A novel mechanism of β-glucosidase stimulation through a monosaccharide binding-induced conformational change

Detalhes bibliográficos
Autor(a) principal: Corrêa, Thamy L.R.
Data de Publicação: 2021
Outros Autores: Franco Cairo, João Paulo L., Cota, Junio, Damasio, André, Oliveira, Leandro C. [UNESP], Squina, Fabio M.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.1016/j.ijbiomac.2020.11.001
http://hdl.handle.net/11449/205522
Resumo: It is urgent the transition from a fossil fuel-based economy to a sustainable bioeconomy based on bioconversion technologies using renewable plant biomass feedstocks to produce high chemicals, bioplastics, and biofuels. β-Glucosidases are key enzymes responsible for degrading the plant cell wall polymers, as they cleave glucan-based oligo- and polysaccharides to generate glucose. Monosaccharide-tolerant or -stimulated β-glucosidases have been reported in the past decade. Here, we describe a novel mechanism of β-glucosidase stimulation by glucose and xylose. The glycoside hydrolase 1 family β-glucosidase from Thermotoga petrophila (TpBgl1) displays a typical glucose stimulation mechanism based on an increased Vmax and decreased Km in response to glucose. Through molecular docking and dynamics analyses, we mapped putative monosaccharide binding regions (BRs) on the surface of TpBgl1. Our results indicate that after interaction with glucose or xylose at BR1 site, an adjacent loop region assumes an extended conformation, which increases the entrance to the TpBgl1 active site, improving product formation. Biochemical assays with TpBgl1 BR1 mutants, TpBgl1D49A/Y410A and TpBgl1D49K/Y410H, resulted in decreasing and abolishing monosaccharide stimulation, respectively. These mutations also impaired the BR1 looping extension responsible for monosaccharide stimulation. This study provides a molecular basis for the rational design of β-glucosidases for biotechnological applications.
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spelling A novel mechanism of β-glucosidase stimulation through a monosaccharide binding-induced conformational changeBioeconomyGH1Molecular dynamics simulationThermotoga petrophilaβ-GlucosidasesIt is urgent the transition from a fossil fuel-based economy to a sustainable bioeconomy based on bioconversion technologies using renewable plant biomass feedstocks to produce high chemicals, bioplastics, and biofuels. β-Glucosidases are key enzymes responsible for degrading the plant cell wall polymers, as they cleave glucan-based oligo- and polysaccharides to generate glucose. Monosaccharide-tolerant or -stimulated β-glucosidases have been reported in the past decade. Here, we describe a novel mechanism of β-glucosidase stimulation by glucose and xylose. The glycoside hydrolase 1 family β-glucosidase from Thermotoga petrophila (TpBgl1) displays a typical glucose stimulation mechanism based on an increased Vmax and decreased Km in response to glucose. Through molecular docking and dynamics analyses, we mapped putative monosaccharide binding regions (BRs) on the surface of TpBgl1. Our results indicate that after interaction with glucose or xylose at BR1 site, an adjacent loop region assumes an extended conformation, which increases the entrance to the TpBgl1 active site, improving product formation. Biochemical assays with TpBgl1 BR1 mutants, TpBgl1D49A/Y410A and TpBgl1D49K/Y410H, resulted in decreasing and abolishing monosaccharide stimulation, respectively. These mutations also impaired the BR1 looping extension responsible for monosaccharide stimulation. This study provides a molecular basis for the rational design of β-glucosidases for biotechnological applications.Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Fundação para o Desenvolvimento da UNESP (FUNDUNESP)Brazilian Biorenewables National Laboratory (LNBR) Brazilian Center for Research in Energy and Materials (CNPEM)Department of Biochemistry and Tissue Biology Institute of Biology (IB) University of Campinas (UNICAMP)Instituto de Ciências Agrárias (ICA) Universidade Federal de Minas Gerais (UFMG)São Paulo State University (Unesp) Department of Physics Institute of Biosciences Humanities and Exact SciencesPrograma de Processos Tecnológicos e Ambientais Universidade de Sorocaba (UNISO)São Paulo State University (Unesp) Department of Physics Institute of Biosciences Humanities and Exact SciencesCNPq: 150664/2013-3FAPESP: 2010/18198-3FAPESP: 2011/13242-7FAPESP: 2012/20549-4FAPESP: 2015/50590-4FAPESP: 2016/09950-0FUNDUNESP: 2532/002/14-PROPe/CDCCNPq: 304816/2017-5CNPq: 305748/2017-3CNPq: 428527/2018-3CNPq: 442352/2014-0Brazilian Center for Research in Energy and Materials (CNPEM)Universidade Estadual de Campinas (UNICAMP)Universidade Federal de Minas Gerais (UFMG)Universidade Estadual Paulista (Unesp)Universidade de Sorocaba (UNISO)Corrêa, Thamy L.R.Franco Cairo, João Paulo L.Cota, JunioDamasio, AndréOliveira, Leandro C. [UNESP]Squina, Fabio M.2021-06-25T10:16:48Z2021-06-25T10:16:48Z2021-01-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article1188-1196http://dx.doi.org/10.1016/j.ijbiomac.2020.11.001International Journal of Biological Macromolecules, v. 166, p. 1188-1196.1879-00030141-8130http://hdl.handle.net/11449/20552210.1016/j.ijbiomac.2020.11.0012-s2.0-85096617436Scopusreponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengInternational Journal of Biological Macromoleculesinfo:eu-repo/semantics/openAccess2021-10-23T14:48:14Zoai:repositorio.unesp.br:11449/205522Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462021-10-23T14:48:14Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv A novel mechanism of β-glucosidase stimulation through a monosaccharide binding-induced conformational change
title A novel mechanism of β-glucosidase stimulation through a monosaccharide binding-induced conformational change
spellingShingle A novel mechanism of β-glucosidase stimulation through a monosaccharide binding-induced conformational change
Corrêa, Thamy L.R.
Bioeconomy
GH1
Molecular dynamics simulation
Thermotoga petrophila
β-Glucosidases
title_short A novel mechanism of β-glucosidase stimulation through a monosaccharide binding-induced conformational change
title_full A novel mechanism of β-glucosidase stimulation through a monosaccharide binding-induced conformational change
title_fullStr A novel mechanism of β-glucosidase stimulation through a monosaccharide binding-induced conformational change
title_full_unstemmed A novel mechanism of β-glucosidase stimulation through a monosaccharide binding-induced conformational change
title_sort A novel mechanism of β-glucosidase stimulation through a monosaccharide binding-induced conformational change
author Corrêa, Thamy L.R.
author_facet Corrêa, Thamy L.R.
Franco Cairo, João Paulo L.
Cota, Junio
Damasio, André
Oliveira, Leandro C. [UNESP]
Squina, Fabio M.
author_role author
author2 Franco Cairo, João Paulo L.
Cota, Junio
Damasio, André
Oliveira, Leandro C. [UNESP]
Squina, Fabio M.
author2_role author
author
author
author
author
dc.contributor.none.fl_str_mv Brazilian Center for Research in Energy and Materials (CNPEM)
Universidade Estadual de Campinas (UNICAMP)
Universidade Federal de Minas Gerais (UFMG)
Universidade Estadual Paulista (Unesp)
Universidade de Sorocaba (UNISO)
dc.contributor.author.fl_str_mv Corrêa, Thamy L.R.
Franco Cairo, João Paulo L.
Cota, Junio
Damasio, André
Oliveira, Leandro C. [UNESP]
Squina, Fabio M.
dc.subject.por.fl_str_mv Bioeconomy
GH1
Molecular dynamics simulation
Thermotoga petrophila
β-Glucosidases
topic Bioeconomy
GH1
Molecular dynamics simulation
Thermotoga petrophila
β-Glucosidases
description It is urgent the transition from a fossil fuel-based economy to a sustainable bioeconomy based on bioconversion technologies using renewable plant biomass feedstocks to produce high chemicals, bioplastics, and biofuels. β-Glucosidases are key enzymes responsible for degrading the plant cell wall polymers, as they cleave glucan-based oligo- and polysaccharides to generate glucose. Monosaccharide-tolerant or -stimulated β-glucosidases have been reported in the past decade. Here, we describe a novel mechanism of β-glucosidase stimulation by glucose and xylose. The glycoside hydrolase 1 family β-glucosidase from Thermotoga petrophila (TpBgl1) displays a typical glucose stimulation mechanism based on an increased Vmax and decreased Km in response to glucose. Through molecular docking and dynamics analyses, we mapped putative monosaccharide binding regions (BRs) on the surface of TpBgl1. Our results indicate that after interaction with glucose or xylose at BR1 site, an adjacent loop region assumes an extended conformation, which increases the entrance to the TpBgl1 active site, improving product formation. Biochemical assays with TpBgl1 BR1 mutants, TpBgl1D49A/Y410A and TpBgl1D49K/Y410H, resulted in decreasing and abolishing monosaccharide stimulation, respectively. These mutations also impaired the BR1 looping extension responsible for monosaccharide stimulation. This study provides a molecular basis for the rational design of β-glucosidases for biotechnological applications.
publishDate 2021
dc.date.none.fl_str_mv 2021-06-25T10:16:48Z
2021-06-25T10:16:48Z
2021-01-01
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.1016/j.ijbiomac.2020.11.001
International Journal of Biological Macromolecules, v. 166, p. 1188-1196.
1879-0003
0141-8130
http://hdl.handle.net/11449/205522
10.1016/j.ijbiomac.2020.11.001
2-s2.0-85096617436
url http://dx.doi.org/10.1016/j.ijbiomac.2020.11.001
http://hdl.handle.net/11449/205522
identifier_str_mv International Journal of Biological Macromolecules, v. 166, p. 1188-1196.
1879-0003
0141-8130
10.1016/j.ijbiomac.2020.11.001
2-s2.0-85096617436
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv International Journal of Biological Macromolecules
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 1188-1196
dc.source.none.fl_str_mv Scopus
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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