrial DNA Part A: DNA Mapping, Sequencing, and Analysis
0,150
0,150
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 1063-1072
application/pdf
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
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