A Flow Cytometry Protocol to Estimate DNA Content in the Yellowtail Tetra Astyanax altiparanae
Autor(a) principal: | |
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Data de Publicação: | 2017 |
Outros Autores: | , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da UNESP |
Texto Completo: | http://dx.doi.org/10.3389/fgene.2017.00131 http://hdl.handle.net/11449/163339 |
Resumo: | The production of triploid yellowtail tetra Astyanax altiparanae is a key factor to obtain permanently sterile individuals by chromosome set manipulation. Flow cytometric analysis is the main tool for confirmation of the resultant triploids individuals, but very few protocols are specific for A. altiparanae species. The current study has developed a protocol to estimate DNA content in this species. Furthermore, a protocol for long-term storage of dorsal fins used for flow cytometry analysis was established. The combination of five solutions with three detergents (Nonidet P-40 Substitute, Tween 20, and Triton X-100) at 0.1, 0.2, and 0.4% concentration was evaluated. Using the best solution from this first experiment, the addition of trypsin (0.125, 0.25, and 0.5%) and sucrose (74 mM) and the effects of increased concentrations of the detergents at 0.6 and 1.2% concentration were also evaluated. After adjustment of the protocol for flow cytometry, preservation of somatic tissue or isolated nuclei was also evaluated by freezing (at -20 degrees C) and fixation in saturated NaCl solution, acetic methanol (1:3), ethanol, and formalin at 10% for 30 or 60 days of storage at 25 degrees C. Flow cytometry analysis in yellowtail tetra species was optimized using the following conditions: lysis solution: 9.53 mM MgCL2.7H(2)O; 47.67 mM KCl; 15 mM Tris; 74 mM sucrose, 0.6% Triton X-100, pH 8.0; staining solution: Dulbecco's PBS with DAPI 1 mu g mL(-1); preservation procedure: somatic cells (dorsal fin samples) frozen at -20 degrees C. Using this protocol, samples may be stored up to 60 days with good accuracy for flow cytometry analysis. |
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A Flow Cytometry Protocol to Estimate DNA Content in the Yellowtail Tetra Astyanax altiparanaeyellowtail tetraploidy statusfishflow cytometrysample preservationThe production of triploid yellowtail tetra Astyanax altiparanae is a key factor to obtain permanently sterile individuals by chromosome set manipulation. Flow cytometric analysis is the main tool for confirmation of the resultant triploids individuals, but very few protocols are specific for A. altiparanae species. The current study has developed a protocol to estimate DNA content in this species. Furthermore, a protocol for long-term storage of dorsal fins used for flow cytometry analysis was established. The combination of five solutions with three detergents (Nonidet P-40 Substitute, Tween 20, and Triton X-100) at 0.1, 0.2, and 0.4% concentration was evaluated. Using the best solution from this first experiment, the addition of trypsin (0.125, 0.25, and 0.5%) and sucrose (74 mM) and the effects of increased concentrations of the detergents at 0.6 and 1.2% concentration were also evaluated. After adjustment of the protocol for flow cytometry, preservation of somatic tissue or isolated nuclei was also evaluated by freezing (at -20 degrees C) and fixation in saturated NaCl solution, acetic methanol (1:3), ethanol, and formalin at 10% for 30 or 60 days of storage at 25 degrees C. Flow cytometry analysis in yellowtail tetra species was optimized using the following conditions: lysis solution: 9.53 mM MgCL2.7H(2)O; 47.67 mM KCl; 15 mM Tris; 74 mM sucrose, 0.6% Triton X-100, pH 8.0; staining solution: Dulbecco's PBS with DAPI 1 mu g mL(-1); preservation procedure: somatic cells (dorsal fin samples) frozen at -20 degrees C. Using this protocol, samples may be stored up to 60 days with good accuracy for flow cytometry analysis.Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)AES TieteFUNDIBIOChico Mendes Inst Biodivers Conservat, Natl Ctr Res & Conservat Continental Fish, Pirassununga, BrazilSao Paulo State Univ, Aquaculture Ctr, Jaboticabal, BrazilHokkaido Univ, Fac Fisheries Sci, Hakodate, Hokkaido, JapanUniv Candido Mendes, Dept Pharm, Rio De Janeiro, BrazilUniv Sao Paulo, Dept Vet Med, Pirassununga, BrazilAES Tiete, Promissao, BrazilSao Paulo State Univ, Aquaculture Ctr, Jaboticabal, BrazilFAPESP: 2010/17429-1FAPESP: 201.1/11664-1AES Tiete: 0064-1052/2014Frontiers Media SaChico Mendes Inst Biodivers ConservatUniversidade Estadual Paulista (Unesp)Hokkaido UnivUniv Candido MendesUniversidade de São Paulo (USP)AES TieteXavier, Pedro L. P.Senhorini, Jose A.Pereira-Santos, Matheus [UNESP]Fujimoto, TakafumiShimoda, EduardoSilva, Luciano A.Santos, Silvio A. dosYasui, George S.2018-11-26T17:41:03Z2018-11-26T17:41:03Z2017-09-25info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article8application/pdfhttp://dx.doi.org/10.3389/fgene.2017.00131Frontiers In Genetics. Lausanne: Frontiers Media Sa, v. 8, 8 p., 2017.1664-8021http://hdl.handle.net/11449/16333910.3389/fgene.2017.00131WOS:000412009800001WOS000412009800001.pdfWeb of Sciencereponame:Repositório Institucional da UNESPinstname:Universidade Estadual Paulista (UNESP)instacron:UNESPengFrontiers In Genetics2,274info:eu-repo/semantics/openAccess2024-04-09T15:10:36Zoai:repositorio.unesp.br:11449/163339Repositório InstitucionalPUBhttp://repositorio.unesp.br/oai/requestopendoar:29462024-08-05T14:29:54.455867Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP)false |
dc.title.none.fl_str_mv |
A Flow Cytometry Protocol to Estimate DNA Content in the Yellowtail Tetra Astyanax altiparanae |
title |
A Flow Cytometry Protocol to Estimate DNA Content in the Yellowtail Tetra Astyanax altiparanae |
spellingShingle |
A Flow Cytometry Protocol to Estimate DNA Content in the Yellowtail Tetra Astyanax altiparanae Xavier, Pedro L. P. yellowtail tetra ploidy status fish flow cytometry sample preservation |
title_short |
A Flow Cytometry Protocol to Estimate DNA Content in the Yellowtail Tetra Astyanax altiparanae |
title_full |
A Flow Cytometry Protocol to Estimate DNA Content in the Yellowtail Tetra Astyanax altiparanae |
title_fullStr |
A Flow Cytometry Protocol to Estimate DNA Content in the Yellowtail Tetra Astyanax altiparanae |
title_full_unstemmed |
A Flow Cytometry Protocol to Estimate DNA Content in the Yellowtail Tetra Astyanax altiparanae |
title_sort |
A Flow Cytometry Protocol to Estimate DNA Content in the Yellowtail Tetra Astyanax altiparanae |
author |
Xavier, Pedro L. P. |
author_facet |
Xavier, Pedro L. P. Senhorini, Jose A. Pereira-Santos, Matheus [UNESP] Fujimoto, Takafumi Shimoda, Eduardo Silva, Luciano A. Santos, Silvio A. dos Yasui, George S. |
author_role |
author |
author2 |
Senhorini, Jose A. Pereira-Santos, Matheus [UNESP] Fujimoto, Takafumi Shimoda, Eduardo Silva, Luciano A. Santos, Silvio A. dos Yasui, George S. |
author2_role |
author author author author author author author |
dc.contributor.none.fl_str_mv |
Chico Mendes Inst Biodivers Conservat Universidade Estadual Paulista (Unesp) Hokkaido Univ Univ Candido Mendes Universidade de São Paulo (USP) AES Tiete |
dc.contributor.author.fl_str_mv |
Xavier, Pedro L. P. Senhorini, Jose A. Pereira-Santos, Matheus [UNESP] Fujimoto, Takafumi Shimoda, Eduardo Silva, Luciano A. Santos, Silvio A. dos Yasui, George S. |
dc.subject.por.fl_str_mv |
yellowtail tetra ploidy status fish flow cytometry sample preservation |
topic |
yellowtail tetra ploidy status fish flow cytometry sample preservation |
description |
The production of triploid yellowtail tetra Astyanax altiparanae is a key factor to obtain permanently sterile individuals by chromosome set manipulation. Flow cytometric analysis is the main tool for confirmation of the resultant triploids individuals, but very few protocols are specific for A. altiparanae species. The current study has developed a protocol to estimate DNA content in this species. Furthermore, a protocol for long-term storage of dorsal fins used for flow cytometry analysis was established. The combination of five solutions with three detergents (Nonidet P-40 Substitute, Tween 20, and Triton X-100) at 0.1, 0.2, and 0.4% concentration was evaluated. Using the best solution from this first experiment, the addition of trypsin (0.125, 0.25, and 0.5%) and sucrose (74 mM) and the effects of increased concentrations of the detergents at 0.6 and 1.2% concentration were also evaluated. After adjustment of the protocol for flow cytometry, preservation of somatic tissue or isolated nuclei was also evaluated by freezing (at -20 degrees C) and fixation in saturated NaCl solution, acetic methanol (1:3), ethanol, and formalin at 10% for 30 or 60 days of storage at 25 degrees C. Flow cytometry analysis in yellowtail tetra species was optimized using the following conditions: lysis solution: 9.53 mM MgCL2.7H(2)O; 47.67 mM KCl; 15 mM Tris; 74 mM sucrose, 0.6% Triton X-100, pH 8.0; staining solution: Dulbecco's PBS with DAPI 1 mu g mL(-1); preservation procedure: somatic cells (dorsal fin samples) frozen at -20 degrees C. Using this protocol, samples may be stored up to 60 days with good accuracy for flow cytometry analysis. |
publishDate |
2017 |
dc.date.none.fl_str_mv |
2017-09-25 2018-11-26T17:41:03Z 2018-11-26T17:41:03Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://dx.doi.org/10.3389/fgene.2017.00131 Frontiers In Genetics. Lausanne: Frontiers Media Sa, v. 8, 8 p., 2017. 1664-8021 http://hdl.handle.net/11449/163339 10.3389/fgene.2017.00131 WOS:000412009800001 WOS000412009800001.pdf |
url |
http://dx.doi.org/10.3389/fgene.2017.00131 http://hdl.handle.net/11449/163339 |
identifier_str_mv |
Frontiers In Genetics. Lausanne: Frontiers Media Sa, v. 8, 8 p., 2017. 1664-8021 10.3389/fgene.2017.00131 WOS:000412009800001 WOS000412009800001.pdf |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Frontiers In Genetics 2,274 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
8 application/pdf |
dc.publisher.none.fl_str_mv |
Frontiers Media Sa |
publisher.none.fl_str_mv |
Frontiers Media Sa |
dc.source.none.fl_str_mv |
Web of Science reponame:Repositório Institucional da UNESP instname:Universidade Estadual Paulista (UNESP) instacron:UNESP |
instname_str |
Universidade Estadual Paulista (UNESP) |
instacron_str |
UNESP |
institution |
UNESP |
reponame_str |
Repositório Institucional da UNESP |
collection |
Repositório Institucional da UNESP |
repository.name.fl_str_mv |
Repositório Institucional da UNESP - Universidade Estadual Paulista (UNESP) |
repository.mail.fl_str_mv |
|
_version_ |
1808128368831365120 |