A Flow Cytometry Protocol to Estimate DNA Content in the Yellowtail Tetra Astyanax altiparanae

Detalhes bibliográficos
Autor(a) principal: Xavier, Pedro L. P.
Data de Publicação: 2017
Outros Autores: Senhorini, Jose A., Pereira-Santos, Matheus [UNESP], Fujimoto, Takafumi, Shimoda, Eduardo, Silva, Luciano A., Santos, Silvio A. dos, Yasui, George S.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da UNESP
Texto Completo: http://dx.doi.org/10.3389/fgene.2017.00131
http://hdl.handle.net/11449/163339
Resumo: The production of triploid yellowtail tetra Astyanax altiparanae is a key factor to obtain permanently sterile individuals by chromosome set manipulation. Flow cytometric analysis is the main tool for confirmation of the resultant triploids individuals, but very few protocols are specific for A. altiparanae species. The current study has developed a protocol to estimate DNA content in this species. Furthermore, a protocol for long-term storage of dorsal fins used for flow cytometry analysis was established. The combination of five solutions with three detergents (Nonidet P-40 Substitute, Tween 20, and Triton X-100) at 0.1, 0.2, and 0.4% concentration was evaluated. Using the best solution from this first experiment, the addition of trypsin (0.125, 0.25, and 0.5%) and sucrose (74 mM) and the effects of increased concentrations of the detergents at 0.6 and 1.2% concentration were also evaluated. After adjustment of the protocol for flow cytometry, preservation of somatic tissue or isolated nuclei was also evaluated by freezing (at -20 degrees C) and fixation in saturated NaCl solution, acetic methanol (1:3), ethanol, and formalin at 10% for 30 or 60 days of storage at 25 degrees C. Flow cytometry analysis in yellowtail tetra species was optimized using the following conditions: lysis solution: 9.53 mM MgCL2.7H(2)O; 47.67 mM KCl; 15 mM Tris; 74 mM sucrose, 0.6% Triton X-100, pH 8.0; staining solution: Dulbecco's PBS with DAPI 1 mu g mL(-1); preservation procedure: somatic cells (dorsal fin samples) frozen at -20 degrees C. Using this protocol, samples may be stored up to 60 days with good accuracy for flow cytometry analysis.
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spelling A Flow Cytometry Protocol to Estimate DNA Content in the Yellowtail Tetra Astyanax altiparanaeyellowtail tetraploidy statusfishflow cytometrysample preservationThe production of triploid yellowtail tetra Astyanax altiparanae is a key factor to obtain permanently sterile individuals by chromosome set manipulation. Flow cytometric analysis is the main tool for confirmation of the resultant triploids individuals, but very few protocols are specific for A. altiparanae species. The current study has developed a protocol to estimate DNA content in this species. Furthermore, a protocol for long-term storage of dorsal fins used for flow cytometry analysis was established. The combination of five solutions with three detergents (Nonidet P-40 Substitute, Tween 20, and Triton X-100) at 0.1, 0.2, and 0.4% concentration was evaluated. Using the best solution from this first experiment, the addition of trypsin (0.125, 0.25, and 0.5%) and sucrose (74 mM) and the effects of increased concentrations of the detergents at 0.6 and 1.2% concentration were also evaluated. After adjustment of the protocol for flow cytometry, preservation of somatic tissue or isolated nuclei was also evaluated by freezing (at -20 degrees C) and fixation in saturated NaCl solution, acetic methanol (1:3), ethanol, and formalin at 10% for 30 or 60 days of storage at 25 degrees C. Flow cytometry analysis in yellowtail tetra species was optimized using the following conditions: lysis solution: 9.53 mM MgCL2.7H(2)O; 47.67 mM KCl; 15 mM Tris; 74 mM sucrose, 0.6% Triton X-100, pH 8.0; staining solution: Dulbecco's PBS with DAPI 1 mu g mL(-1); preservation procedure: somatic cells (dorsal fin samples) frozen at -20 degrees C. Using this protocol, samples may be stored up to 60 days with good accuracy for flow cytometry analysis.Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)AES TieteFUNDIBIOChico Mendes Inst Biodivers Conservat, Natl Ctr Res & Conservat Continental Fish, Pirassununga, BrazilSao Paulo State Univ, Aquaculture Ctr, Jaboticabal, BrazilHokkaido Univ, Fac Fisheries Sci, Hakodate, Hokkaido, JapanUniv Candido Mendes, Dept Pharm, Rio De Janeiro, BrazilUniv Sao Paulo, Dept Vet Med, Pirassununga, BrazilAES Tiete, Promissao, BrazilSao Paulo State Univ, Aquaculture Ctr, Jaboticabal, BrazilFAPESP: 2010/17429-1FAPESP: 201.1/11664-1AES Tiete: 0064-1052/2014Frontiers Media SaChico Mendes Inst Biodivers ConservatUniversidade Estadual Paulista (Unesp)Hokkaido UnivUniv Candido MendesUniversidade de São Paulo (USP)AES TieteXavier, Pedro L. P.Senhorini, Jose A.Pereira-Santos, Matheus [UNESP]Fujimoto, TakafumiShimoda, EduardoSilva, Luciano A.Santos, Silvio A. dosYasui, George S.2018-11-26T17:41:03Z2018-11-26T17:41:03Z2017-09-25info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article8application/pdfhttp://dx.doi.org/10.3389/fgene.2017.00131Frontiers In Genetics. Lausanne: Frontiers Media Sa, v. 8, 8 p., 2017.1664-8021http://hdl.handle.net/11449/16333910.3389/fgene.2017.00131WOS:000412009800001WOS000412009800001.pdfWeb of Sciencereponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengFrontiers In Genetics2,274info:eu-repo/semantics/openAccess2024-04-09T15:10:36Zoai:repositorio.unesp.br:11449/163339Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T14:29:54.455867Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false
dc.title.none.fl_str_mv A Flow Cytometry Protocol to Estimate DNA Content in the Yellowtail Tetra Astyanax altiparanae
title A Flow Cytometry Protocol to Estimate DNA Content in the Yellowtail Tetra Astyanax altiparanae
spellingShingle A Flow Cytometry Protocol to Estimate DNA Content in the Yellowtail Tetra Astyanax altiparanae
Xavier, Pedro L. P.
yellowtail tetra
ploidy status
fish
flow cytometry
sample preservation
title_short A Flow Cytometry Protocol to Estimate DNA Content in the Yellowtail Tetra Astyanax altiparanae
title_full A Flow Cytometry Protocol to Estimate DNA Content in the Yellowtail Tetra Astyanax altiparanae
title_fullStr A Flow Cytometry Protocol to Estimate DNA Content in the Yellowtail Tetra Astyanax altiparanae
title_full_unstemmed A Flow Cytometry Protocol to Estimate DNA Content in the Yellowtail Tetra Astyanax altiparanae
title_sort A Flow Cytometry Protocol to Estimate DNA Content in the Yellowtail Tetra Astyanax altiparanae
author Xavier, Pedro L. P.
author_facet Xavier, Pedro L. P.
Senhorini, Jose A.
Pereira-Santos, Matheus [UNESP]
Fujimoto, Takafumi
Shimoda, Eduardo
Silva, Luciano A.
Santos, Silvio A. dos
Yasui, George S.
author_role author
author2 Senhorini, Jose A.
Pereira-Santos, Matheus [UNESP]
Fujimoto, Takafumi
Shimoda, Eduardo
Silva, Luciano A.
Santos, Silvio A. dos
Yasui, George S.
author2_role author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Chico Mendes Inst Biodivers Conservat
Universidade Estadual Paulista (Unesp)
Hokkaido Univ
Univ Candido Mendes
Universidade de São Paulo (USP)
AES Tiete
dc.contributor.author.fl_str_mv Xavier, Pedro L. P.
Senhorini, Jose A.
Pereira-Santos, Matheus [UNESP]
Fujimoto, Takafumi
Shimoda, Eduardo
Silva, Luciano A.
Santos, Silvio A. dos
Yasui, George S.
dc.subject.por.fl_str_mv yellowtail tetra
ploidy status
fish
flow cytometry
sample preservation
topic yellowtail tetra
ploidy status
fish
flow cytometry
sample preservation
description The production of triploid yellowtail tetra Astyanax altiparanae is a key factor to obtain permanently sterile individuals by chromosome set manipulation. Flow cytometric analysis is the main tool for confirmation of the resultant triploids individuals, but very few protocols are specific for A. altiparanae species. The current study has developed a protocol to estimate DNA content in this species. Furthermore, a protocol for long-term storage of dorsal fins used for flow cytometry analysis was established. The combination of five solutions with three detergents (Nonidet P-40 Substitute, Tween 20, and Triton X-100) at 0.1, 0.2, and 0.4% concentration was evaluated. Using the best solution from this first experiment, the addition of trypsin (0.125, 0.25, and 0.5%) and sucrose (74 mM) and the effects of increased concentrations of the detergents at 0.6 and 1.2% concentration were also evaluated. After adjustment of the protocol for flow cytometry, preservation of somatic tissue or isolated nuclei was also evaluated by freezing (at -20 degrees C) and fixation in saturated NaCl solution, acetic methanol (1:3), ethanol, and formalin at 10% for 30 or 60 days of storage at 25 degrees C. Flow cytometry analysis in yellowtail tetra species was optimized using the following conditions: lysis solution: 9.53 mM MgCL2.7H(2)O; 47.67 mM KCl; 15 mM Tris; 74 mM sucrose, 0.6% Triton X-100, pH 8.0; staining solution: Dulbecco's PBS with DAPI 1 mu g mL(-1); preservation procedure: somatic cells (dorsal fin samples) frozen at -20 degrees C. Using this protocol, samples may be stored up to 60 days with good accuracy for flow cytometry analysis.
publishDate 2017
dc.date.none.fl_str_mv 2017-09-25
2018-11-26T17:41:03Z
2018-11-26T17:41:03Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://dx.doi.org/10.3389/fgene.2017.00131
Frontiers In Genetics. Lausanne: Frontiers Media Sa, v. 8, 8 p., 2017.
1664-8021
http://hdl.handle.net/11449/163339
10.3389/fgene.2017.00131
WOS:000412009800001
WOS000412009800001.pdf
url http://dx.doi.org/10.3389/fgene.2017.00131
http://hdl.handle.net/11449/163339
identifier_str_mv Frontiers In Genetics. Lausanne: Frontiers Media Sa, v. 8, 8 p., 2017.
1664-8021
10.3389/fgene.2017.00131
WOS:000412009800001
WOS000412009800001.pdf
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Frontiers In Genetics
2,274
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 8
application/pdf
dc.publisher.none.fl_str_mv Frontiers Media Sa
publisher.none.fl_str_mv Frontiers Media Sa
dc.source.none.fl_str_mv Web of Science
reponame:Repositório Institucional da UNESP
instname:Universidade Estadual Paulista (UNESP)
instacron:UNESP
instname_str Universidade Estadual Paulista (UNESP)
instacron_str UNESP
institution UNESP
reponame_str Repositório Institucional da UNESP
collection Repositório Institucional da UNESP
repository.name.fl_str_mv Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)
repository.mail.fl_str_mv
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